Listening on http://127.0.0.1:45723 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_010_S537029_LMB_2_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_017_S537021_NI_2_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_008_S537022_NI_3_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_003_S537023_NI_4_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_016_S537027_AdV_4_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_015_S537025_AdV_2_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_014_S537031_LMB_4_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_004_S537024_AdV_1_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_009_S537030_LMB_3_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_002_S537020_NI_1_Group_1.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 1698126 output$tic.basepeak <- renderPlot({ #rows are 1698126 output$download 2... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. output$tic.basepeak <- renderPlot({ #rows are 1698126 output$download 2... ggsave to file /tmp/Rtmp4bKGpp/rawDiag-35327e3858f40.pdf generated pdf /tmp/Rtmp4bKGpp/rawDiag-35327e3858f40.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 291852, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32368), created = "2023-07-28 14:07:17", createdby = "spfammatter", deletable = "true", description = "input files:\np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_010_S537029_LMB_2_Group_3.raw\np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_015_S537025_AdV_2_Group_2.raw\np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_004_S537024_AdV_1_Group_2.raw\np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_017_S537021_NI_2_Group_1.raw \np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_016_S537027_AdV_4_Group_2.raw\np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_014_S537031_LMB_4_Group_3.raw\np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_008_S537022_NI_3_Group_1.raw \np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_003_S537023_NI_4_Group_1.raw \np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_009_S537030_LMB_3_Group_3.raw\np32368/Proteomics/EXPLORIS_2/analytic_20230725/20230725_C32368_002_S537020_NI_1_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2338161), list(`_classname` = "resource", `_id` = 2338160), list(`_classname` = "resource", `_id` = 2338159), list(`_classname` = "resource", `_id` = 2338158), list(`_classname` = "resource", `_id` = 2338157), list(`_classname` = "resource", `_id` = 2338156), list(`_classname` = "resource", `_id` = 2338155), list(`_classname` = "resource", `_id` = 2338154), list(`_classname` = "resource", `_id` = 2338153), list( `_classname` = "resource", `_id` = 2338152)), modified = "2023-07-28 14:07:17", modifiedby = "spfammatter", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2339124, container = list(`_classname` = "order", `_id` = 32368), created = "2023-07-28 14:07:19", createdby = "spfammatter", deletable = "true", filechecksum = "2d5e878a5928045b6f3f1d149330bd2a", junk = "false", modified = "2023-07-28 14:07:19", modifiedby = "spfammatter", name = "WU291852-20230728-1407-rawDiag.pdf", relativepath = "container_32368/workunit_291852/WU291852-20230728-1407-rawDiag.pdf", size = "283620", status = "available", storage = list( `_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32368/workunit_291852/WU291852-20230728-1407-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32368/workunit_291852/WU291852-20230728-1407-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 291852))) The current plot is available as workunit 291852 #rows are 1698126 output$download 1... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 /scratch/cpanse/ Execution halted