Listening on http://127.0.0.1:33237
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: protViz
Loading required package: rawDiag
Loading required package: parallel
Loading required package: tidyr
Loading required package: rmarkdown
Loading required package: base64enc
Loading required package: ggplot2
Loading required package: lattice
Loading required package: PKI


already uploaded to bfabric
saving 'login and webservicepassword' ...
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20211110/20211110_007r_S326787_TMT_sample_o25473_IE70_OE100.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
bf$projectid()=3000



already uploaded to bfabric
/scratch/cpanse/
saving 'login and webservicepassword' ...
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...


already uploaded to bfabric
saving 'login and webservicepassword' ...
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...


already uploaded to bfabric
saving 'login and webservicepassword' ...
read bfabricposturl http://fgcz-148.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
bf$projectid()=3000


already uploaded to bfabric
saving 'login and webservicepassword' ...
read bfabricposturl http://fgcz-148.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning: Error in if: argument is of length zero
  97: renderUI [/usr/local/lib/R/site-library/rawDiag/shiny/bfabric_rawDiag/server.R#885]
  96: func
  83: renderFunc
  82: output$PDF
   1: runApp
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p29133/Proteomics/EXPLORIS_2/analytic_20220809_DIA/20220809_C29133_008_SecrSamplesPool_f3.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
bf$projectid()=3000



already uploaded to bfabric
/scratch/cpanse/