Listening on http://127.0.0.1:43683 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_015_S521039_Lct_3UTR_BioRep2_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_021_S521177_Lct_3UTR_BioRep1_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_010_S521045_Net1_3UTR_BioRep3_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_003_S521047_FLuc_CDS_BioRep3_Control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_016_S521042_FLuc_CDS_BioRep2_Control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_014_S521176_Apob_3UTR_BioRep1_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_008_S521179_Net1_motifs_BioRep1_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_022_S521038_Apob_3UTR_BioRep2_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_002_S521043_Apob_3UTR_BioRep3_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_004_S521044_Lct_3UTR_BioRep3_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_005_S521040_Net1_3UTR_BioRep2_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_017_S521178_Net1_3UTR_BioRep1_Group_3.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_009_S521180_FLuc_CDS_BioRep1_Control.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_020_S521041_Net1_motifs_BioRep2_Group_4.raw qc ... renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_011_S521046_Net1_motifs_BioRep3_Group_4.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 426614 output$tic.basepeak <- renderPlot({ #rows are 426614 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpaThfni/rawDiag-2197de5d065e4b.pdf generated pdf /tmp/RtmpaThfni/rawDiag-2197de5d065e4b.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 290230, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:35:40", createdby = "tobiasko", deletable = "true", description = "input files:\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_022_S521038_Apob_3UTR_BioRep2_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_008_S521179_Net1_motifs_BioRep1_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_005_S521040_Net1_3UTR_BioRep2_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_021_S521177_Lct_3UTR_BioRep1_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_017_S521178_Net1_3UTR_BioRep1_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_016_S521042_FLuc_CDS_BioRep2_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_010_S521045_Net1_3UTR_BioRep3_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_002_S521043_Apob_3UTR_BioRep3_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_014_S521176_Apob_3UTR_BioRep1_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_003_S521047_FLuc_CDS_BioRep3_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_004_S521044_Lct_3UTR_BioRep3_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_015_S521039_Lct_3UTR_BioRep2_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_009_S521180_FLuc_CDS_BioRep1_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_020_S521041_Net1_motifs_BioRep2_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_011_S521046_Net1_motifs_BioRep3_Group_4.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2315244), list(`_classname` = "resource", `_id` = 2315243), list(`_classname` = "resource", `_id` = 2315242), list(`_classname` = "resource", `_id` = 2315241), list(`_classname` = "resource", `_id` = 2315240), list(`_classname` = "resource", `_id` = 2315239), list(`_classname` = "resource", `_id` = 2315238), list(`_classname` = "resource", `_id` = 2315237), list(`_classname` = "resource", `_id` = 2315236), list( `_classname` = "resource", `_id` = 2315235), list(`_classname` = "resource", `_id` = 2315234), list(`_classname` = "resource", `_id` = 2315233), list(`_classname` = "resource", `_id` = 2315232), list(`_classname` = "resource", `_id` = 2315231), list(`_classname` = "resource", `_id` = 2315230)), modified = "2023-06-19 11:35:40", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2316784, container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:35:42", createdby = "tobiasko", deletable = "true", filechecksum = "516044aa9f281c03706396b53bcc058e", junk = "false", modified = "2023-06-19 11:35:42", modifiedby = "tobiasko", name = "WU290230-20230619-1135-rawDiag.pdf", relativepath = "container_31993/workunit_290230/WU290230-20230619-1135-rawDiag.pdf", size = "537698", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31993/workunit_290230/WU290230-20230619-1135-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31993/workunit_290230/WU290230-20230619-1135-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 290230))) The current plot is available as workunit 290230 #rows are 426614 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 426614 output$download 2... ggsave to file /tmp/RtmpaThfni/rawDiag-2197de5c6efe42.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpaThfni/rawDiag-2197de5c6efe42.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 290231, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:37:14", createdby = "tobiasko", deletable = "true", description = "input files:\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_022_S521038_Apob_3UTR_BioRep2_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_008_S521179_Net1_motifs_BioRep1_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_005_S521040_Net1_3UTR_BioRep2_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_021_S521177_Lct_3UTR_BioRep1_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_017_S521178_Net1_3UTR_BioRep1_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_016_S521042_FLuc_CDS_BioRep2_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_010_S521045_Net1_3UTR_BioRep3_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_002_S521043_Apob_3UTR_BioRep3_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_014_S521176_Apob_3UTR_BioRep1_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_003_S521047_FLuc_CDS_BioRep3_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_004_S521044_Lct_3UTR_BioRep3_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_015_S521039_Lct_3UTR_BioRep2_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_009_S521180_FLuc_CDS_BioRep1_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_020_S521041_Net1_motifs_BioRep2_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_011_S521046_Net1_motifs_BioRep3_Group_4.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2315244), list(`_classname` = "resource", `_id` = 2315243), list(`_classname` = "resource", `_id` = 2315242), list(`_classname` = "resource", `_id` = 2315241), list(`_classname` = "resource", `_id` = 2315240), list(`_classname` = "resource", `_id` = 2315239), list(`_classname` = "resource", `_id` = 2315238), list(`_classname` = "resource", `_id` = 2315237), list(`_classname` = "resource", `_id` = 2315236), list( `_classname` = "resource", `_id` = 2315235), list(`_classname` = "resource", `_id` = 2315234), list(`_classname` = "resource", `_id` = 2315233), list(`_classname` = "resource", `_id` = 2315232), list(`_classname` = "resource", `_id` = 2315231), list(`_classname` = "resource", `_id` = 2315230)), modified = "2023-06-19 11:37:14", modifiedby = "tobiasko", name = "scan frequency plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2316785, container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:37:16", createdby = "tobiasko", deletable = "true", filechecksum = "827422838aed87941a13a5e82ed6d4c7", junk = "false", modified = "2023-06-19 11:37:16", modifiedby = "tobiasko", name = "WU290231-20230619-1137-rawDiag.pdf", relativepath = "container_31993/workunit_290231/WU290231-20230619-1137-rawDiag.pdf", size = "439420", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31993/workunit_290231/WU290231-20230619-1137-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31993/workunit_290231/WU290231-20230619-1137-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 290231))) The current plot is available as workunit 290231 #rows are 426614 output$download 1... #rows are 426614 output$download 2... ggsave to file /tmp/RtmpaThfni/rawDiag-2197de2cd76e33.pdf generated pdf /tmp/RtmpaThfni/rawDiag-2197de2cd76e33.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 290232, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:38:42", createdby = "tobiasko", deletable = "true", description = "input files:\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_022_S521038_Apob_3UTR_BioRep2_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_008_S521179_Net1_motifs_BioRep1_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_005_S521040_Net1_3UTR_BioRep2_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_021_S521177_Lct_3UTR_BioRep1_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_017_S521178_Net1_3UTR_BioRep1_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_016_S521042_FLuc_CDS_BioRep2_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_010_S521045_Net1_3UTR_BioRep3_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_002_S521043_Apob_3UTR_BioRep3_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_014_S521176_Apob_3UTR_BioRep1_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_003_S521047_FLuc_CDS_BioRep3_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_004_S521044_Lct_3UTR_BioRep3_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_015_S521039_Lct_3UTR_BioRep2_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_009_S521180_FLuc_CDS_BioRep1_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_020_S521041_Net1_motifs_BioRep2_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_011_S521046_Net1_motifs_BioRep3_Group_4.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2315244), list(`_classname` = "resource", `_id` = 2315243), list(`_classname` = "resource", `_id` = 2315242), list(`_classname` = "resource", `_id` = 2315241), list(`_classname` = "resource", `_id` = 2315240), list(`_classname` = "resource", `_id` = 2315239), list(`_classname` = "resource", `_id` = 2315238), list(`_classname` = "resource", `_id` = 2315237), list(`_classname` = "resource", `_id` = 2315236), list( `_classname` = "resource", `_id` = 2315235), list(`_classname` = "resource", `_id` = 2315234), list(`_classname` = "resource", `_id` = 2315233), list(`_classname` = "resource", `_id` = 2315232), list(`_classname` = "resource", `_id` = 2315231), list(`_classname` = "resource", `_id` = 2315230)), modified = "2023-06-19 11:38:42", modifiedby = "tobiasko", name = "scan time plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2316786, container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:38:44", createdby = "tobiasko", deletable = "true", filechecksum = "b0692fe9aae9a6673be0fc8ad6a5e8b7", junk = "false", modified = "2023-06-19 11:38:44", modifiedby = "tobiasko", name = "WU290232-20230619-1138-rawDiag.pdf", relativepath = "container_31993/workunit_290232/WU290232-20230619-1138-rawDiag.pdf", size = "2189906", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31993/workunit_290232/WU290232-20230619-1138-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31993/workunit_290232/WU290232-20230619-1138-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 290232))) The current plot is available as workunit 290232 #rows are 426614 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 426614 output$download 2... ggsave to file /tmp/RtmpaThfni/rawDiag-2197de31ff8b2b.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpaThfni/rawDiag-2197de31ff8b2b.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 290233, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:39:47", createdby = "tobiasko", deletable = "true", description = "input files:\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_022_S521038_Apob_3UTR_BioRep2_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_008_S521179_Net1_motifs_BioRep1_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_005_S521040_Net1_3UTR_BioRep2_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_021_S521177_Lct_3UTR_BioRep1_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_017_S521178_Net1_3UTR_BioRep1_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_016_S521042_FLuc_CDS_BioRep2_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_010_S521045_Net1_3UTR_BioRep3_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_002_S521043_Apob_3UTR_BioRep3_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_014_S521176_Apob_3UTR_BioRep1_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_003_S521047_FLuc_CDS_BioRep3_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_004_S521044_Lct_3UTR_BioRep3_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_015_S521039_Lct_3UTR_BioRep2_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_009_S521180_FLuc_CDS_BioRep1_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_020_S521041_Net1_motifs_BioRep2_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_011_S521046_Net1_motifs_BioRep3_Group_4.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2315244), list(`_classname` = "resource", `_id` = 2315243), list(`_classname` = "resource", `_id` = 2315242), list(`_classname` = "resource", `_id` = 2315241), list(`_classname` = "resource", `_id` = 2315240), list(`_classname` = "resource", `_id` = 2315239), list(`_classname` = "resource", `_id` = 2315238), list(`_classname` = "resource", `_id` = 2315237), list(`_classname` = "resource", `_id` = 2315236), list( `_classname` = "resource", `_id` = 2315235), list(`_classname` = "resource", `_id` = 2315234), list(`_classname` = "resource", `_id` = 2315233), list(`_classname` = "resource", `_id` = 2315232), list(`_classname` = "resource", `_id` = 2315231), list(`_classname` = "resource", `_id` = 2315230)), modified = "2023-06-19 11:39:47", modifiedby = "tobiasko", name = "cycle load plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2316787, container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:39:49", createdby = "tobiasko", deletable = "true", filechecksum = "f79a4a0733be1cad78d7c43b9d311cd0", junk = "false", modified = "2023-06-19 11:39:49", modifiedby = "tobiasko", name = "WU290233-20230619-1139-rawDiag.pdf", relativepath = "container_31993/workunit_290233/WU290233-20230619-1139-rawDiag.pdf", size = "1684730", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31993/workunit_290233/WU290233-20230619-1139-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31993/workunit_290233/WU290233-20230619-1139-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 290233))) The current plot is available as workunit 290233 #rows are 426614 output$download 1... #rows are 426614 output$download 2... ggsave to file /tmp/RtmpaThfni/rawDiag-2197de5f1dbe5f.pdf generated pdf /tmp/RtmpaThfni/rawDiag-2197de5f1dbe5f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 290234, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:40:04", createdby = "tobiasko", deletable = "true", description = "input files:\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_022_S521038_Apob_3UTR_BioRep2_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_008_S521179_Net1_motifs_BioRep1_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_005_S521040_Net1_3UTR_BioRep2_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_021_S521177_Lct_3UTR_BioRep1_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_017_S521178_Net1_3UTR_BioRep1_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_016_S521042_FLuc_CDS_BioRep2_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_010_S521045_Net1_3UTR_BioRep3_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_002_S521043_Apob_3UTR_BioRep3_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_014_S521176_Apob_3UTR_BioRep1_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_003_S521047_FLuc_CDS_BioRep3_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_004_S521044_Lct_3UTR_BioRep3_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_015_S521039_Lct_3UTR_BioRep2_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_009_S521180_FLuc_CDS_BioRep1_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_020_S521041_Net1_motifs_BioRep2_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_011_S521046_Net1_motifs_BioRep3_Group_4.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2315244), list(`_classname` = "resource", `_id` = 2315243), list(`_classname` = "resource", `_id` = 2315242), list(`_classname` = "resource", `_id` = 2315241), list(`_classname` = "resource", `_id` = 2315240), list(`_classname` = "resource", `_id` = 2315239), list(`_classname` = "resource", `_id` = 2315238), list(`_classname` = "resource", `_id` = 2315237), list(`_classname` = "resource", `_id` = 2315236), list( `_classname` = "resource", `_id` = 2315235), list(`_classname` = "resource", `_id` = 2315234), list(`_classname` = "resource", `_id` = 2315233), list(`_classname` = "resource", `_id` = 2315232), list(`_classname` = "resource", `_id` = 2315231), list(`_classname` = "resource", `_id` = 2315230)), modified = "2023-06-19 11:40:04", modifiedby = "tobiasko", name = "lock mass correction plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2316788, container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:40:05", createdby = "tobiasko", deletable = "true", filechecksum = "941ffce4495da97430d1ac3ad28c1e5c", junk = "false", modified = "2023-06-19 11:40:05", modifiedby = "tobiasko", name = "WU290234-20230619-1140-rawDiag.pdf", relativepath = "container_31993/workunit_290234/WU290234-20230619-1140-rawDiag.pdf", size = "305136", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31993/workunit_290234/WU290234-20230619-1140-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31993/workunit_290234/WU290234-20230619-1140-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 290234))) The current plot is available as workunit 290234 #rows are 426614 output$download 1... #rows are 426614 output$download 2... ggsave to file /tmp/RtmpaThfni/rawDiag-2197de69c7ff90.pdf generated pdf /tmp/RtmpaThfni/rawDiag-2197de69c7ff90.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 290235, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:40:49", createdby = "tobiasko", deletable = "true", description = "input files:\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_022_S521038_Apob_3UTR_BioRep2_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_008_S521179_Net1_motifs_BioRep1_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_005_S521040_Net1_3UTR_BioRep2_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_021_S521177_Lct_3UTR_BioRep1_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_017_S521178_Net1_3UTR_BioRep1_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_016_S521042_FLuc_CDS_BioRep2_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_010_S521045_Net1_3UTR_BioRep3_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_002_S521043_Apob_3UTR_BioRep3_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_014_S521176_Apob_3UTR_BioRep1_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_003_S521047_FLuc_CDS_BioRep3_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_004_S521044_Lct_3UTR_BioRep3_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_015_S521039_Lct_3UTR_BioRep2_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_009_S521180_FLuc_CDS_BioRep1_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_020_S521041_Net1_motifs_BioRep2_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_011_S521046_Net1_motifs_BioRep3_Group_4.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2315244), list(`_classname` = "resource", `_id` = 2315243), list(`_classname` = "resource", `_id` = 2315242), list(`_classname` = "resource", `_id` = 2315241), list(`_classname` = "resource", `_id` = 2315240), list(`_classname` = "resource", `_id` = 2315239), list(`_classname` = "resource", `_id` = 2315238), list(`_classname` = "resource", `_id` = 2315237), list(`_classname` = "resource", `_id` = 2315236), list( `_classname` = "resource", `_id` = 2315235), list(`_classname` = "resource", `_id` = 2315234), list(`_classname` = "resource", `_id` = 2315233), list(`_classname` = "resource", `_id` = 2315232), list(`_classname` = "resource", `_id` = 2315231), list(`_classname` = "resource", `_id` = 2315230)), modified = "2023-06-19 11:40:49", modifiedby = "tobiasko", name = "injection time plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2316789, container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:40:51", createdby = "tobiasko", deletable = "true", filechecksum = "e8efea30624f1473a52616e6fae61778", junk = "false", modified = "2023-06-19 11:40:51", modifiedby = "tobiasko", name = "WU290235-20230619-1140-rawDiag.pdf", relativepath = "container_31993/workunit_290235/WU290235-20230619-1140-rawDiag.pdf", size = "2070769", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31993/workunit_290235/WU290235-20230619-1140-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31993/workunit_290235/WU290235-20230619-1140-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 290235))) The current plot is available as workunit 290235 #rows are 426614 output$download 1... #rows are 426614 output$download 2... ggsave to file /tmp/RtmpaThfni/rawDiag-2197de2d4121d3.pdf generated pdf /tmp/RtmpaThfni/rawDiag-2197de2d4121d3.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 290236, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:41:08", createdby = "tobiasko", deletable = "true", description = "input files:\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_022_S521038_Apob_3UTR_BioRep2_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_008_S521179_Net1_motifs_BioRep1_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_005_S521040_Net1_3UTR_BioRep2_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_021_S521177_Lct_3UTR_BioRep1_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_017_S521178_Net1_3UTR_BioRep1_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_016_S521042_FLuc_CDS_BioRep2_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_010_S521045_Net1_3UTR_BioRep3_Group_3.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_002_S521043_Apob_3UTR_BioRep3_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_014_S521176_Apob_3UTR_BioRep1_Group_1.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_003_S521047_FLuc_CDS_BioRep3_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_004_S521044_Lct_3UTR_BioRep3_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_015_S521039_Lct_3UTR_BioRep2_Group_2.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_009_S521180_FLuc_CDS_BioRep1_Control.raw \np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_020_S521041_Net1_motifs_BioRep2_Group_4.raw\np31993/Proteomics/EXPLORIS_2/analytic_20230616/20230616_C31993_011_S521046_Net1_motifs_BioRep3_Group_4.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2315244), list(`_classname` = "resource", `_id` = 2315243), list(`_classname` = "resource", `_id` = 2315242), list(`_classname` = "resource", `_id` = 2315241), list(`_classname` = "resource", `_id` = 2315240), list(`_classname` = "resource", `_id` = 2315239), list(`_classname` = "resource", `_id` = 2315238), list(`_classname` = "resource", `_id` = 2315237), list(`_classname` = "resource", `_id` = 2315236), list( `_classname` = "resource", `_id` = 2315235), list(`_classname` = "resource", `_id` = 2315234), list(`_classname` = "resource", `_id` = 2315233), list(`_classname` = "resource", `_id` = 2315232), list(`_classname` = "resource", `_id` = 2315231), list(`_classname` = "resource", `_id` = 2315230)), modified = "2023-06-19 11:41:08", modifiedby = "tobiasko", name = "charge state plot", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2316790, container = list(`_classname` = "order", `_id` = 31993), created = "2023-06-19 11:41:10", createdby = "tobiasko", deletable = "true", filechecksum = "b16fe26e466e52a479030c98f890a0a2", junk = "false", modified = "2023-06-19 11:41:10", modifiedby = "tobiasko", name = "WU290236-20230619-1141-rawDiag.pdf", relativepath = "container_31993/workunit_290236/WU290236-20230619-1141-rawDiag.pdf", size = "13965", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31993/workunit_290236/WU290236-20230619-1141-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31993/workunit_290236/WU290236-20230619-1141-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 290236))) The current plot is available as workunit 290236 #rows are 426614 output$download 1... DEBUG renderPlot DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") plotQCs #rows are 426614 output$download 1... Execution halted