Listening on http://127.0.0.1:38711
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: protViz
Loading required package: rawDiag
Loading required package: parallel
Loading required package: tidyr
Loading required package: rmarkdown
Loading required package: base64enc
Loading required package: ggplot2
Loading required package: lattice
Loading required package: PKI



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/QEXACTIVEHF_2/spfammatter_20220225/20220225_002_autoQC03_DIA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/QEXACTIVEHF_2/spfammatter_20220225/20220225_001_autoQC03_DIA.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 95509
output$tic.basepeak <- renderPlot({
#rows are 95509
output$download 2...
saving 'login and webservicepassword' ...
#rows are 95509
output$download 2...
`geom_smooth()` using formula = 'y ~ x'
#rows are 95509
output$download 2...
#rows are 95509
output$download 2...
#rows are 95509
output$download 2...
`geom_smooth()` using formula = 'y ~ x'
#rows are 95509
output$download 2...
#rows are 95509
output$download 2...
Warning: Error in <Anonymous>: 'data' must be 2-dimensional (e.g. data frame or matrix)
  107: stop
  106: <Anonymous>
  104: processWidget
  103: widgetFunc
  102: ::
htmlwidgets
shinyRenderWidget
  101: func
   88: renderFunc
   87: renderFunc
   83: renderFunc
   82: output$tableInfo
    1: runApp
output$tic.basepeak <- renderPlot({
#rows are 95509
output$download 2...
output$scan.frequency <- renderPlot
Warning: Removed 58 rows containing missing values (`geom_line()`).
#rows are 95509
output$download 2...
#rows are 95509
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b443169362c0b.pdf
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b443169362c0b.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287612
#rows are 95509
output$download 1...
saving 'login and webservicepassword' ...


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning in parallel::mclapply(rf, FUN = rawDiag::read.raw, mono = TRUE,  :
  all scheduled cores encountered errors in user code
Warning: Error in : All inputs to rbind.fill must be data.frames
  144: stop
  143: plyr::rbind.fill
  142: eventReactiveValueFunc [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#470]
   98: rawData
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#90]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp
Warning in parallel::mclapply(rf, FUN = rawDiag::read.raw, mono = TRUE,  :
  all scheduled cores encountered errors in user code
Warning: Error in : All inputs to rbind.fill must be data.frames
  144: stop
  143: plyr::rbind.fill
  142: eventReactiveValueFunc [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#470]
   98: rawData
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#90]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning in parallel::mclapply(rf, FUN = rawDiag::read.raw, mono = TRUE,  :
  all scheduled cores encountered errors in user code
Warning: Error in : All inputs to rbind.fill must be data.frames
  144: stop
  143: plyr::rbind.fill
  142: eventReactiveValueFunc [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#470]
   98: rawData
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#90]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning in parallel::mclapply(rf, FUN = rawDiag::read.raw, mono = TRUE,  :
  all scheduled cores encountered errors in user code
Warning: Error in : All inputs to rbind.fill must be data.frames
  144: stop
  143: plyr::rbind.fill
  142: eventReactiveValueFunc [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#470]
   98: rawData
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#90]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Warning: Error in FUN: file.exists(file) is not TRUE
  149: <Anonymous>
  148: stop
  147: stopifnot
  146: FUN
  145: lapply
  144: parallel::mclapply
  142: eventReactiveValueFunc [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#470]
   98: rawData
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#90]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_007_S489683_RPA70-IP_Repl1_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_010_S489686_RPA70-IP_Repl4_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_008_S489684_RPA70-IP_Repl2_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_003_S489550_IgG-IP_Repl2_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_004_S489681_IgG-IP_Repl3_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_009_S489685_RPA70-IP_Repl3_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_005_S489682_IgG-IP_Repl4_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_002_S489549_IgG-IP_Repl1_Control.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 217006
output$tic.basepeak <- renderPlot({
#rows are 217006
output$download 2...
saving 'login and webservicepassword' ...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b443156e6981f.pdf
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b443156e6981f.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287635
#rows are 217006
output$download 1...
saving 'login and webservicepassword' ...
#rows are 217006
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b44314834073a.pdf
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b44314834073a.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287636
#rows are 217006
output$download 1...
output$scan.frequency <- renderPlot
Warning: Removed 29 rows containing missing values (`geom_line()`).
#rows are 217006
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b44313949ee62.pdf
Warning: Removed 29 rows containing missing values (`geom_line()`).
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b44313949ee62.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287637
#rows are 217006
output$download 1...
#rows are 217006
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b4431cef3459.pdf
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b4431cef3459.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287638
#rows are 217006
output$download 1...
DEBUG queryMass
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation ideoms with `aes()`
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
#rows are 217006
output$download 2...
DEBUG renderPlot
plotQCs
#rows are 217006
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b4431287bc84b.pdf
Warning: Error in +: non-numeric argument to binary operator
  1: runApp



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_004_S489681_IgG-IP_Repl3_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_008_S489684_RPA70-IP_Repl2_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_002_S489549_IgG-IP_Repl1_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_003_S489550_IgG-IP_Repl2_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_005_S489682_IgG-IP_Repl4_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_010_S489686_RPA70-IP_Repl4_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_009_S489685_RPA70-IP_Repl3_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_007_S489683_RPA70-IP_Repl1_Group_1.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed LMmZCorrectionppm to LMCorrection
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed AGCPSMode to PrescanMode
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 217006
output$tic.basepeak <- renderPlot({
#rows are 217006
output$download 2...
saving 'login and webservicepassword' ...
output$tic.basepeak <- renderPlot({
#rows are 217006
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b443154ad9da4.pdf
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b443154ad9da4.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287639
#rows are 217006
output$download 1...
saving 'login and webservicepassword' ...


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
output$tic.basepeak <- renderPlot({
#rows are 217006
output$download 2...



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl http://localhost:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_004_S489681_IgG-IP_Repl3_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_002_S489549_IgG-IP_Repl1_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_008_S489684_RPA70-IP_Repl2_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_003_S489550_IgG-IP_Repl2_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_005_S489682_IgG-IP_Repl4_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_010_S489686_RPA70-IP_Repl4_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_009_S489685_RPA70-IP_Repl3_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31320/Proteomics/QEXACTIVEHF_2/lkunz_20230331/20230331_007_S489683_RPA70-IP_Repl1_Group_1.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 217006
DEBUG queryMass
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
#rows are 217006
output$download 2...
saving 'login and webservicepassword' ...
Warning: The select input "bfabric8-workunit" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic.
Warning: Error in if: argument is of length zero
  168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#841]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xic
    1: runApp
Warning: Error in if: argument is of length zero
  168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#841]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xic
    1: runApp
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_002_S489895_R1_TurboID_Prat2_Early_Control1_Early.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_014_S489889_R1_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_016_S489898_R1_TurboID_Crq_Early_Control2_Early.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_011_S489891_R3_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_022_S489900_R1_TurboID_Crq_Late_Control2_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_028_S489894_R6_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_009_S489902_R3_TurboID_Crq_Late_Control2_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_003_S489903_R1_Palm_Crq_Early_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_015_S489901_R2_TurboID_Crq_Late_Control2_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_033_S489886_R4_Palm_Prat2_Late_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_034_S489890_R2_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_020_S489885_R3_Palm_Prat2_Late_Group_1.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_008_S489887_R5_Palm_Prat2_Late_Group_1.raw qc ...
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_004_S489905_R2_Palm_Crq_Late_Group_4.raw qc ...
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_021_S489904_R1_Palm_Crq_Late_Group_4.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed AGCPSMode to PrescanMode
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_023_S489884_R2_Palm_Prat2_Late_Group_1.raw qc ...
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_026_S489892_R4_Palm_Prat2_Early_Group_2.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_017_S489897_R2_TurboID_Prat2_Late_Control1_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_029_S489893_R5_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_010_S489899_R2_TurboID_Crq_Early_Control2_Early.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_005_S489896_R1_TurboID_Prat2_Late_Control1_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_032_S489883_R1_Palm_Prat2_Late_Group_1.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_027_S489888_R6_Palm_Prat2_Late_Group_1.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 608706
output$download 2...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_034_S489890_R2_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_003_S489903_R1_Palm_Crq_Early_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_028_S489894_R6_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_009_S489902_R3_TurboID_Crq_Late_Control2_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_020_S489885_R3_Palm_Prat2_Late_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_011_S489891_R3_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_014_S489889_R1_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_033_S489886_R4_Palm_Prat2_Late_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_002_S489895_R1_TurboID_Prat2_Early_Control1_Early.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_015_S489901_R2_TurboID_Crq_Late_Control2_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_016_S489898_R1_TurboID_Crq_Early_Control2_Early.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_022_S489900_R1_TurboID_Crq_Late_Control2_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_021_S489904_R1_Palm_Crq_Late_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_004_S489905_R2_Palm_Crq_Late_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_023_S489884_R2_Palm_Prat2_Late_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_010_S489899_R2_TurboID_Crq_Early_Control2_Early.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_008_S489887_R5_Palm_Prat2_Late_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_005_S489896_R1_TurboID_Prat2_Late_Control1_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_029_S489893_R5_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_026_S489892_R4_Palm_Prat2_Early_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_017_S489897_R2_TurboID_Prat2_Late_Control1_Late.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_027_S489888_R6_Palm_Prat2_Late_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31339/Proteomics/QEXACTIVEHF_2/brunnerdamian_20230331/20230331_032_S489883_R1_Palm_Prat2_Late_Group_1.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
output$tic.basepeak <- renderPlot({
#rows are 608706
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b44317923decc.pdf
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b44317923decc.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287653
#rows are 608706
output$download 1...
saving 'login and webservicepassword' ...
output$scan.frequency <- renderPlot
Warning: Removed 29 rows containing missing values (`geom_line()`).
#rows are 608706
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b44317c0a3d4b.pdf
Warning: Removed 29 rows containing missing values (`geom_line()`).
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b44317c0a3d4b.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287654
#rows are 608706
output$download 1...
#rows are 608706
output$download 2...
ggsave to file /tmp/RtmpU4ZWCa/rawDiag-3b44314191f707.pdf
generated pdf
/tmp/RtmpU4ZWCa/rawDiag-3b44314191f707.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287656
#rows are 608706
output$download 1...
`geom_smooth()` using formula = 'y ~ x'
#rows are 608706
output$download 2...
#rows are 608706
output$download 2...
output$tic.basepeak <- renderPlot({
#rows are 608706
output$download 2...
output$scan.frequency <- renderPlot
Warning: Removed 29 rows containing missing values (`geom_line()`).
#rows are 608706
output$download 2...
`geom_smooth()` using formula = 'y ~ x'