Listening on http://127.0.0.1:35941
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: protViz
Loading required package: rawDiag
Loading required package: parallel
Loading required package: tidyr
Loading required package: rmarkdown
Loading required package: base64enc
Loading required package: ggplot2
Loading required package: lattice
Loading required package: PKI



#rows are 0
/scratch/cpanse/



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5002/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5002/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning: The select input "bfabric8-workunit" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic.
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_014_S491581_Ubv15_me_1_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_013_S491593_Ubv15_me_2_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_012_S491594_Ubv15_alk_2_Group_5.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_010_S491582_Ubv15_alk_1_Group_5.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_002_S491591_Ubv21_alk_2_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_004_S491580_Ubv21_cl_1_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_006_S491590_Ubv21_me_2_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_009_S491583_Ubv15_cl_1_Group_6.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_007_S491579_Ubv21_alk_1_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_003_S491592_Ubv21_cl_2_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_011_S491595_Ubv15_cl_2_Group_6.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31329/Proteomics/QEXACTIVEHF_2/riederm_20230404_block_course/20230404_005_S489663_Ubv21_me_1_Group_1.raw qc ...
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
MasterScanNumber calculated
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 356381
output$tic.basepeak <- renderPlot({
#rows are 356381
output$download 2...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
output$tic.basepeak <- renderPlot({
#rows are 356381
output$download 2...
ggsave to file /tmp/RtmpIalEtE/rawDiag-6b3881520fce.pdf
generated pdf
/tmp/RtmpIalEtE/rawDiag-6b3881520fce.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287741
#rows are 356381
output$download 1...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
output$scan.frequency <- renderPlot
Warning: Removed 29 rows containing missing values (`geom_line()`).
#rows are 356381
output$download 2...
ggsave to file /tmp/RtmpIalEtE/rawDiag-6b3884e5c8f3.pdf
Warning: Removed 29 rows containing missing values (`geom_line()`).
generated pdf
/tmp/RtmpIalEtE/rawDiag-6b3884e5c8f3.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287742
#rows are 356381
output$download 1...
`geom_smooth()` using formula = 'y ~ x'
#rows are 356381
output$download 2...
ggsave to file /tmp/RtmpIalEtE/rawDiag-6b3887bcadad8.pdf
`geom_smooth()` using formula = 'y ~ x'
generated pdf
/tmp/RtmpIalEtE/rawDiag-6b3887bcadad8.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287743
#rows are 356381
output$download 1...
#rows are 356381
output$download 2...
ggsave to file /tmp/RtmpIalEtE/rawDiag-6b3881af19dfa.pdf
generated pdf
/tmp/RtmpIalEtE/rawDiag-6b3881af19dfa.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287744
#rows are 356381
output$download 1...
#rows are 356381
output$download 2...
ggsave to file /tmp/RtmpIalEtE/rawDiag-6b3881e4dd922.pdf
generated pdf
/tmp/RtmpIalEtE/rawDiag-6b3881e4dd922.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 287745
#rows are 356381
output$download 1...


Execution halted