Listening on http://127.0.0.1:45321
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: PKI
Loading required package: base64enc
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Hagit_Elhawi_35760_20240724.pdf
bfabricUpload
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Dr._Hagit Elhawi_35760_20240724.pdf
bfabricUpload


Execution halted