Listening on http://127.0.0.1:40855 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_021_S553626_SPEXP4-23-WT-2_23-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_005_S553612_SPEXP4-DMSO-KO-2_DMSO-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_003_S553610_SPEXP4-DMSO-WT-2_DMSO-WT_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_004_S553611_SPEXP4-DMSO-KO-1_DMSO-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_009_S553615_SPEXP4-19-KO-1_19-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_005_S553612_SPEXP4-DMSO-KO-2_DMSO-KO_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_002_S553609_SPEXP4-DMSO-WT-1_DMSO-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_007_S553614_SPEXP4-19-WT-2_19-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_002_S553609_SPEXP4-DMSO-WT-1_DMSO-WT_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_020_S553625_SPEXP4-23-WT-1_23-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_010_S553616_SPEXP4-19-KO-2_19-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_006_S553613_SPEXP4-19-WT-1_19-WT.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_004_S553611_SPEXP4-DMSO-KO-1_DMSO-KO_rep.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_003_S553610_SPEXP4-DMSO-WT-2_DMSO-WT.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 232803 output$tic.basepeak <- renderPlot({ #rows are 232803 output$download 2... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. output$tic.basepeak <- renderPlot({ #rows are 232803 output$download 2... output$tic.basepeak <- renderPlot({ executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_021_S553626_SPEXP4-23-WT-2_23-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_012_S553618_SPEXP4-22-WT-2_22-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_009_S553615_SPEXP4-19-KO-1_19-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_014_S553620_SPEXP4-22-KO-2_22-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_003_S553610_SPEXP4-DMSO-WT-2_DMSO-WT_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_011_S553617_SPEXP4-22-WT-1_22-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_005_S553612_SPEXP4-DMSO-KO-2_DMSO-KO_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_018_S553623_SPEXP4-20-KO-1_20-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_007_S553614_SPEXP4-19-WT-2_19-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_019_S553624_SPEXP4-20-KO-2_20-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_002_S553609_SPEXP4-DMSO-WT-1_DMSO-WT_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_020_S553625_SPEXP4-23-WT-1_23-WT.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_013_S553619_SPEXP4-22-KO-1_22-KO.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_017_S553622_SPEXP4-20-WT-2_20-WT.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_004_S553611_SPEXP4-DMSO-KO-1_DMSO-KO_rep.raw qc ... renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_010_S553616_SPEXP4-19-KO-2_19-KO.raw qc ... renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_006_S553613_SPEXP4-19-WT-1_19-WT.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_016_S553621_SPEXP4-20-WT-1_20-WT.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 299530 output$download 2... ggsave to file /tmp/Rtmp69F6Wt/rawDiag-2a8f3624f8ce8d.pdf generated pdf /tmp/Rtmp69F6Wt/rawDiag-2a8f3624f8ce8d.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 293215, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32698), created = "2023-09-06 08:46:26", createdby = "antdit", deletable = "true", description = "input files:\np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_021_S553626_SPEXP4-23-WT-2_23-WT.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_020_S553625_SPEXP4-23-WT-1_23-WT.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_012_S553618_SPEXP4-22-WT-2_22-WT.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_011_S553617_SPEXP4-22-WT-1_22-WT.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_014_S553620_SPEXP4-22-KO-2_22-KO.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_013_S553619_SPEXP4-22-KO-1_22-KO.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_018_S553623_SPEXP4-20-KO-1_20-KO.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_019_S553624_SPEXP4-20-KO-2_20-KO.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_017_S553622_SPEXP4-20-WT-2_20-WT.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_016_S553621_SPEXP4-20-WT-1_20-WT.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_003_S553610_SPEXP4-DMSO-WT-2_DMSO-WT_rep.raw\np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_002_S553609_SPEXP4-DMSO-WT-1_DMSO-WT_rep.raw\np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_005_S553612_SPEXP4-DMSO-KO-2_DMSO-KO_rep.raw\np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_004_S553611_SPEXP4-DMSO-KO-1_DMSO-KO_rep.raw\np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_007_S553614_SPEXP4-19-WT-2_19-WT.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_006_S553613_SPEXP4-19-WT-1_19-WT.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_010_S553616_SPEXP4-19-KO-2_19-KO.raw \np32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_009_S553615_SPEXP4-19-KO-1_19-KO.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2355067), list(`_classname` = "resource", `_id` = 2355065), list(`_classname` = "resource", `_id` = 2355063)), modified = "2023-09-06 08:46:26", modifiedby = "antdit", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2355071, container = list(`_classname` = "order", `_id` = 32698), created = "2023-09-06 08:46:28", createdby = "antdit", deletable = "true", filechecksum = "f4e64a4910582079e70a85404f0a0a6d", junk = "false", modified = "2023-09-06 08:46:28", modifiedby = "antdit", name = "WU293215-20230906-0846-rawDiag.pdf", relativepath = "container_32698/workunit_293215/WU293215-20230906-0846-rawDiag.pdf", size = "562775", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32698/workunit_293215/WU293215-20230906-0846-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32698/workunit_293215/WU293215-20230906-0846-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293215))) The current plot is available as workunit 293215 #rows are 299530 output$download 1... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_009_S553615_SPEXP4-19-KO-1_19-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_014_S553620_SPEXP4-22-KO-2_22-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_012_S553618_SPEXP4-22-WT-2_22-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_021_S553626_SPEXP4-23-WT-2_23-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_003_S553610_SPEXP4-DMSO-WT-2_DMSO-WT_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_011_S553617_SPEXP4-22-WT-1_22-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_005_S553612_SPEXP4-DMSO-KO-2_DMSO-KO_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_007_S553614_SPEXP4-19-WT-2_19-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_002_S553609_SPEXP4-DMSO-WT-1_DMSO-WT_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_020_S553625_SPEXP4-23-WT-1_23-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_013_S553619_SPEXP4-22-KO-1_22-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_010_S553616_SPEXP4-19-KO-2_19-KO.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_004_S553611_SPEXP4-DMSO-KO-1_DMSO-KO_rep.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_006_S553613_SPEXP4-19-WT-1_19-WT.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 232637 executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_021_S553626_SPEXP4-23-WT-2_23-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_012_S553618_SPEXP4-22-WT-2_22-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_009_S553615_SPEXP4-19-KO-1_19-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_014_S553620_SPEXP4-22-KO-2_22-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_003_S553610_SPEXP4-DMSO-WT-2_DMSO-WT_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_011_S553617_SPEXP4-22-WT-1_22-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_005_S553612_SPEXP4-DMSO-KO-2_DMSO-KO_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_007_S553614_SPEXP4-19-WT-2_19-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_002_S553609_SPEXP4-DMSO-WT-1_DMSO-WT_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_020_S553625_SPEXP4-23-WT-1_23-WT.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_013_S553619_SPEXP4-22-KO-1_22-KO.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_010_S553616_SPEXP4-19-KO-2_19-KO.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_004_S553611_SPEXP4-DMSO-KO-1_DMSO-KO_rep.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32698/Proteomics/EXPLORIS_1/analytic_20230905/20230905_C32698_006_S553613_SPEXP4-19-WT-1_19-WT.raw qc ... renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode Execution halted