Listening on http://127.0.0.1:45297
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: PKI
Loading required package: base64enc
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
Warning: Error in fix.by: 'by' must specify a uniquely valid column
  105: stop
  104: fix.by
  103: merge.data.frame
  101: deriveAminoAcidFrequence
  100: aaa:::getOutputTable
   99: FUN [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#161]
   98: lapply
   97: renderUI [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#116]
   96: func
   83: renderFunc
   82: output$outputKable
    1: runApp
saving 'login and webservicepassword' ...
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Serge_Chesnov_36353_20240920.pdf
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Serge_Chesnov_36353_20240920.pdf
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Serge_Chesnov_36353_20240920.pdf
bfabricUpload
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Serge_Chesnov_36353_20240920.pdf
bfabricUpload
Warning: Error in format.default: argument "x" is missing, with no default
  90: format.default
  86: format_args
  85: to_character
  83: kableExtra::kable
  81: output$outputKable1 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#143]
   1: runApp
Warning: Error in format.default: argument "x" is missing, with no default
  90: format.default
  86: format_args
  85: to_character
  83: kableExtra::kable
  81: output$outputKable2 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#143]
   1: runApp
Warning: Error in format.default: argument "x" is missing, with no default
  90: format.default
  86: format_args
  85: to_character
  83: kableExtra::kable
  81: output$outputKable3 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#143]
   1: runApp
Warning: Error in format.default: argument "x" is missing, with no default
  90: format.default
  86: format_args
  85: to_character
  83: kableExtra::kable
  81: output$outputKable1 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#143]
   1: runApp
Warning: Error in format.default: argument "x" is missing, with no default
  90: format.default
  86: format_args
  85: to_character
  83: kableExtra::kable
  81: output$outputKable2 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#143]
   1: runApp
Warning: Error in format.default: argument "x" is missing, with no default
  90: format.default
  86: format_args
  85: to_character
  83: kableExtra::kable
  81: output$outputKable3 [/usr/local/lib/R/site-library/aaa/shiny/aminoAcidAnalysis/server.R#143]
   1: runApp
generateReport


processing file: report.Rmd
output file: report.knit.md


Output created: aaa-report_Hagit_Elhawi_36317_20240920.pdf
bfabricUpload


Execution halted