Listening on http://127.0.0.1:36169 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl http://localhost:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 32905 output$tic.basepeak <- renderPlot({ #rows are 32905 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/Rtmpt2Jjdp/rawDiag-2ad58439654f6b.pdf generated pdf /tmp/Rtmpt2Jjdp/rawDiag-2ad58439654f6b.pdf bfabricShiny::uploadResource ... The current plot is available as workunit 287586 #rows are 32905 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 32905 output$download 2... ggsave to file /tmp/Rtmpt2Jjdp/rawDiag-2ad5846294c66f.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmpt2Jjdp/rawDiag-2ad5846294c66f.pdf bfabricShiny::uploadResource ... The current plot is available as workunit 287587 #rows are 32905 output$download 1... output$tic.basepeak <- renderPlot({ #rows are 32905 output$download 2... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 32905 output$download 2... ggsave to file /tmp/Rtmpt2Jjdp/rawDiag-2ad5845e75169.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmpt2Jjdp/rawDiag-2ad5845e75169.pdf bfabricShiny::uploadResource ... The current plot is available as workunit 287588 #rows are 32905 output$download 1... #rows are 32905 output$download 2... #rows are 32905 output$download 2... ggsave to file /tmp/Rtmpt2Jjdp/rawDiag-2ad584672b1877.pdf generated pdf /tmp/Rtmpt2Jjdp/rawDiag-2ad584672b1877.pdf bfabricShiny::uploadResource ... The current plot is available as workunit 287589 #rows are 32905 output$download 1... #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl http://localhost:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_005_S408772_Kuppfer_KF_50_enriched_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_021_S408766_Kuppfer_Bravo_50_ft_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_015_S408768_Kuppfer_Bravo_50_enriched_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_002_S408767_Kuppfer_Bravo_200_enriched_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_008_S408765_Kuppfer_Bravo_200_ft_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_011_S408770_Kuppfer_KF_50_ft_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_023_S408770_Kuppfer_KF_50_ft_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_017_S408772_Kuppfer_KF_50_enriched_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_022_S408769_Kuppfer_KF_200_ft_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_014_S408767_Kuppfer_Bravo_200_enriched_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_020_S408765_Kuppfer_Bravo_200_ft_DIA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_009_S408766_Kuppfer_Bravo_50_ft_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_016_S408771_Kuppfer_KF_200_enriched_DIA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_010_S408769_Kuppfer_KF_200_ft_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_003_S408768_Kuppfer_Bravo_50_enriched_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 1784096 output$tic.basepeak <- renderPlot({ #rows are 1784096 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/Rtmpt2Jjdp/rawDiag-2ad58412ca539b.pdf generated pdf /tmp/Rtmpt2Jjdp/rawDiag-2ad58412ca539b.pdf bfabricShiny::uploadResource ... The current plot is available as workunit 287590 #rows are 1784096 output$download 1... saving 'login and webservicepassword' ... #rows are 1784096 output$download 2... #rows are 1784096 output$download 2... #rows are 1784096 output$download 2... #rows are 1784096 output$download 2... `geom_smooth()` using formula = 'y ~ x' #rows are 1784096 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 1784096 output$download 2... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 1784096 output$download 2... #rows are 1784096 output$download 2...