Listening on http://127.0.0.1:33161 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5002/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_012_S498789_BioID-TDP-43_WT_A_Wild_Type__WT_.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_016_S498801_BioID-TDP-43_WT_noDox_A_Untreated.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_002_S498799_BioID-GFP1-9_B_Control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_003_S498795_BioID-TDP-43_RRMm_A_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_004_S498800_BioID-GFP1-9_C_Control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_008_S498797_BioID-TDP-43_RRMm_C_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_006_S498796_BioID-TDP-43_RRMm_B_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_015_S498798_BioID-GFP1-9_A_Control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_011_S498790_BioID-TDP-43_WT_B_Wild_Type__WT_.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_013_S498793_BioID-TDP-43_6M_B_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31525/Proteomics/LUMOS_1/analytic_20230503/20230503_C31525_007_S498803_BioID-TDP-43_WT_noDox_C_Untreated.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values #rows are 387959 output$tic.basepeak <- renderPlot({ #rows are 387959 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpF6toIv/rawDiag-9a902711ab851.pdf generated pdf /tmp/RtmpF6toIv/rawDiag-9a902711ab851.pdf bfabricShiny::uploadResource ... The current plot is available as workunit 288685 #rows are 387959 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 387959 output$download 2... ggsave to file /tmp/RtmpF6toIv/rawDiag-9a902f637771.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpF6toIv/rawDiag-9a902f637771.pdf bfabricShiny::uploadResource ... The current plot is available as workunit 288686 #rows are 387959 output$download 1... #rows are 387959 output$download 2... #rows are 387959 output$download 2... #rows are 387959 output$download 2... #rows are 387959 output$download 2... ggsave to file /tmp/RtmpF6toIv/rawDiag-9a9023bebd688.pdf generated pdf /tmp/RtmpF6toIv/rawDiag-9a9023bebd688.pdf bfabricShiny::uploadResource ... The current plot is available as workunit 288687 #rows are 387959 output$download 1... #rows are 387959 output$download 2... Execution halted