Listening on http://127.0.0.1:40383
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: protViz
Loading required package: rawDiag
Loading required package: parallel
Loading required package: tidyr
Loading required package: rmarkdown
Loading required package: base64enc
Loading required package: ggplot2
Loading required package: lattice
Loading required package: PKI


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_003_S509064_EPIC-XS-0000405_sample_A2_C3.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 76241
output$tic.basepeak <- renderPlot({
#rows are 76241
output$download 2...
saving 'login and webservicepassword' ...
ggsave to file /tmp/Rtmpb0Rzha/rawDiag-21eb7f4576fbeb.pdf
generated pdf
/tmp/Rtmpb0Rzha/rawDiag-21eb7f4576fbeb.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 
ggsave to file /tmp/Rtmpb0Rzha/rawDiag-21eb7f700fbf2c.pdf
generated pdf
/tmp/Rtmpb0Rzha/rawDiag-21eb7f700fbf2c.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 
ggsave to file /tmp/Rtmpb0Rzha/rawDiag-21eb7f24cf0087.pdf
generated pdf
/tmp/Rtmpb0Rzha/rawDiag-21eb7f24cf0087.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit 
ggsave to file /tmp/Rtmpb0Rzha/rawDiag-21eb7f77f176fa.pdf
generated pdf
/tmp/Rtmpb0Rzha/rawDiag-21eb7f77f176fa.pdf
bfabricShiny::uploadResource ...
The current plot is available as workunit