Listening on http://127.0.0.1:46869
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: protViz
Loading required package: rawDiag
Loading required package: parallel
Loading required package: tidyr
Loading required package: rmarkdown
Loading required package: base64enc
Loading required package: ggplot2
Loading required package: lattice
Loading required package: PKI



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5002/.
DEBUG XXX   https://fgcz-c-072.uzh.ch:5002/
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
bfabricConnectionWorking TRUE
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
'empdegree' found.
saving 'login and webservicepassword' ...
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5002/.
DEBUG XXX   https://fgcz-c-072.uzh.ch:5002/
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
bfabricConnectionWorking TRUE
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/
'empdegree' found.
saving 'login and webservicepassword' ...
DEBUG XXX cpanse ff0cf7fe17d5fdf3b9ea03e6647dcc2f https://fgcz-c-072.uzh.ch:5002/



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5002/.
DEBUG XXX   https://fgcz-c-072.uzh.ch:5002/
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
DEBUG XXX jonas 51cf80e8eedc89da66ff9fdac5478549 https://fgcz-c-072.uzh.ch:5002/
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
bfabricConnectionWorking TRUE
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
'empdegree' found.
saving 'login and webservicepassword' ...
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
output$employee <- renderUI({
DEBUG XXX jonas 51cf80e8eedc89da66ff9fdac5478549 https://fgcz-c-072.uzh.ch:5002/
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
bfabricConnectionWorking TRUE
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
'empdegree' found.
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5002/.
DEBUG XXX   https://fgcz-c-072.uzh.ch:5002/
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
bfabricConnectionWorking TRUE
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
'empdegree' found.
saving 'login and webservicepassword' ...
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_005_S408772_Kuppfer_KF_50_enriched_DDA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 63155
output$tic.basepeak <- renderPlot({
#rows are 63155
output$download 2...
saving 'login and webservicepassword' ...
ggsave to file /tmp/Rtmp7Z6zXb/rawDiag-2cd8d7c671929.pdf
generated pdf
/tmp/Rtmp7Z6zXb/rawDiag-2cd8d7c671929.pdf
bfabricShiny::uploadResource ...
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
The current plot is available as workunit 287719
#rows are 63155
output$download 1...
saving 'login and webservicepassword' ...



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5002/.
DEBUG XXX   https://fgcz-c-072.uzh.ch:5002/
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
bfabricConnectionWorking TRUE
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
'empdegree' found.
saving 'login and webservicepassword' ...
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
DEBUG XXX jonas 7b174a20ed6cdfb737525ffa95aa2d2a https://fgcz-c-072.uzh.ch:5002/
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...


Execution halted