Listening on http://127.0.0.1:36631
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: PKI
Loading required package: base64enc
saving 'login and webservicepassword' ...
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), endpoint = "user",  :
  query failed.
saving 'login and webservicepassword' ...
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  126: <Anonymous>
  125: stop
  124: value[[3L]] [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#83]
  123: tryCatchOne
  122: tryCatchList
  121: tryCatch
  120: <reactive:readSampleList> [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#77]
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#189]
   96: func
   83: renderFunc
   82: output$title
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  106: <Anonymous>
  105: stop
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#215]
   96: func
   83: renderFunc
   82: output$customerInfo
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  106: <Anonymous>
  105: stop
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#244]
   96: func
   83: renderFunc
   82: output$peptideList
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  106: <Anonymous>
  105: stop
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#262]
   96: func
   83: renderFunc
   82: output$parameterList
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  106: <Anonymous>
  105: stop
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#610]
   96: func
   83: renderFunc
   82: output$inputCustomText1
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  106: <Anonymous>
  105: stop
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#635]
   96: func
   83: renderFunc
   82: output$inputCustomText3
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  106: <Anonymous>
  105: stop
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#649]
   96: func
   83: renderFunc
   82: output$inputCustomText4
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  106: <Anonymous>
  105: stop
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#668]
   96: func
   83: renderFunc
   82: output$inputCustomText2
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  106: <Anonymous>
  105: stop
  104: readSampleList
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#739]
   96: func
   83: renderFunc
   82: output$formula
    1: runApp
Warning: Error in <-: 'names' attribute [10] must be the same length as the vector [1]
  144: <Anonymous>
  143: stop
  142: readSampleList
  135: <reactive:orderId> [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#44]
  119: orderId
  116: <reactive:reportFilename> [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#762]
  100: reportFilename
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#768]
   96: func
   83: renderFunc
   82: output$parameter
    1: runApp
Warning in readLines(inputfile) :
  incomplete final line found on '/tmp/RtmpRcjn3k/dd1b8613405d4e95d7d7f54e/0.txt'
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#156]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#111]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Valentin_von Roten_31353_20230405.pdf
bfabricUpload