Listening on http://127.0.0.1:40103 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... #rows are 0 /scratch/cpanse/ #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_060_S509106_EPIC-XS-0000405_sample_C44_CT3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_051_S509099_EPIC-XS-0000405_sample_C37_NT3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_042_S509093_EPIC-XS-0000405_sample_C31_DT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_062_S509107_EPIC-XS-0000405_sample_C45_DT1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_057_S509103_EPIC-XS-0000405_sample_C41_NT1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_052_S509100_EPIC-XS-0000405_sample_C38_NT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_047_S509096_EPIC-XS-0000405_sample_C34_CT1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_049_S509098_EPIC-XS-0000405_sample_C36_NB1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_046_S509095_EPIC-XS-0000405_sample_C33_FT3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_048_S509097_EPIC-XS-0000405_sample_C35_DT3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_058_S509104_EPIC-XS-0000405_sample_C42_NB3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_059_S509105_EPIC-XS-0000405_sample_C43_CT2.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_053_S509101_EPIC-XS-0000405_sample_C39_NB2.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_054_S509102_EPIC-XS-0000405_sample_C40_FT1.raw qc ... renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_043_S509094_EPIC-XS-0000405_sample_C32_FT2.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 1146985 output$tic.basepeak <- renderPlot({ #rows are 1146985 output$download 2... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 /scratch/cpanse/ output$tic.basepeak <- renderPlot({ executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_042_S509093_EPIC-XS-0000405_sample_C31_DT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_048_S509097_EPIC-XS-0000405_sample_C35_DT3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_062_S509107_EPIC-XS-0000405_sample_C45_DT1.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 229395 output$download 2... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 229395 output$download 2... DEBUG renderPlot plotQCs #rows are 229395 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 229395 output$download 2... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_008_S509068_EPIC-XS-0000405_sample_A6_P1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_027_S509082_EPIC-XS-0000405_sample_B20_K1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_025_S509080_EPIC-XS-0000405_sample_B18_G3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_020_S509077_EPIC-XS-0000405_sample_B15_F2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_059_S509105_EPIC-XS-0000405_sample_C43_CT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_010_S509070_EPIC-XS-0000405_sample_A8_c2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_052_S509100_EPIC-XS-0000405_sample_C38_NT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_015_S509073_EPIC-XS-0000405_sample_A11_p3_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_043_S509094_EPIC-XS-0000405_sample_C32_FT2.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode output$tic.basepeak <- renderPlot({ #rows are 686166 output$download 2... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_008_S509068_EPIC-XS-0000405_sample_A6_P1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_027_S509082_EPIC-XS-0000405_sample_B20_K1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_025_S509080_EPIC-XS-0000405_sample_B18_G3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_020_S509077_EPIC-XS-0000405_sample_B15_F2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_057_S509103_EPIC-XS-0000405_sample_C41_NT1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_059_S509105_EPIC-XS-0000405_sample_C43_CT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_010_S509070_EPIC-XS-0000405_sample_A8_c2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_052_S509100_EPIC-XS-0000405_sample_C38_NT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_015_S509073_EPIC-XS-0000405_sample_A11_p3_rep.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode output$tic.basepeak <- renderPlot({ #rows are 686740 output$download 2... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_008_S509068_EPIC-XS-0000405_sample_A6_P1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_048_S509097_EPIC-XS-0000405_sample_C35_DT3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_027_S509082_EPIC-XS-0000405_sample_B20_K1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_025_S509080_EPIC-XS-0000405_sample_B18_G3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_020_S509077_EPIC-XS-0000405_sample_B15_F2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_057_S509103_EPIC-XS-0000405_sample_C41_NT1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_037_S509089_EPIC-XS-0000405_sample_B27_T2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_004_S509065_EPIC-XS-0000405_sample_A3_P3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_059_S509105_EPIC-XS-0000405_sample_C43_CT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_010_S509070_EPIC-XS-0000405_sample_A8_c2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_052_S509100_EPIC-XS-0000405_sample_C38_NT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_015_S509073_EPIC-XS-0000405_sample_A11_p3_rep.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode output$tic.basepeak <- renderPlot({ #rows are 904440 output$download 2... #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_008_S509068_EPIC-XS-0000405_sample_A6_P1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_048_S509097_EPIC-XS-0000405_sample_C35_DT3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_027_S509082_EPIC-XS-0000405_sample_B20_K1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_025_S509080_EPIC-XS-0000405_sample_B18_G3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_020_S509077_EPIC-XS-0000405_sample_B15_F2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_037_S509089_EPIC-XS-0000405_sample_B27_T2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_004_S509065_EPIC-XS-0000405_sample_A3_P3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_059_S509105_EPIC-XS-0000405_sample_C43_CT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_010_S509070_EPIC-XS-0000405_sample_A8_c2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_052_S509100_EPIC-XS-0000405_sample_C38_NT2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_015_S509073_EPIC-XS-0000405_sample_A11_p3_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_054_S509102_EPIC-XS-0000405_sample_C40_FT1.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode output$tic.basepeak <- renderPlot({ #rows are 902868 output$download 2... ggsave to file /tmp/RtmplAO9Mf/rawDiag-3bc70c19013aa3.pdf generated pdf /tmp/RtmplAO9Mf/rawDiag-3bc70c19013aa3.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 289916, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31738), created = "2023-06-09 10:49:11", createdby = "antdit", deletable = "true", description = "input files:\np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_008_S509068_EPIC-XS-0000405_sample_A6_P1.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_010_S509070_EPIC-XS-0000405_sample_A8_c2.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_015_S509073_EPIC-XS-0000405_sample_A11_p3_rep.raw\np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_025_S509080_EPIC-XS-0000405_sample_B18_G3.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_020_S509077_EPIC-XS-0000405_sample_B15_F2.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_027_S509082_EPIC-XS-0000405_sample_B20_K1.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_052_S509100_EPIC-XS-0000405_sample_C38_NT2.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_059_S509105_EPIC-XS-0000405_sample_C43_CT2.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_048_S509097_EPIC-XS-0000405_sample_C35_DT3.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_037_S509089_EPIC-XS-0000405_sample_B27_T2.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_004_S509065_EPIC-XS-0000405_sample_A3_P3.raw \np31738/Proteomics/EXPLORIS_1/analytic_20230601/20230601_C31738_054_S509102_EPIC-XS-0000405_sample_C40_FT1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.21.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", modified = "2023-06-09 10:49:11", modifiedby = "antdit", name = "TIC and basepeak plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2307400, container = list(`_classname` = "order", `_id` = 31738), created = "2023-06-09 10:49:12", createdby = "antdit", deletable = "true", filechecksum = "a3a34d386449cd49b0b15a8b57410989", junk = "false", modified = "2023-06-09 10:49:12", modifiedby = "antdit", name = "WU289916-20230609-1049-rawDiag.pdf", relativepath = "container_31738/workunit_289916/WU289916-20230609-1049-rawDiag.pdf", size = "748506", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31738/workunit_289916/WU289916-20230609-1049-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31738/workunit_289916/WU289916-20230609-1049-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 289916))) The current plot is available as workunit 289916 #rows are 902868 output$download 1... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 /scratch/cpanse/ #rows are 0 /scratch/cpanse/ #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE #rows are 0 /scratch/cpanse/ Warning in value[[3L]](cond) : Error decrypting field. (#999, 'error:0407109F:rsa routines:RSA_padding_check_PKCS1_type_2:pkcs decoding error') Passing through unaltered. Warning in value[[3L]](cond) : Error decrypting field. (#999, 'error:04065072:rsa routines:rsa_ossl_private_decrypt:padding check failed') Passing through unaltered. Warning in value[[3L]](cond) : Error decrypting field. (#999, 'error:0407109F:rsa routines:RSA_padding_check_PKCS1_type_2:pkcs decoding error') Passing through unaltered. saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_010_S516448_31749_multiplexed_rep1_blue.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_006_S516446_31749_multiplexed_rep1_yellow.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_002_S516190_31749_multiplexed_rep1_red.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_004_S516415_31749_multiplexed_rep1_orange.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_008_S516447_31749_multiplexed_rep1_green.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 63959 output$tic.basepeak <- renderPlot({ #rows are 63959 output$download 2... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. output$tic.basepeak <- renderPlot({ #rows are 63959 output$download 2... ggsave to file /tmp/RtmplAO9Mf/rawDiag-3bc70c16a658e0.pdf generated pdf /tmp/RtmplAO9Mf/rawDiag-3bc70c16a658e0.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 289925, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31749), created = "2023-06-09 11:28:55", createdby = "tobiasko", deletable = "true", description = "input files:\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_008_S516447_31749_multiplexed_rep1_green.raw \np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_010_S516448_31749_multiplexed_rep1_blue.raw \np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_006_S516446_31749_multiplexed_rep1_yellow.raw\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_004_S516415_31749_multiplexed_rep1_orange.raw\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_002_S516190_31749_multiplexed_rep1_red.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.21.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2307149), list(`_classname` = "resource", `_id` = 2307148), list(`_classname` = "resource", `_id` = 2307147), list(`_classname` = "resource", `_id` = 2307146), list(`_classname` = "resource", `_id` = 2307145)), modified = "2023-06-09 11:28:55", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2307449, container = list(`_classname` = "order", `_id` = 31749), created = "2023-06-09 11:28:56", createdby = "tobiasko", deletable = "true", filechecksum = "74ae462beeeaebe7a69a27f0d2d4c797", junk = "false", modified = "2023-06-09 11:28:56", modifiedby = "tobiasko", name = "WU289925-20230609-1128-rawDiag.pdf", relativepath = "container_31749/workunit_289925/WU289925-20230609-1128-rawDiag.pdf", size = "262302", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31749/workunit_289925/WU289925-20230609-1128-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31749/workunit_289925/WU289925-20230609-1128-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 289925))) The current plot is available as workunit 289925 #rows are 63959 output$download 1... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 63959 output$download 2... #rows are 63959 output$download 2... ggsave to file /tmp/RtmplAO9Mf/rawDiag-3bc70c117c4f92.pdf generated pdf /tmp/RtmplAO9Mf/rawDiag-3bc70c117c4f92.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 289926, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31749), created = "2023-06-09 11:29:41", createdby = "tobiasko", deletable = "true", description = "input files:\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_008_S516447_31749_multiplexed_rep1_green.raw \np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_010_S516448_31749_multiplexed_rep1_blue.raw \np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_006_S516446_31749_multiplexed_rep1_yellow.raw\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_004_S516415_31749_multiplexed_rep1_orange.raw\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_002_S516190_31749_multiplexed_rep1_red.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.21.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2307149), list(`_classname` = "resource", `_id` = 2307148), list(`_classname` = "resource", `_id` = 2307147), list(`_classname` = "resource", `_id` = 2307146), list(`_classname` = "resource", `_id` = 2307145)), modified = "2023-06-09 11:29:41", modifiedby = "tobiasko", name = "lock mass correction plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2307451, container = list(`_classname` = "order", `_id` = 31749), created = "2023-06-09 11:29:42", createdby = "tobiasko", deletable = "true", filechecksum = "f583eddf719788f3e325867ad50af56a", junk = "false", modified = "2023-06-09 11:29:43", modifiedby = "tobiasko", name = "WU289926-20230609-1129-rawDiag.pdf", relativepath = "container_31749/workunit_289926/WU289926-20230609-1129-rawDiag.pdf", size = "144548", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31749/workunit_289926/WU289926-20230609-1129-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31749/workunit_289926/WU289926-20230609-1129-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 289926))) The current plot is available as workunit 289926 #rows are 63959 output$download 1... #rows are 63959 output$download 2... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_016_S516586_31749_multiplexed_rep2_yellow.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_020_S516589_31749_multiplexed_rep2_blue.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_014_S516585_31749_multiplexed_rep2_orange.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_018_S516588_31749_multiplexed_rep2_green.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_012_S516574_31749_multiplexed_rep2_red.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 63707 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 63707 output$download 2... ggsave to file /tmp/RtmplAO9Mf/rawDiag-3bc70c2d525630.pdf generated pdf /tmp/RtmplAO9Mf/rawDiag-3bc70c2d525630.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 289927, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31749), created = "2023-06-09 11:31:20", createdby = "tobiasko", deletable = "true", description = "input files:\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_016_S516586_31749_multiplexed_rep2_yellow.raw\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_020_S516589_31749_multiplexed_rep2_blue.raw \np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_014_S516585_31749_multiplexed_rep2_orange.raw\np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_018_S516588_31749_multiplexed_rep2_green.raw \np31749/Proteomics/QEXACTIVE_1/analytic_20230607/20230607_C31749_012_S516574_31749_multiplexed_rep2_red.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.21.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2307154), list(`_classname` = "resource", `_id` = 2307153), list(`_classname` = "resource", `_id` = 2307152), list(`_classname` = "resource", `_id` = 2307151), list(`_classname` = "resource", `_id` = 2307150)), modified = "2023-06-09 11:31:20", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2307452, container = list(`_classname` = "order", `_id` = 31749), created = "2023-06-09 11:31:21", createdby = "tobiasko", deletable = "true", filechecksum = "9ffcf07d0b2976cade55af81566c1b42", junk = "false", modified = "2023-06-09 11:31:21", modifiedby = "tobiasko", name = "WU289927-20230609-1131-rawDiag.pdf", relativepath = "container_31749/workunit_289927/WU289927-20230609-1131-rawDiag.pdf", size = "263371", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31749/workunit_289927/WU289927-20230609-1131-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31749/workunit_289927/WU289927-20230609-1131-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 289927))) The current plot is available as workunit 289927 #rows are 63707 output$download 1... #rows are 63707 output$download 2... #rows are 63707 output$download 2... #rows are 0 /scratch/cpanse/ #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.