Listening on http://127.0.0.1:44187 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI already uploaded to bfabric /scratch/cpanse/ saving 'login and webservicepassword' ... read bfabricposturl http://localhost:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE bfabricConnectionWorking TRUE saving 'login and webservicepassword' ... already uploaded to bfabric saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-148.uzh.ch:5000/. Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL certificate problem: self signed certificate 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL certificate problem: self signed certificate 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL certificate problem: self signed certificate 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL certificate problem: self signed certificate 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL certificate problem: self signed certificate 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL certificate problem: self signed certificate 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL certificate problem: self signed certificate 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL certificate problem: self signed certificate 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp already uploaded to bfabric saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-148.uzh.ch:5000/. Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp already uploaded to bfabric /scratch/cpanse/ saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-148.uzh.ch:5000/. Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: SSL peer certificate or SSH remote key was not OK: [fgcz-148.uzh.ch:5000] SSL: no alternative certificate subject name matches target host name 'fgcz-148.uzh.ch' 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp already uploaded to bfabric /scratch/cpanse/ saving 'login and webservicepassword' ... read bfabricposturl https://localhost:5000/. Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp already uploaded to bfabric /scratch/cpanse/ already uploaded to bfabric /scratch/cpanse/ saving 'login and webservicepassword' ... read bfabricposturl https://localhost:5000/. Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 149: curl::curl_fetch_memory 148: request_fetch.write_memory 146: request_perform 145: httr::POST 144: .read 143: bfabricShiny::readPages 142: eventReactiveValueFunc 98: bfabricConnectionWorking 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-containers 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp Warning: Error in curl::curl_fetch_memory: error:1408F10B:SSL routines:ssl3_get_record:wrong version number 166: curl::curl_fetch_memory 165: request_fetch.write_memory 163: request_perform 162: httr::POST 161: .read 160: bfabricShiny::readPages 159: eventReactiveValueFunc 115: bfabricConnectionWorking 114: 98: empdegree 97: renderUI 96: func 83: renderFunc 82: output$bfabric8-employee 1: runApp already uploaded to bfabric /scratch/cpanse/ saving 'login and webservicepassword' ... read bfabricposturl http://localhost:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE bfabricConnectionWorking TRUE saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/QEXACTIVEHFX_1/lkunz_20191022_TMT_frac_test/20191022_02_HEK_TMT.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode Warning: Removed 94 rows containing non-finite values (`stat_smooth()`). DEBUG login: cpanse posturl: http://localhost:5000/ Execution halted