Listening on http://127.0.0.1:45797
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: PKI
Loading required package: base64enc
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
saving 'login and webservicepassword' ...
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
saving 'login and webservicepassword' ...
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning: Error in [<-.data.frame: replacement has 19 rows, data has 16
  86: stop
  85: [<-.data.frame
  83: kableExtra::kable
  81: output$outputKable1 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#147]
   1: runApp
saving 'login and webservicepassword' ...
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning: Error in [<-.data.frame: replacement has 19 rows, data has 16
  86: stop
  85: [<-.data.frame
  83: kableExtra::kable
  81: output$outputKable1 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#147]
   1: runApp
saving 'login and webservicepassword' ...
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning: Error in [<-.data.frame: replacement has 19 rows, data has 16
  86: stop
  85: [<-.data.frame
  83: kableExtra::kable
  81: output$outputKable1 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#147]
   1: runApp
Warning in amount * amino_acid_mass :
  longer object length is not a multiple of shorter object length
Warning: Error in [<-.data.frame: replacement has 19 rows, data has 16
  86: stop
  85: [<-.data.frame
  83: kableExtra::kable
  81: output$outputKable2 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#147]
   1: runApp
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  87: stop
  86: fix.by
  85: merge.data.frame
  83: deriveAminoAcidFrequence
  82: aaa:::getOutputTable
  81: output$outputKable1 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#136]
   1: runApp
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Dr._Marianna Carone_36074_20240821.pdf
bfabricUpload
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Dr._Marianna Carone_36074_20240821.pdf
bfabricUpload
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Dr._Marianna Carone_36074_20240821.pdf
bfabricUpload
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.


Execution halted