Listening on http://127.0.0.1:37187 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_007_S547393_KO2_Control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_002_S547392_KO1_Control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_003_S547397_17-2_WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_004_S547396_17-1_WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_008_S547394_16-1_Mutant_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_005_S547395_16-2_Mutant.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 156805 output$tic.basepeak <- renderPlot({ #rows are 156805 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc62ea1dd41.pdf generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc62ea1dd41.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292636, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:18:23", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_004_S547396_17-1_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_007_S547393_KO2_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_003_S547397_17-2_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_002_S547392_KO1_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_005_S547395_16-2_Mutant.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_008_S547394_16-1_Mutant_rep.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347069), list(`_classname` = "resource", `_id` = 2347068), list(`_classname` = "resource", `_id` = 2347067), list(`_classname` = "resource", `_id` = 2347066), list(`_classname` = "resource", `_id` = 2347065), list(`_classname` = "resource", `_id` = 2347064)), modified = "2023-08-17 09:18:23", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347335, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:18:25", createdby = "tobiasko", deletable = "true", filechecksum = "b1adbf9c2c4341740f98f173bc10618c", junk = "false", modified = "2023-08-17 09:18:25", modifiedby = "tobiasko", name = "WU292636-20230817-0918-rawDiag.pdf", relativepath = "container_32568/workunit_292636/WU292636-20230817-0918-rawDiag.pdf", size = "196732", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292636/WU292636-20230817-0918-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292636/WU292636-20230817-0918-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292636))) The current plot is available as workunit 292636 #rows are 156805 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 156805 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc65df90f2a.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc65df90f2a.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292637, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:18:45", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_004_S547396_17-1_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_007_S547393_KO2_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_003_S547397_17-2_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_002_S547392_KO1_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_005_S547395_16-2_Mutant.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_008_S547394_16-1_Mutant_rep.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347069), list(`_classname` = "resource", `_id` = 2347068), list(`_classname` = "resource", `_id` = 2347067), list(`_classname` = "resource", `_id` = 2347066), list(`_classname` = "resource", `_id` = 2347065), list(`_classname` = "resource", `_id` = 2347064)), modified = "2023-08-17 09:18:45", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347336, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:18:46", createdby = "tobiasko", deletable = "true", filechecksum = "70a26558e71405b006c05c894d52da47", junk = "false", modified = "2023-08-17 09:18:46", modifiedby = "tobiasko", name = "WU292637-20230817-0918-rawDiag.pdf", relativepath = "container_32568/workunit_292637/WU292637-20230817-0918-rawDiag.pdf", size = "192563", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292637/WU292637-20230817-0918-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292637/WU292637-20230817-0918-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292637))) The current plot is available as workunit 292637 #rows are 156805 output$download 1... Warning: Removed 73 rows containing non-finite values (`stat_smooth()`). Warning: Removed 11 rows containing missing values (`geom_line()`). #rows are 156805 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc6611fa168.pdf Warning: Removed 73 rows containing non-finite values (`stat_smooth()`). Warning: Removed 11 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc6611fa168.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292638, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:18:56", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_004_S547396_17-1_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_007_S547393_KO2_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_003_S547397_17-2_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_002_S547392_KO1_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_005_S547395_16-2_Mutant.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_008_S547394_16-1_Mutant_rep.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347069), list(`_classname` = "resource", `_id` = 2347068), list(`_classname` = "resource", `_id` = 2347067), list(`_classname` = "resource", `_id` = 2347066), list(`_classname` = "resource", `_id` = 2347065), list(`_classname` = "resource", `_id` = 2347064)), modified = "2023-08-17 09:18:56", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347337, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:18:58", createdby = "tobiasko", deletable = "true", filechecksum = "d2c58a9869c84ca33b1c351a53e6260f", junk = "false", modified = "2023-08-17 09:18:58", modifiedby = "tobiasko", name = "WU292638-20230817-0918-rawDiag.pdf", relativepath = "container_32568/workunit_292638/WU292638-20230817-0918-rawDiag.pdf", size = "123577", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292638/WU292638-20230817-0918-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292638/WU292638-20230817-0918-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292638))) The current plot is available as workunit 292638 #rows are 156805 output$download 1... #rows are 156805 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc672256afa.pdf generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc672256afa.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292639, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:19:17", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_004_S547396_17-1_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_007_S547393_KO2_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_003_S547397_17-2_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_002_S547392_KO1_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_005_S547395_16-2_Mutant.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_008_S547394_16-1_Mutant_rep.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347069), list(`_classname` = "resource", `_id` = 2347068), list(`_classname` = "resource", `_id` = 2347067), list(`_classname` = "resource", `_id` = 2347066), list(`_classname` = "resource", `_id` = 2347065), list(`_classname` = "resource", `_id` = 2347064)), modified = "2023-08-17 09:19:17", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347338, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:19:18", createdby = "tobiasko", deletable = "true", filechecksum = "d3e14148e7f32374e2131ebb45d32dcc", junk = "false", modified = "2023-08-17 09:19:18", modifiedby = "tobiasko", name = "WU292639-20230817-0919-rawDiag.pdf", relativepath = "container_32568/workunit_292639/WU292639-20230817-0919-rawDiag.pdf", size = "655744", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292639/WU292639-20230817-0919-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292639/WU292639-20230817-0919-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292639))) The current plot is available as workunit 292639 #rows are 156805 output$download 1... #rows are 156805 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc61381db45.pdf generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc61381db45.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292640, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:19:29", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_004_S547396_17-1_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_007_S547393_KO2_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_003_S547397_17-2_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_002_S547392_KO1_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_005_S547395_16-2_Mutant.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_008_S547394_16-1_Mutant_rep.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347069), list(`_classname` = "resource", `_id` = 2347068), list(`_classname` = "resource", `_id` = 2347067), list(`_classname` = "resource", `_id` = 2347066), list(`_classname` = "resource", `_id` = 2347065), list(`_classname` = "resource", `_id` = 2347064)), modified = "2023-08-17 09:19:29", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347339, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:19:30", createdby = "tobiasko", deletable = "true", filechecksum = "1c47cd98d7ae615d22e12926c266da7d", junk = "false", modified = "2023-08-17 09:19:31", modifiedby = "tobiasko", name = "WU292640-20230817-0919-rawDiag.pdf", relativepath = "container_32568/workunit_292640/WU292640-20230817-0919-rawDiag.pdf", size = "8897", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292640/WU292640-20230817-0919-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292640/WU292640-20230817-0919-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292640))) The current plot is available as workunit 292640 #rows are 156805 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 156805 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc64bdcf95.pdf generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc64bdcf95.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292641, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:19:41", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_004_S547396_17-1_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_007_S547393_KO2_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_003_S547397_17-2_WT.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_002_S547392_KO1_Control.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_005_S547395_16-2_Mutant.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DDA/20230815_C32568_008_S547394_16-1_Mutant_rep.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347069), list(`_classname` = "resource", `_id` = 2347068), list(`_classname` = "resource", `_id` = 2347067), list(`_classname` = "resource", `_id` = 2347066), list(`_classname` = "resource", `_id` = 2347065), list(`_classname` = "resource", `_id` = 2347064)), modified = "2023-08-17 09:19:41", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347340, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:19:42", createdby = "tobiasko", deletable = "true", filechecksum = "66101b248e0abb6394a9b71db1b923d3", junk = "false", modified = "2023-08-17 09:19:42", modifiedby = "tobiasko", name = "WU292641-20230817-0919-rawDiag.pdf", relativepath = "container_32568/workunit_292641/WU292641-20230817-0919-rawDiag.pdf", size = "33776", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292641/WU292641-20230817-0919-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292641/WU292641-20230817-0919-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292641))) The current plot is available as workunit 292641 #rows are 156805 output$download 1... Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#841] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$xic 1: runApp #rows are 156805 output$download 2... Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#841] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$xic 1: runApp executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_003_S547397_17-2_WT_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_005_S547395_16-2_Mutant_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_002_S547392_KO1_Control_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_004_S547396_17-1_WT_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_008_S547394_16-1_Mutant_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_007_S547393_KO2_Control_DIA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 522397 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 522397 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc63291f6f6.pdf generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc63291f6f6.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292645, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:26:16", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_005_S547395_16-2_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_003_S547397_17-2_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_002_S547392_KO1_Control_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_004_S547396_17-1_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_008_S547394_16-1_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_007_S547393_KO2_Control_DIA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347121), list(`_classname` = "resource", `_id` = 2347120), list(`_classname` = "resource", `_id` = 2347119), list(`_classname` = "resource", `_id` = 2347118), list(`_classname` = "resource", `_id` = 2347117), list(`_classname` = "resource", `_id` = 2347116)), modified = "2023-08-17 09:26:16", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347346, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:26:18", createdby = "tobiasko", deletable = "true", filechecksum = "a2af4904fdd363437f49651f4a0328e8", junk = "false", modified = "2023-08-17 09:26:18", modifiedby = "tobiasko", name = "WU292645-20230817-0926-rawDiag.pdf", relativepath = "container_32568/workunit_292645/WU292645-20230817-0926-rawDiag.pdf", size = "89646", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292645/WU292645-20230817-0926-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292645/WU292645-20230817-0926-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292645))) The current plot is available as workunit 292645 #rows are 522397 output$download 1... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 522397 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc645ded541.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc645ded541.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292646, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:26:41", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_005_S547395_16-2_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_003_S547397_17-2_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_002_S547392_KO1_Control_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_004_S547396_17-1_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_008_S547394_16-1_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_007_S547393_KO2_Control_DIA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347121), list(`_classname` = "resource", `_id` = 2347120), list(`_classname` = "resource", `_id` = 2347119), list(`_classname` = "resource", `_id` = 2347118), list(`_classname` = "resource", `_id` = 2347117), list(`_classname` = "resource", `_id` = 2347116)), modified = "2023-08-17 09:26:41", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347347, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:26:42", createdby = "tobiasko", deletable = "true", filechecksum = "35d1ff84730d7d835b03acd2fc6c32f9", junk = "false", modified = "2023-08-17 09:26:42", modifiedby = "tobiasko", name = "WU292646-20230817-0926-rawDiag.pdf", relativepath = "container_32568/workunit_292646/WU292646-20230817-0926-rawDiag.pdf", size = "160223", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292646/WU292646-20230817-0926-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292646/WU292646-20230817-0926-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292646))) The current plot is available as workunit 292646 #rows are 522397 output$download 1... #rows are 522397 output$download 2... Warning: Removed 54 rows containing non-finite values (`stat_smooth()`). Warning: Removed 10 rows containing missing values (`geom_line()`). #rows are 522397 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc62f258cf5.pdf Warning: Removed 54 rows containing non-finite values (`stat_smooth()`). Warning: Removed 10 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc62f258cf5.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292647, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:28:22", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_005_S547395_16-2_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_003_S547397_17-2_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_002_S547392_KO1_Control_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_004_S547396_17-1_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_008_S547394_16-1_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_007_S547393_KO2_Control_DIA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347121), list(`_classname` = "resource", `_id` = 2347120), list(`_classname` = "resource", `_id` = 2347119), list(`_classname` = "resource", `_id` = 2347118), list(`_classname` = "resource", `_id` = 2347117), list(`_classname` = "resource", `_id` = 2347116)), modified = "2023-08-17 09:28:22", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347348, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:28:23", createdby = "tobiasko", deletable = "true", filechecksum = "cb49b5cd4f31436122cfc1575f36e1a5", junk = "false", modified = "2023-08-17 09:28:23", modifiedby = "tobiasko", name = "WU292647-20230817-0928-rawDiag.pdf", relativepath = "container_32568/workunit_292647/WU292647-20230817-0928-rawDiag.pdf", size = "50390", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292647/WU292647-20230817-0928-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292647/WU292647-20230817-0928-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292647))) The current plot is available as workunit 292647 #rows are 522397 output$download 1... #rows are 522397 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc616a3bb7b.pdf generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc616a3bb7b.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292648, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:29:06", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_005_S547395_16-2_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_003_S547397_17-2_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_002_S547392_KO1_Control_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_004_S547396_17-1_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_008_S547394_16-1_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_007_S547393_KO2_Control_DIA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347121), list(`_classname` = "resource", `_id` = 2347120), list(`_classname` = "resource", `_id` = 2347119), list(`_classname` = "resource", `_id` = 2347118), list(`_classname` = "resource", `_id` = 2347117), list(`_classname` = "resource", `_id` = 2347116)), modified = "2023-08-17 09:29:06", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347349, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:29:08", createdby = "tobiasko", deletable = "true", filechecksum = "44ee8c7ff9639cf244d31e18dd6aefca", junk = "false", modified = "2023-08-17 09:29:08", modifiedby = "tobiasko", name = "WU292648-20230817-0929-rawDiag.pdf", relativepath = "container_32568/workunit_292648/WU292648-20230817-0929-rawDiag.pdf", size = "936830", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292648/WU292648-20230817-0929-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292648/WU292648-20230817-0929-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292648))) The current plot is available as workunit 292648 #rows are 522397 output$download 1... Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 522397 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc659ca76ea.pdf generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc659ca76ea.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292649, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:29:34", createdby = "tobiasko", deletable = "true", description = "input files:\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_005_S547395_16-2_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_003_S547397_17-2_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_002_S547392_KO1_Control_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_004_S547396_17-1_WT_DIA.raw \np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_008_S547394_16-1_Mutant_DIA.raw\np32568/Proteomics/EXPLORIS_2/analytic_20230815_DIA/20230815_C32568_007_S547393_KO2_Control_DIA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2347121), list(`_classname` = "resource", `_id` = 2347120), list(`_classname` = "resource", `_id` = 2347119), list(`_classname` = "resource", `_id` = 2347118), list(`_classname` = "resource", `_id` = 2347117), list(`_classname` = "resource", `_id` = 2347116)), modified = "2023-08-17 09:29:34", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347350, container = list(`_classname` = "order", `_id` = 32568), created = "2023-08-17 09:29:35", createdby = "tobiasko", deletable = "true", filechecksum = "7372ea714e998920f73b2fd239348608", junk = "false", modified = "2023-08-17 09:29:35", modifiedby = "tobiasko", name = "WU292649-20230817-0929-rawDiag.pdf", relativepath = "container_32568/workunit_292649/WU292649-20230817-0929-rawDiag.pdf", size = "30748", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32568/workunit_292649/WU292649-20230817-0929-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32568/workunit_292649/WU292649-20230817-0929-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292649))) The current plot is available as workunit 292649 #rows are 522397 output$download 1... DEBUG renderPlot plotQCs #rows are 522397 output$download 1... #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_027_S540794_15_CD163KO_25uM-HbHp1-1_72_A.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_043_S540804_25_WT_25uM-HbHp1-1_72_B.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_014_S540782_3_CD163KO_ctrl_0_A.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_052_S540824_45_WT_25uM-HbHp1-1_72_D.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_038_S540826_47_WT_25uM-HbHp1-1_96_D.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_058_S540805_26_CD163KO_25uM-HbHp1-1_72_B.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_041_S540800_21_WT_25uM-HbHp1-1_24_B.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_018_S540798_19_WT_ctrl_0_B.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_062_S540825_46_CD163KO_25uM-HbHp1-1_72_D.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_013_S540813_34_CD163KO_25uM-HbHp1-1_72_C.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_020_S540784_5_WT_25uM-HbHp1-1_24_A.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_053_S540803_24_CD163KO_25uM-HbHp1-1_48_B.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_002a_S540820_41_WT_25uM-HbHp1-1_24_D.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_030_S540786_7_CD163KO_25uM-HbHp1-1_24_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_040_S540787_8_WT_25uM-HbHp1-1_48_A.raw qc ... renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_035_S540810_31_WT_25uM-HbHp1-1_48_C.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_063_S540823_44_CD163KO_25uM-HbHp1-1_48_D.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_026_S540816_37_WT_ctrl_0_D.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_010_S540802_23_WT_25uM-HbHp1-1_48_B.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_009_S540817_38_CD163KO_ctrl_0_D.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_060_S540815_36_CD163KO_25uM-HbHp1-1_96_C.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_024_S540788_9_WT_25uM-HbHp1-1_48_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_047_S540799_20_CD163KO_ctrl_0_B.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_048a_S540819_40_CD163KO_ctrl_0_E.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_019_S540808_29_WT_25uM-HbHp1-1_24_C.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_032_S540785_6_CD163KO_25uM-HbHp1-1_24_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_031_S540783_4_WT_25uM-HbHp1-1_24_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_065a_S540809_30_CD163KO_ctrl_0_C.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_005_S540801_22_CD163KO_25uM-HbHp1-1_24_B.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_042_S540793_14_CD163KO_25uM-HbHp1-1_72_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_036_S540795_16_WT_25uM-HbHp1-1_96_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_051_S540818_39_WT_ctrl_0_E.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_021_S540791_12_WT_25uM-HbHp1-1_72_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_015_S540780_1_WT_25uM-HbHp1-1_0_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_003_S540827_48_CD163KO_25uM-HbHp1-1_96_D.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_057_S540811_32_CD163KO_25uM-HbHp1-1_48_C.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_007_S540806_27_WT_25uM-HbHp1-1_96_B.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_049_S540814_35_WT_25uM-HbHp1-1_96_C.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_004_S540822_43_WT_25uM-HbHp1-1_48_D.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_054_S540812_33_WT_25uM-HbHp1-1_72_C.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_037_S540807_28_CD163KO_25uM-HbHp1-1_96_B.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_025_S540797_18_CD163KO_25uM-HbHp1-1_96_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_059_S540789_10_CD163KO_25uM-HbHp1-1_48_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_064_S540790_11_CD163KO_25uM-HbHp1-1_48_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_046_S540796_17_CD163KO_25uM-HbHp1-1_96_A.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_029_S540792_13_WT_25uM-HbHp1-1_72_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_008_S540821_42_CD163KO_25uM-HbHp1-1_24_D.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_016_S540781_2_CD163KO_ctrl_0_A.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values #rows are 3817655 output$tic.basepeak <- renderPlot({ #rows are 3817655 output$download 2... saving 'login and webservicepassword' ... output$tic.basepeak <- renderPlot({ #rows are 3817655 output$download 2... ggsave to file /tmp/Rtmp8oQNhM/rawDiag-2cbc616e3632f.pdf generated pdf /tmp/Rtmp8oQNhM/rawDiag-2cbc616e3632f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 292671, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32416), created = "2023-08-17 15:42:39", createdby = "paolo", deletable = "true", description = 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\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_019_S540808_29_WT_25uM-HbHp1-1_24_C.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_021_S540791_12_WT_25uM-HbHp1-1_72_A.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_003_S540827_48_CD163KO_25uM-HbHp1-1_96_D.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_042_S540793_14_CD163KO_25uM-HbHp1-1_72_A.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_036_S540795_16_WT_25uM-HbHp1-1_96_A.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_065a_S540809_30_CD163KO_ctrl_0_C.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_005_S540801_22_CD163KO_25uM-HbHp1-1_24_B.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_032_S540785_6_CD163KO_25uM-HbHp1-1_24_A.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_015_S540780_1_WT_25uM-HbHp1-1_0_A.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_016_S540781_2_CD163KO_ctrl_0_A.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_004_S540822_43_WT_25uM-HbHp1-1_48_D.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_029_S540792_13_WT_25uM-HbHp1-1_72_A.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_007_S540806_27_WT_25uM-HbHp1-1_96_B.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_064_S540790_11_CD163KO_25uM-HbHp1-1_48_A.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_046_S540796_17_CD163KO_25uM-HbHp1-1_96_A.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_025_S540797_18_CD163KO_25uM-HbHp1-1_96_A.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_059_S540789_10_CD163KO_25uM-HbHp1-1_48_A.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_054_S540812_33_WT_25uM-HbHp1-1_72_C.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_037_S540807_28_CD163KO_25uM-HbHp1-1_96_B.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_049_S540814_35_WT_25uM-HbHp1-1_96_C.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_008_S540821_42_CD163KO_25uM-HbHp1-1_24_D.raw\np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_047_S540799_20_CD163KO_ctrl_0_B.raw \np32416/Proteomics/LUMOS_2/analytic_20230803/20230803_C32416_040_S540787_8_WT_25uM-HbHp1-1_48_A.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2344329), list(`_classname` = "resource", `_id` = 2344328), list(`_classname` = "resource", `_id` = 2344326), list(`_classname` = "resource", `_id` = 2344323), list(`_classname` = "resource", `_id` = 2344316)), modified = "2023-08-17 15:42:39", modifiedby = "paolo", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2347559, container = list(`_classname` = "order", `_id` = 32416), created = "2023-08-17 15:42:41", createdby = "paolo", deletable = "true", filechecksum = "ec734ba6bfee67dca08f27a5534cdae6", junk = "false", modified = "2023-08-17 15:42:41", modifiedby = "paolo", name = "WU292671-20230817-1542-rawDiag.pdf", relativepath = "container_32416/workunit_292671/WU292671-20230817-1542-rawDiag.pdf", size = "1141107", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32416/workunit_292671/WU292671-20230817-1542-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32416/workunit_292671/WU292671-20230817-1542-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 292671))) The current plot is available as workunit 292671 #rows are 3817655 output$download 1... saving 'login and webservicepassword' ... DEBUG renderPlot plotQCs #rows are 522397 output$download 1... Execution halted