Listening on http://127.0.0.1:38221 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_019_S550078_GFP-Avi_3_Group_5_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_024_S550068_CCTFAM-VRK1_2_Group_2_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550079_TFAMoplex_Cytosol_Group_6_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_012_S550066_CCTFAM_3_Group_1_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_022_S550069_CCTFAM-VRK1_3_Group_2_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_013_S550065_CCTFAM_2_Group_1_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_003_S550074_plasmidonly_2_Group_4_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_004_S550077_GFP-Avi_2_Group_5_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S556424_TFAMoplex_Rp3_Group_7_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_023_S550072_CCTFAM-deadVRK1_3_Group_3_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_007_S550073_plasmidonly_1_Group_4_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S550067_CCTFAM-VRK1_1_Group_2_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_008_S550070_CCTFAM-deadVRK1_1_Group_3_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_009_S550075_plasmidonly_3_Group_4_DDA.raw qc ... renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550076_GFP-Avi_1_Group_5_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_014_S550064_CCTFAM_1_Group_1_DDA.raw qc ... renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_018_S550071_CCTFAM-deadVRK1_2_Group_3_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 488888 output$tic.basepeak <- renderPlot({ #rows are 488888 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpCjzI1T/rawDiag-eac5b70b4c7e4.pdf generated pdf /tmp/RtmpCjzI1T/rawDiag-eac5b70b4c7e4.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293088, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 08:57:00", createdby = "tobiasko", deletable = "true", description = "input files:\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_024_S550068_CCTFAM-VRK1_2_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_012_S550066_CCTFAM_3_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_022_S550069_CCTFAM-VRK1_3_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550079_TFAMoplex_Cytosol_Group_6_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_019_S550078_GFP-Avi_3_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_013_S550065_CCTFAM_2_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_003_S550074_plasmidonly_2_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_004_S550077_GFP-Avi_2_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S556424_TFAMoplex_Rp3_Group_7_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_023_S550072_CCTFAM-deadVRK1_3_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_007_S550073_plasmidonly_1_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S550067_CCTFAM-VRK1_1_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_018_S550071_CCTFAM-deadVRK1_2_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_009_S550075_plasmidonly_3_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_014_S550064_CCTFAM_1_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550076_GFP-Avi_1_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_008_S550070_CCTFAM-deadVRK1_1_Group_3_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2352460), list(`_classname` = "resource", `_id` = 2352459), list(`_classname` = "resource", `_id` = 2352458), list(`_classname` = "resource", `_id` = 2352457), list(`_classname` = "resource", `_id` = 2352456), list(`_classname` = "resource", `_id` = 2352455), list(`_classname` = "resource", `_id` = 2352454), list(`_classname` = "resource", `_id` = 2352453), list(`_classname` = "resource", `_id` = 2352452), list( `_classname` = "resource", `_id` = 2352451), list(`_classname` = "resource", `_id` = 2352450), list(`_classname` = "resource", `_id` = 2352449), list(`_classname` = "resource", `_id` = 2352448), list(`_classname` = "resource", `_id` = 2352447), list(`_classname` = "resource", `_id` = 2352446), list(`_classname` = "resource", `_id` = 2352445), list(`_classname` = "resource", `_id` = 2352444)), modified = "2023-09-04 08:57:00", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2352776, container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 08:57:01", createdby = "tobiasko", deletable = "true", filechecksum = "fd568b5b9642a1dc59234a497893567e", junk = "false", modified = "2023-09-04 08:57:01", modifiedby = "tobiasko", name = "WU293088-20230904-0857-rawDiag.pdf", relativepath = "container_32624/workunit_293088/WU293088-20230904-0857-rawDiag.pdf", size = "424966", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32624/workunit_293088/WU293088-20230904-0857-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32624/workunit_293088/WU293088-20230904-0857-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293088))) The current plot is available as workunit 293088 #rows are 488888 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 488888 output$download 2... ggsave to file /tmp/RtmpCjzI1T/rawDiag-eac5b32fdd94a.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpCjzI1T/rawDiag-eac5b32fdd94a.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293089, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 08:57:51", createdby = "tobiasko", deletable = "true", description = "input files:\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_024_S550068_CCTFAM-VRK1_2_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_012_S550066_CCTFAM_3_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_022_S550069_CCTFAM-VRK1_3_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550079_TFAMoplex_Cytosol_Group_6_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_019_S550078_GFP-Avi_3_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_013_S550065_CCTFAM_2_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_003_S550074_plasmidonly_2_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_004_S550077_GFP-Avi_2_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S556424_TFAMoplex_Rp3_Group_7_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_023_S550072_CCTFAM-deadVRK1_3_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_007_S550073_plasmidonly_1_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S550067_CCTFAM-VRK1_1_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_018_S550071_CCTFAM-deadVRK1_2_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_009_S550075_plasmidonly_3_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_014_S550064_CCTFAM_1_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550076_GFP-Avi_1_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_008_S550070_CCTFAM-deadVRK1_1_Group_3_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2352460), list(`_classname` = "resource", `_id` = 2352459), list(`_classname` = "resource", `_id` = 2352458), list(`_classname` = "resource", `_id` = 2352457), list(`_classname` = "resource", `_id` = 2352456), list(`_classname` = "resource", `_id` = 2352455), list(`_classname` = "resource", `_id` = 2352454), list(`_classname` = "resource", `_id` = 2352453), list(`_classname` = "resource", `_id` = 2352452), list( `_classname` = "resource", `_id` = 2352451), list(`_classname` = "resource", `_id` = 2352450), list(`_classname` = "resource", `_id` = 2352449), list(`_classname` = "resource", `_id` = 2352448), list(`_classname` = "resource", `_id` = 2352447), list(`_classname` = "resource", `_id` = 2352446), list(`_classname` = "resource", `_id` = 2352445), list(`_classname` = "resource", `_id` = 2352444)), modified = "2023-09-04 08:57:51", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2352777, container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 08:57:53", createdby = "tobiasko", deletable = "true", filechecksum = "b1014d0885b7cae718531c73ebf0fd57", junk = "false", modified = "2023-09-04 08:57:53", modifiedby = "tobiasko", name = "WU293089-20230904-0857-rawDiag.pdf", relativepath = "container_32624/workunit_293089/WU293089-20230904-0857-rawDiag.pdf", size = "525982", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32624/workunit_293089/WU293089-20230904-0857-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32624/workunit_293089/WU293089-20230904-0857-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293089))) The current plot is available as workunit 293089 #rows are 488888 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 488888 output$download 2... ggsave to file /tmp/RtmpCjzI1T/rawDiag-eac5b56aed4e1.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpCjzI1T/rawDiag-eac5b56aed4e1.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293090, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:00:03", createdby = "tobiasko", deletable = "true", description = "input files:\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_024_S550068_CCTFAM-VRK1_2_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_012_S550066_CCTFAM_3_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_022_S550069_CCTFAM-VRK1_3_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550079_TFAMoplex_Cytosol_Group_6_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_019_S550078_GFP-Avi_3_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_013_S550065_CCTFAM_2_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_003_S550074_plasmidonly_2_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_004_S550077_GFP-Avi_2_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S556424_TFAMoplex_Rp3_Group_7_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_023_S550072_CCTFAM-deadVRK1_3_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_007_S550073_plasmidonly_1_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S550067_CCTFAM-VRK1_1_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_018_S550071_CCTFAM-deadVRK1_2_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_009_S550075_plasmidonly_3_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_014_S550064_CCTFAM_1_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550076_GFP-Avi_1_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_008_S550070_CCTFAM-deadVRK1_1_Group_3_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2352460), list(`_classname` = "resource", `_id` = 2352459), list(`_classname` = "resource", `_id` = 2352458), list(`_classname` = "resource", `_id` = 2352457), list(`_classname` = "resource", `_id` = 2352456), list(`_classname` = "resource", `_id` = 2352455), list(`_classname` = "resource", `_id` = 2352454), list(`_classname` = "resource", `_id` = 2352453), list(`_classname` = "resource", `_id` = 2352452), list( `_classname` = "resource", `_id` = 2352451), list(`_classname` = "resource", `_id` = 2352450), list(`_classname` = "resource", `_id` = 2352449), list(`_classname` = "resource", `_id` = 2352448), list(`_classname` = "resource", `_id` = 2352447), list(`_classname` = "resource", `_id` = 2352446), list(`_classname` = "resource", `_id` = 2352445), list(`_classname` = "resource", `_id` = 2352444)), modified = "2023-09-04 09:00:03", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2352778, container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:00:05", createdby = "tobiasko", deletable = "true", filechecksum = "8338f280b7a248866bb6c87cd7f5c40d", junk = "false", modified = "2023-09-04 09:00:05", modifiedby = "tobiasko", name = "WU293090-20230904-0900-rawDiag.pdf", relativepath = "container_32624/workunit_293090/WU293090-20230904-0900-rawDiag.pdf", size = "2240931", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32624/workunit_293090/WU293090-20230904-0900-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32624/workunit_293090/WU293090-20230904-0900-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293090))) The current plot is available as workunit 293090 #rows are 488888 output$download 1... Warning: Removed 2 rows containing non-finite values (`stat_smooth()`). #rows are 488888 output$download 2... ggsave to file /tmp/RtmpCjzI1T/rawDiag-eac5b5a0993a5.pdf Warning: Removed 2 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpCjzI1T/rawDiag-eac5b5a0993a5.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293091, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:00:31", createdby = "tobiasko", deletable = "true", description = "input files:\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_024_S550068_CCTFAM-VRK1_2_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_012_S550066_CCTFAM_3_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_022_S550069_CCTFAM-VRK1_3_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550079_TFAMoplex_Cytosol_Group_6_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_019_S550078_GFP-Avi_3_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_013_S550065_CCTFAM_2_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_003_S550074_plasmidonly_2_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_004_S550077_GFP-Avi_2_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S556424_TFAMoplex_Rp3_Group_7_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_023_S550072_CCTFAM-deadVRK1_3_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_007_S550073_plasmidonly_1_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S550067_CCTFAM-VRK1_1_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_018_S550071_CCTFAM-deadVRK1_2_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_009_S550075_plasmidonly_3_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_014_S550064_CCTFAM_1_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550076_GFP-Avi_1_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_008_S550070_CCTFAM-deadVRK1_1_Group_3_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2352460), list(`_classname` = "resource", `_id` = 2352459), list(`_classname` = "resource", `_id` = 2352458), list(`_classname` = "resource", `_id` = 2352457), list(`_classname` = "resource", `_id` = 2352456), list(`_classname` = "resource", `_id` = 2352455), list(`_classname` = "resource", `_id` = 2352454), list(`_classname` = "resource", `_id` = 2352453), list(`_classname` = "resource", `_id` = 2352452), list( `_classname` = "resource", `_id` = 2352451), list(`_classname` = "resource", `_id` = 2352450), list(`_classname` = "resource", `_id` = 2352449), list(`_classname` = "resource", `_id` = 2352448), list(`_classname` = "resource", `_id` = 2352447), list(`_classname` = "resource", `_id` = 2352446), list(`_classname` = "resource", `_id` = 2352445), list(`_classname` = "resource", `_id` = 2352444)), modified = "2023-09-04 09:00:31", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2352779, container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:00:33", createdby = "tobiasko", deletable = "true", filechecksum = "c4cc76c703e1ba01a8c90a82d5b2a8d8", junk = "false", modified = "2023-09-04 09:00:33", modifiedby = "tobiasko", name = "WU293091-20230904-0900-rawDiag.pdf", relativepath = "container_32624/workunit_293091/WU293091-20230904-0900-rawDiag.pdf", size = "240645", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32624/workunit_293091/WU293091-20230904-0900-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32624/workunit_293091/WU293091-20230904-0900-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293091))) The current plot is available as workunit 293091 #rows are 488888 output$download 1... #rows are 488888 output$download 2... ggsave to file /tmp/RtmpCjzI1T/rawDiag-eac5b6af8492c.pdf generated pdf /tmp/RtmpCjzI1T/rawDiag-eac5b6af8492c.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293092, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:20:59", createdby = "tobiasko", deletable = "true", description = "input files:\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_024_S550068_CCTFAM-VRK1_2_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_012_S550066_CCTFAM_3_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_022_S550069_CCTFAM-VRK1_3_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550079_TFAMoplex_Cytosol_Group_6_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_019_S550078_GFP-Avi_3_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_013_S550065_CCTFAM_2_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_003_S550074_plasmidonly_2_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_004_S550077_GFP-Avi_2_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S556424_TFAMoplex_Rp3_Group_7_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_023_S550072_CCTFAM-deadVRK1_3_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_007_S550073_plasmidonly_1_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S550067_CCTFAM-VRK1_1_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_018_S550071_CCTFAM-deadVRK1_2_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_009_S550075_plasmidonly_3_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_014_S550064_CCTFAM_1_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550076_GFP-Avi_1_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_008_S550070_CCTFAM-deadVRK1_1_Group_3_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2352460), list(`_classname` = "resource", `_id` = 2352459), list(`_classname` = "resource", `_id` = 2352458), list(`_classname` = "resource", `_id` = 2352457), list(`_classname` = "resource", `_id` = 2352456), list(`_classname` = "resource", `_id` = 2352455), list(`_classname` = "resource", `_id` = 2352454), list(`_classname` = "resource", `_id` = 2352453), list(`_classname` = "resource", `_id` = 2352452), list( `_classname` = "resource", `_id` = 2352451), list(`_classname` = "resource", `_id` = 2352450), list(`_classname` = "resource", `_id` = 2352449), list(`_classname` = "resource", `_id` = 2352448), list(`_classname` = "resource", `_id` = 2352447), list(`_classname` = "resource", `_id` = 2352446), list(`_classname` = "resource", `_id` = 2352445), list(`_classname` = "resource", `_id` = 2352444)), modified = "2023-09-04 09:20:59", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2352780, container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:21:01", createdby = "tobiasko", deletable = "true", filechecksum = "8f5a8237b131a67a3a36c4cb73d446d4", junk = "false", modified = "2023-09-04 09:21:01", modifiedby = "tobiasko", name = "WU293092-20230904-0920-rawDiag.pdf", relativepath = "container_32624/workunit_293092/WU293092-20230904-0920-rawDiag.pdf", size = "2095100", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32624/workunit_293092/WU293092-20230904-0920-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32624/workunit_293092/WU293092-20230904-0920-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293092))) The current plot is available as workunit 293092 #rows are 488888 output$download 1... #rows are 488888 output$download 2... ggsave to file /tmp/RtmpCjzI1T/rawDiag-eac5b839ded4.pdf generated pdf /tmp/RtmpCjzI1T/rawDiag-eac5b839ded4.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293093, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:21:28", createdby = "tobiasko", deletable = "true", description = "input files:\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_024_S550068_CCTFAM-VRK1_2_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_012_S550066_CCTFAM_3_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_022_S550069_CCTFAM-VRK1_3_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550079_TFAMoplex_Cytosol_Group_6_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_019_S550078_GFP-Avi_3_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_013_S550065_CCTFAM_2_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_003_S550074_plasmidonly_2_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_004_S550077_GFP-Avi_2_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S556424_TFAMoplex_Rp3_Group_7_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_023_S550072_CCTFAM-deadVRK1_3_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_007_S550073_plasmidonly_1_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S550067_CCTFAM-VRK1_1_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_018_S550071_CCTFAM-deadVRK1_2_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_009_S550075_plasmidonly_3_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_014_S550064_CCTFAM_1_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550076_GFP-Avi_1_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_008_S550070_CCTFAM-deadVRK1_1_Group_3_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2352460), list(`_classname` = "resource", `_id` = 2352459), list(`_classname` = "resource", `_id` = 2352458), list(`_classname` = "resource", `_id` = 2352457), list(`_classname` = "resource", `_id` = 2352456), list(`_classname` = "resource", `_id` = 2352455), list(`_classname` = "resource", `_id` = 2352454), list(`_classname` = "resource", `_id` = 2352453), list(`_classname` = "resource", `_id` = 2352452), list( `_classname` = "resource", `_id` = 2352451), list(`_classname` = "resource", `_id` = 2352450), list(`_classname` = "resource", `_id` = 2352449), list(`_classname` = "resource", `_id` = 2352448), list(`_classname` = "resource", `_id` = 2352447), list(`_classname` = "resource", `_id` = 2352446), list(`_classname` = "resource", `_id` = 2352445), list(`_classname` = "resource", `_id` = 2352444)), modified = "2023-09-04 09:21:28", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2352781, container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:21:30", createdby = "tobiasko", deletable = "true", filechecksum = "237556c552e2bf9c1ebb54ec889cc011", junk = "false", modified = "2023-09-04 09:21:30", modifiedby = "tobiasko", name = "WU293093-20230904-0921-rawDiag.pdf", relativepath = "container_32624/workunit_293093/WU293093-20230904-0921-rawDiag.pdf", size = "14687", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32624/workunit_293093/WU293093-20230904-0921-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32624/workunit_293093/WU293093-20230904-0921-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293093))) The current plot is available as workunit 293093 #rows are 488888 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 488888 output$download 2... ggsave to file /tmp/RtmpCjzI1T/rawDiag-eac5b193025dd.pdf generated pdf /tmp/RtmpCjzI1T/rawDiag-eac5b193025dd.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293094, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:22:15", createdby = "tobiasko", deletable = "true", description = "input files:\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_024_S550068_CCTFAM-VRK1_2_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_012_S550066_CCTFAM_3_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_022_S550069_CCTFAM-VRK1_3_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550079_TFAMoplex_Cytosol_Group_6_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_019_S550078_GFP-Avi_3_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_013_S550065_CCTFAM_2_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_003_S550074_plasmidonly_2_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_004_S550077_GFP-Avi_2_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S556424_TFAMoplex_Rp3_Group_7_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_023_S550072_CCTFAM-deadVRK1_3_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_007_S550073_plasmidonly_1_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_017_S550067_CCTFAM-VRK1_1_Group_2_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_018_S550071_CCTFAM-deadVRK1_2_Group_3_DDA.raw\np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_009_S550075_plasmidonly_3_Group_4_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_014_S550064_CCTFAM_1_Group_1_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_002_S550076_GFP-Avi_1_Group_5_DDA.raw \np32624/Proteomics/EXPLORIS_2/analytic_20230831/20230831_C32624_008_S550070_CCTFAM-deadVRK1_1_Group_3_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2352460), list(`_classname` = "resource", `_id` = 2352459), list(`_classname` = "resource", `_id` = 2352458), list(`_classname` = "resource", `_id` = 2352457), list(`_classname` = "resource", `_id` = 2352456), list(`_classname` = "resource", `_id` = 2352455), list(`_classname` = "resource", `_id` = 2352454), list(`_classname` = "resource", `_id` = 2352453), list(`_classname` = "resource", `_id` = 2352452), list( `_classname` = "resource", `_id` = 2352451), list(`_classname` = "resource", `_id` = 2352450), list(`_classname` = "resource", `_id` = 2352449), list(`_classname` = "resource", `_id` = 2352448), list(`_classname` = "resource", `_id` = 2352447), list(`_classname` = "resource", `_id` = 2352446), list(`_classname` = "resource", `_id` = 2352445), list(`_classname` = "resource", `_id` = 2352444)), modified = "2023-09-04 09:22:15", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2352782, container = list(`_classname` = "order", `_id` = 32624), created = "2023-09-04 09:22:17", createdby = "tobiasko", deletable = "true", filechecksum = "b2119f3eaaf15a753d5e1d3b8b3cab9e", junk = "false", modified = "2023-09-04 09:22:17", modifiedby = "tobiasko", name = "WU293094-20230904-0922-rawDiag.pdf", relativepath = "container_32624/workunit_293094/WU293094-20230904-0922-rawDiag.pdf", size = "98367", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32624/workunit_293094/WU293094-20230904-0922-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32624/workunit_293094/WU293094-20230904-0922-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293094))) The current plot is available as workunit 293094 #rows are 488888 output$download 1... Execution halted