Listening on http://127.0.0.1:35807
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: protViz
Loading required package: rawDiag
Loading required package: parallel
Loading required package: tidyr
Loading required package: rmarkdown
Loading required package: base64enc
Loading required package: ggplot2
Loading required package: lattice
Loading required package: PKI


already uploaded to bfabric
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p29133/Proteomics/EXPLORIS_2/analytic_20220809_DIA/20220809_C29133_001_CellSamplesPool_f1.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
DEBUG  observeEvent rv$download_flag
login: cpanse
posturl: http://localhost:5000/
pdf(): /tmp/Rtmpxk426P/rawDiag-2a0268151cb955.pdf
Warning: Removed 29 rows containing missing values (`geom_line()`).
Warning: Removed 29 rows containing missing values (`geom_line()`).
DEBUG  observeEvent rv$download_flag
login: cpanse
posturl: http://localhost:5000/
pdf(): /tmp/Rtmpxk426P/rawDiag-2a0268151cb955.pdf