Listening on http://127.0.0.1:39377
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: protViz
Loading required package: rawDiag
Loading required package: parallel
Loading required package: tidyr
Loading required package: rmarkdown
Loading required package: base64enc
Loading required package: ggplot2
Loading required package: lattice
Loading required package: PKI



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p29133/Proteomics/EXPLORIS_2/analytic_20220809_DIA/20220809_C29133_006_SecrSamplesPool_f1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p29133/Proteomics/EXPLORIS_2/analytic_20220809_DIA/20220809_C29133_007_SecrSamplesPool_f2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p29133/Proteomics/EXPLORIS_2/analytic_20220809_DIA/20220809_C29133_008_SecrSamplesPool_f3.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 244482
#rows are 244482
output$download 2...
saving 'login and webservicepassword' ...
#rows are 244482
output$download 2...
#rows are 244482
output$download 2...
ggsave to file /tmp/RtmpJlObht/rawDiag-2af1e26402d033.pdf
generated pdf
/tmp/RtmpJlObht/rawDiag-2af1e26402d033.pdf
bfabricShiny::uploadResource ...
Warning in resources$relativepath == input$relativepath :
  longer object length is not a multiple of shorter object length
The current plot is available as workunit 287591
#rows are 244482
output$download 1...
saving 'login and webservicepassword' ...
#rows are 244482
output$download 2...
ggsave to file /tmp/RtmpJlObht/rawDiag-2af1e226370cb6.pdf
generated pdf
/tmp/RtmpJlObht/rawDiag-2af1e226370cb6.pdf
bfabricShiny::uploadResource ...
Warning in resources$relativepath == input$relativepath :
  longer object length is not a multiple of shorter object length
The current plot is available as workunit 287592
#rows are 244482
output$download 1...


Execution halted