Listening on http://127.0.0.1:36917 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_014_S558474_FAM98C_3_Group_3_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_003_S558470_FAM98B_2_Group_2_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_010_S558467_FAM98A_2_Group_1_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_008_S558472_FAM98C_1_Group_3_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_002_S558469_FAM98B_1_Group_2_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_011_S558468_FAM98A_3_Group_1_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_015_S558471_FAM98B_3_Group_2_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_004_S558466_FAM98A_1_Group_1_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_016_S558473_FAM98C_2_Group_3_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 330704 output$tic.basepeak <- renderPlot({ #rows are 330704 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpcZgO3x/rawDiag-15013448f9728e.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-15013448f9728e.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293636, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:02:26", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_008_S558472_FAM98C_1_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_011_S558468_FAM98A_3_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_014_S558474_FAM98C_3_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_003_S558470_FAM98B_2_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_010_S558467_FAM98A_2_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_002_S558469_FAM98B_1_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_015_S558471_FAM98B_3_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_004_S558466_FAM98A_1_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_016_S558473_FAM98C_2_Group_3_DDA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358170), list(`_classname` = "resource", `_id` = 2358169), list(`_classname` = "resource", `_id` = 2358168), list(`_classname` = "resource", `_id` = 2358167), list(`_classname` = "resource", `_id` = 2358166), list(`_classname` = "resource", `_id` = 2358165), list(`_classname` = "resource", `_id` = 2358164), list(`_classname` = "resource", `_id` = 2358163), list(`_classname` = "resource", `_id` = 2358162), list( `_classname` = "resource", `_id` = 2358161), list(`_classname` = "resource", `_id` = 2358160), list(`_classname` = "resource", `_id` = 2358159)), modified = "2023-09-18 09:02:26", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358179, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:02:28", createdby = "tobiasko", deletable = "true", filechecksum = "5c65efa6a1b07d50dc4987025305c8cb", junk = "false", modified = "2023-09-18 09:02:28", modifiedby = "tobiasko", name = "WU293636-20230918-0902-rawDiag.pdf", relativepath = "container_32787/workunit_293636/WU293636-20230918-0902-rawDiag.pdf", size = "357077", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293636/WU293636-20230918-0902-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293636/WU293636-20230918-0902-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293636))) The current plot is available as workunit 293636 #rows are 330704 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 330704 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-1501344d51a2e9.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpcZgO3x/rawDiag-1501344d51a2e9.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293637, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:02:55", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_008_S558472_FAM98C_1_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_011_S558468_FAM98A_3_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_014_S558474_FAM98C_3_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_003_S558470_FAM98B_2_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_010_S558467_FAM98A_2_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_002_S558469_FAM98B_1_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_015_S558471_FAM98B_3_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_004_S558466_FAM98A_1_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_016_S558473_FAM98C_2_Group_3_DDA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358170), list(`_classname` = "resource", `_id` = 2358169), list(`_classname` = "resource", `_id` = 2358168), list(`_classname` = "resource", `_id` = 2358167), list(`_classname` = "resource", `_id` = 2358166), list(`_classname` = "resource", `_id` = 2358165), list(`_classname` = "resource", `_id` = 2358164), list(`_classname` = "resource", `_id` = 2358163), list(`_classname` = "resource", `_id` = 2358162), list( `_classname` = "resource", `_id` = 2358161), list(`_classname` = "resource", `_id` = 2358160), list(`_classname` = "resource", `_id` = 2358159)), modified = "2023-09-18 09:02:55", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358180, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:02:57", createdby = "tobiasko", deletable = "true", filechecksum = "e91d07f96d6709ad7df071bbc70950e1", junk = "false", modified = "2023-09-18 09:02:57", modifiedby = "tobiasko", name = "WU293637-20230918-0902-rawDiag.pdf", relativepath = "container_32787/workunit_293637/WU293637-20230918-0902-rawDiag.pdf", size = "348477", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293637/WU293637-20230918-0902-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293637/WU293637-20230918-0902-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293637))) The current plot is available as workunit 293637 #rows are 330704 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 330704 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-15013417fa0cb0.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpcZgO3x/rawDiag-15013417fa0cb0.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293638, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:03:58", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_008_S558472_FAM98C_1_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_011_S558468_FAM98A_3_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_014_S558474_FAM98C_3_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_003_S558470_FAM98B_2_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_010_S558467_FAM98A_2_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_002_S558469_FAM98B_1_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_015_S558471_FAM98B_3_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_004_S558466_FAM98A_1_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_016_S558473_FAM98C_2_Group_3_DDA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358170), list(`_classname` = "resource", `_id` = 2358169), list(`_classname` = "resource", `_id` = 2358168), list(`_classname` = "resource", `_id` = 2358167), list(`_classname` = "resource", `_id` = 2358166), list(`_classname` = "resource", `_id` = 2358165), list(`_classname` = "resource", `_id` = 2358164), list(`_classname` = "resource", `_id` = 2358163), list(`_classname` = "resource", `_id` = 2358162), list( `_classname` = "resource", `_id` = 2358161), list(`_classname` = "resource", `_id` = 2358160), list(`_classname` = "resource", `_id` = 2358159)), modified = "2023-09-18 09:03:58", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358181, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:04:00", createdby = "tobiasko", deletable = "true", filechecksum = "4fb1f87ddaccc0ebc075147a5b4171c3", junk = "false", modified = "2023-09-18 09:04:00", modifiedby = "tobiasko", name = "WU293638-20230918-0903-rawDiag.pdf", relativepath = "container_32787/workunit_293638/WU293638-20230918-0903-rawDiag.pdf", size = "1227223", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293638/WU293638-20230918-0903-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293638/WU293638-20230918-0903-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293638))) The current plot is available as workunit 293638 #rows are 330704 output$download 1... Warning: Removed 3 rows containing non-finite values (`stat_smooth()`). #rows are 330704 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-15013449483273.pdf Warning: Removed 3 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpcZgO3x/rawDiag-15013449483273.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293639, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:04:30", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_008_S558472_FAM98C_1_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_011_S558468_FAM98A_3_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_014_S558474_FAM98C_3_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_003_S558470_FAM98B_2_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_010_S558467_FAM98A_2_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_002_S558469_FAM98B_1_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_015_S558471_FAM98B_3_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_004_S558466_FAM98A_1_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_016_S558473_FAM98C_2_Group_3_DDA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358170), list(`_classname` = "resource", `_id` = 2358169), list(`_classname` = "resource", `_id` = 2358168), list(`_classname` = "resource", `_id` = 2358167), list(`_classname` = "resource", `_id` = 2358166), list(`_classname` = "resource", `_id` = 2358165), list(`_classname` = "resource", `_id` = 2358164), list(`_classname` = "resource", `_id` = 2358163), list(`_classname` = "resource", `_id` = 2358162), list( `_classname` = "resource", `_id` = 2358161), list(`_classname` = "resource", `_id` = 2358160), list(`_classname` = "resource", `_id` = 2358159)), modified = "2023-09-18 09:04:30", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358182, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:04:31", createdby = "tobiasko", deletable = "true", filechecksum = "d50331afcfba1ae78662e6c42f0b4b9e", junk = "false", modified = "2023-09-18 09:04:31", modifiedby = "tobiasko", name = "WU293639-20230918-0904-rawDiag.pdf", relativepath = "container_32787/workunit_293639/WU293639-20230918-0904-rawDiag.pdf", size = "196837", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293639/WU293639-20230918-0904-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293639/WU293639-20230918-0904-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293639))) The current plot is available as workunit 293639 #rows are 330704 output$download 1... #rows are 330704 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-1501347b4073cb.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-1501347b4073cb.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293640, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:05:21", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_008_S558472_FAM98C_1_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_011_S558468_FAM98A_3_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_014_S558474_FAM98C_3_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_003_S558470_FAM98B_2_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_010_S558467_FAM98A_2_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_002_S558469_FAM98B_1_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_015_S558471_FAM98B_3_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_004_S558466_FAM98A_1_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_016_S558473_FAM98C_2_Group_3_DDA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358170), list(`_classname` = "resource", `_id` = 2358169), list(`_classname` = "resource", `_id` = 2358168), list(`_classname` = "resource", `_id` = 2358167), list(`_classname` = "resource", `_id` = 2358166), list(`_classname` = "resource", `_id` = 2358165), list(`_classname` = "resource", `_id` = 2358164), list(`_classname` = "resource", `_id` = 2358163), list(`_classname` = "resource", `_id` = 2358162), list( `_classname` = "resource", `_id` = 2358161), list(`_classname` = "resource", `_id` = 2358160), list(`_classname` = "resource", `_id` = 2358159)), modified = "2023-09-18 09:05:21", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358183, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:05:23", createdby = "tobiasko", deletable = "true", filechecksum = "41e6417c1558f88608bc35736e33ad37", junk = "false", modified = "2023-09-18 09:05:23", modifiedby = "tobiasko", name = "WU293640-20230918-0905-rawDiag.pdf", relativepath = "container_32787/workunit_293640/WU293640-20230918-0905-rawDiag.pdf", size = "1401583", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293640/WU293640-20230918-0905-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293640/WU293640-20230918-0905-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293640))) The current plot is available as workunit 293640 #rows are 330704 output$download 1... #rows are 330704 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-1501343533f219.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-1501343533f219.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293641, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:05:38", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_008_S558472_FAM98C_1_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_011_S558468_FAM98A_3_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_014_S558474_FAM98C_3_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_003_S558470_FAM98B_2_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_010_S558467_FAM98A_2_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_002_S558469_FAM98B_1_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_015_S558471_FAM98B_3_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_004_S558466_FAM98A_1_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_016_S558473_FAM98C_2_Group_3_DDA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358170), list(`_classname` = "resource", `_id` = 2358169), list(`_classname` = "resource", `_id` = 2358168), list(`_classname` = "resource", `_id` = 2358167), list(`_classname` = "resource", `_id` = 2358166), list(`_classname` = "resource", `_id` = 2358165), list(`_classname` = "resource", `_id` = 2358164), list(`_classname` = "resource", `_id` = 2358163), list(`_classname` = "resource", `_id` = 2358162), list( `_classname` = "resource", `_id` = 2358161), list(`_classname` = "resource", `_id` = 2358160), list(`_classname` = "resource", `_id` = 2358159)), modified = "2023-09-18 09:05:38", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358184, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:05:39", createdby = "tobiasko", deletable = "true", filechecksum = "2142e8d629f3f081caad880957d0f10c", junk = "false", modified = "2023-09-18 09:05:39", modifiedby = "tobiasko", name = "WU293641-20230918-0905-rawDiag.pdf", relativepath = "container_32787/workunit_293641/WU293641-20230918-0905-rawDiag.pdf", size = "12529", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293641/WU293641-20230918-0905-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293641/WU293641-20230918-0905-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293641))) The current plot is available as workunit 293641 #rows are 330704 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 330704 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-1501341b2ed22e.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-1501341b2ed22e.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293642, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:06:15", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_008_S558472_FAM98C_1_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_011_S558468_FAM98A_3_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_014_S558474_FAM98C_3_Group_3_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_003_S558470_FAM98B_2_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DDA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_010_S558467_FAM98A_2_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_002_S558469_FAM98B_1_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_015_S558471_FAM98B_3_Group_2_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_004_S558466_FAM98A_1_Group_1_DDA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230914/20230914_C32787_016_S558473_FAM98C_2_Group_3_DDA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358170), list(`_classname` = "resource", `_id` = 2358169), list(`_classname` = "resource", `_id` = 2358168), list(`_classname` = "resource", `_id` = 2358167), list(`_classname` = "resource", `_id` = 2358166), list(`_classname` = "resource", `_id` = 2358165), list(`_classname` = "resource", `_id` = 2358164), list(`_classname` = "resource", `_id` = 2358163), list(`_classname` = "resource", `_id` = 2358162), list( `_classname` = "resource", `_id` = 2358161), list(`_classname` = "resource", `_id` = 2358160), list(`_classname` = "resource", `_id` = 2358159)), modified = "2023-09-18 09:06:15", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358185, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 09:06:17", createdby = "tobiasko", deletable = "true", filechecksum = "9214b1dcd31bd844a2a6b2cf16558dcc", junk = "false", modified = "2023-09-18 09:06:17", modifiedby = "tobiasko", name = "WU293642-20230918-0906-rawDiag.pdf", relativepath = "container_32787/workunit_293642/WU293642-20230918-0906-rawDiag.pdf", size = "78769", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293642/WU293642-20230918-0906-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293642/WU293642-20230918-0906-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293642))) The current plot is available as workunit 293642 #rows are 330704 output$download 1... #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 70995 output$tic.basepeak <- renderPlot({ #rows are 70995 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpcZgO3x/rawDiag-15013468f824ed.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-15013468f824ed.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293648, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:31:45", createdby = "tobiasko", deletable = "true", description = "input files:\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358199), list(`_classname` = "resource", `_id` = 2358198)), modified = "2023-09-18 09:31:45", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358202, container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:31:47", createdby = "tobiasko", deletable = "true", filechecksum = "74375658f40e2afd034ff74b4d21b365", junk = "false", modified = "2023-09-18 09:31:47", modifiedby = "tobiasko", name = "WU293648-20230918-0931-rawDiag.pdf", relativepath = "container_32833/workunit_293648/WU293648-20230918-0931-rawDiag.pdf", size = "63472", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32833/workunit_293648/WU293648-20230918-0931-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32833/workunit_293648/WU293648-20230918-0931-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293648))) The current plot is available as workunit 293648 #rows are 70995 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 70995 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-150134e31caa1.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpcZgO3x/rawDiag-150134e31caa1.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293649, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:31:56", createdby = "tobiasko", deletable = "true", description = "input files:\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358199), list(`_classname` = "resource", `_id` = 2358198)), modified = "2023-09-18 09:31:56", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358203, container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:31:57", createdby = "tobiasko", deletable = "true", filechecksum = "ea62d61486727e405d70d4c0f4f2c0ec", junk = "false", modified = "2023-09-18 09:31:57", modifiedby = "tobiasko", name = "WU293649-20230918-0931-rawDiag.pdf", relativepath = "container_32833/workunit_293649/WU293649-20230918-0931-rawDiag.pdf", size = "65422", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32833/workunit_293649/WU293649-20230918-0931-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32833/workunit_293649/WU293649-20230918-0931-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293649))) The current plot is available as workunit 293649 #rows are 70995 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 70995 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-150134655c9ffb.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpcZgO3x/rawDiag-150134655c9ffb.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293650, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:06", createdby = "tobiasko", deletable = "true", description = "input files:\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358199), list(`_classname` = "resource", `_id` = 2358198)), modified = "2023-09-18 09:32:06", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358204, container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:07", createdby = "tobiasko", deletable = "true", filechecksum = "4c6a4052994815bc648ca899ae830825", junk = "false", modified = "2023-09-18 09:32:07", modifiedby = "tobiasko", name = "WU293650-20230918-0932-rawDiag.pdf", relativepath = "container_32833/workunit_293650/WU293650-20230918-0932-rawDiag.pdf", size = "42709", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32833/workunit_293650/WU293650-20230918-0932-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32833/workunit_293650/WU293650-20230918-0932-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293650))) The current plot is available as workunit 293650 #rows are 70995 output$download 1... #rows are 70995 output$download 2... Warning: Removed 2 rows containing non-finite values (`stat_smooth()`). #rows are 70995 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-1501347746264e.pdf Warning: Removed 2 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpcZgO3x/rawDiag-1501347746264e.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293651, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:17", createdby = "tobiasko", deletable = "true", description = "input files:\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358199), list(`_classname` = "resource", `_id` = 2358198)), modified = "2023-09-18 09:32:17", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358205, container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:18", createdby = "tobiasko", deletable = "true", filechecksum = "0bd79c0a9e7b266d824658ca8640f84f", junk = "false", modified = "2023-09-18 09:32:18", modifiedby = "tobiasko", name = "WU293651-20230918-0932-rawDiag.pdf", relativepath = "container_32833/workunit_293651/WU293651-20230918-0932-rawDiag.pdf", size = "33259", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32833/workunit_293651/WU293651-20230918-0932-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32833/workunit_293651/WU293651-20230918-0932-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293651))) The current plot is available as workunit 293651 #rows are 70995 output$download 1... #rows are 70995 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-1501344497c937.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-1501344497c937.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293652, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:27", createdby = "tobiasko", deletable = "true", description = "input files:\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358199), list(`_classname` = "resource", `_id` = 2358198)), modified = "2023-09-18 09:32:27", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358206, container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:28", createdby = "tobiasko", deletable = "true", filechecksum = "b7a3eb9946d781cb2ff27c3c81b59290", junk = "false", modified = "2023-09-18 09:32:28", modifiedby = "tobiasko", name = "WU293652-20230918-0932-rawDiag.pdf", relativepath = "container_32833/workunit_293652/WU293652-20230918-0932-rawDiag.pdf", size = "392515", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32833/workunit_293652/WU293652-20230918-0932-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32833/workunit_293652/WU293652-20230918-0932-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293652))) The current plot is available as workunit 293652 #rows are 70995 output$download 1... #rows are 70995 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-1501345c91d5e8.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-1501345c91d5e8.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293653, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:40", createdby = "tobiasko", deletable = "true", description = "input files:\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358199), list(`_classname` = "resource", `_id` = 2358198)), modified = "2023-09-18 09:32:40", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358207, container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:41", createdby = "tobiasko", deletable = "true", filechecksum = "152f1c74d502cf78750ed2fd71c34c8a", junk = "false", modified = "2023-09-18 09:32:41", modifiedby = "tobiasko", name = "WU293653-20230918-0932-rawDiag.pdf", relativepath = "container_32833/workunit_293653/WU293653-20230918-0932-rawDiag.pdf", size = "6475", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32833/workunit_293653/WU293653-20230918-0932-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32833/workunit_293653/WU293653-20230918-0932-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293653))) The current plot is available as workunit 293653 #rows are 70995 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 70995 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-15013425da085b.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-15013425da085b.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293654, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:32:59", createdby = "tobiasko", deletable = "true", description = "input files:\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw\np32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358199), list(`_classname` = "resource", `_id` = 2358198)), modified = "2023-09-18 09:32:59", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358208, container = list(`_classname` = "order", `_id` = 32833), created = "2023-09-18 09:33:00", createdby = "tobiasko", deletable = "true", filechecksum = "93d62d316932d432de63c858d24776f1", junk = "false", modified = "2023-09-18 09:33:00", modifiedby = "tobiasko", name = "WU293654-20230918-0932-rawDiag.pdf", relativepath = "container_32833/workunit_293654/WU293654-20230918-0932-rawDiag.pdf", size = "14076", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32833/workunit_293654/WU293654-20230918-0932-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32833/workunit_293654/WU293654-20230918-0932-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293654))) The current plot is available as workunit 293654 #rows are 70995 output$download 1... DEBUG renderPlot plotQCs #rows are 70995 output$download 1... output$tic.basepeak <- renderPlot({ #rows are 70995 output$download 2... output$tic.basepeak <- renderPlot({ executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_004_S558466_FAM98A_1_Group_1_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_010_S558467_FAM98A_2_Group_1_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_016_S558473_FAM98C_2_Group_3_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_015r_S558471_FAM98B_3_Group_2_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_014_S558474_FAM98C_3_Group_3_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_008_S558472_FAM98C_1_Group_3_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_011_S558468_FAM98A_3_Group_1_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_002_S558469_FAM98B_1_Group_2_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_003_S558470_FAM98B_2_Group_2_DIA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 1089218 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 1089218 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-15013479d8231d.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-15013479d8231d.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293668, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 11:11:36", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_004_S558466_FAM98A_1_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_010_S558467_FAM98A_2_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_016_S558473_FAM98C_2_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_015r_S558471_FAM98B_3_Group_2_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_014_S558474_FAM98C_3_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_008_S558472_FAM98C_1_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_011_S558468_FAM98A_3_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_002_S558469_FAM98B_1_Group_2_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_003_S558470_FAM98B_2_Group_2_DIA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358277), list(`_classname` = "resource", `_id` = 2358276), list(`_classname` = "resource", `_id` = 2358275), list(`_classname` = "resource", `_id` = 2358274), list(`_classname` = "resource", `_id` = 2358273), list(`_classname` = "resource", `_id` = 2358272), list(`_classname` = "resource", `_id` = 2358271), list(`_classname` = "resource", `_id` = 2358270), list(`_classname` = "resource", `_id` = 2358269), list( `_classname` = "resource", `_id` = 2358268), list(`_classname` = "resource", `_id` = 2358267), list(`_classname` = "resource", `_id` = 2358266)), modified = "2023-09-18 11:11:36", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358632, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 11:11:37", createdby = "tobiasko", deletable = "true", filechecksum = "d36e64c59149b5846d532d5fcbd6fa0f", junk = "false", modified = "2023-09-18 11:11:38", modifiedby = "tobiasko", name = "WU293668-20230918-1111-rawDiag.pdf", relativepath = "container_32787/workunit_293668/WU293668-20230918-1111-rawDiag.pdf", size = "188449", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293668/WU293668-20230918-1111-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293668/WU293668-20230918-1111-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293668))) The current plot is available as workunit 293668 #rows are 1089218 output$download 1... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 1089218 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-15013430933961.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpcZgO3x/rawDiag-15013430933961.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293669, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 11:12:10", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_004_S558466_FAM98A_1_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_010_S558467_FAM98A_2_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_016_S558473_FAM98C_2_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_015r_S558471_FAM98B_3_Group_2_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_014_S558474_FAM98C_3_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_008_S558472_FAM98C_1_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_011_S558468_FAM98A_3_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_002_S558469_FAM98B_1_Group_2_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_003_S558470_FAM98B_2_Group_2_DIA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358277), list(`_classname` = "resource", `_id` = 2358276), list(`_classname` = "resource", `_id` = 2358275), list(`_classname` = "resource", `_id` = 2358274), list(`_classname` = "resource", `_id` = 2358273), list(`_classname` = "resource", `_id` = 2358272), list(`_classname` = "resource", `_id` = 2358271), list(`_classname` = "resource", `_id` = 2358270), list(`_classname` = "resource", `_id` = 2358269), list( `_classname` = "resource", `_id` = 2358268), list(`_classname` = "resource", `_id` = 2358267), list(`_classname` = "resource", `_id` = 2358266)), modified = "2023-09-18 11:12:10", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358633, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 11:12:11", createdby = "tobiasko", deletable = "true", filechecksum = "47394b0e723f1811b971ab31fdc8c57e", junk = "false", modified = "2023-09-18 11:12:11", modifiedby = "tobiasko", name = "WU293669-20230918-1112-rawDiag.pdf", relativepath = "container_32787/workunit_293669/WU293669-20230918-1112-rawDiag.pdf", size = "307480", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293669/WU293669-20230918-1112-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293669/WU293669-20230918-1112-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293669))) The current plot is available as workunit 293669 #rows are 1089218 output$download 1... #rows are 1089218 output$download 2... #rows are 1089218 output$download 2... ggsave to file /tmp/RtmpcZgO3x/rawDiag-15013467266c55.pdf generated pdf /tmp/RtmpcZgO3x/rawDiag-15013467266c55.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 293670, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 11:14:49", createdby = "tobiasko", deletable = "true", description = "input files:\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_004_S558466_FAM98A_1_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_010_S558467_FAM98A_2_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_016_S558473_FAM98C_2_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_015r_S558471_FAM98B_3_Group_2_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_014_S558474_FAM98C_3_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_005_S558476_3xFLAG-mEGFP_2_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_008_S558472_FAM98C_1_Group_3_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_011_S558468_FAM98A_3_Group_1_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_009_S558475_3xFLAG-mEGFP_1_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_002_S558469_FAM98B_1_Group_2_DIA.raw \np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_017_S558477_3xFLAG-mEGFP_3_Group_4_DIA.raw\np32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_003_S558470_FAM98B_2_Group_2_DIA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2358277), list(`_classname` = "resource", `_id` = 2358276), list(`_classname` = "resource", `_id` = 2358275), list(`_classname` = "resource", `_id` = 2358274), list(`_classname` = "resource", `_id` = 2358273), list(`_classname` = "resource", `_id` = 2358272), list(`_classname` = "resource", `_id` = 2358271), list(`_classname` = "resource", `_id` = 2358270), list(`_classname` = "resource", `_id` = 2358269), list( `_classname` = "resource", `_id` = 2358268), list(`_classname` = "resource", `_id` = 2358267), list(`_classname` = "resource", `_id` = 2358266)), modified = "2023-09-18 11:14:49", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2358634, container = list(`_classname` = "order", `_id` = 32787), created = "2023-09-18 11:14:51", createdby = "tobiasko", deletable = "true", filechecksum = "1ef05957edcd39549233c6139afbdb9d", junk = "false", modified = "2023-09-18 11:14:51", modifiedby = "tobiasko", name = "WU293670-20230918-1114-rawDiag.pdf", relativepath = "container_32787/workunit_293670/WU293670-20230918-1114-rawDiag.pdf", size = "1994186", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32787/workunit_293670/WU293670-20230918-1114-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32787/workunit_293670/WU293670-20230918-1114-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 293670))) The current plot is available as workunit 293670 #rows are 1089218 output$download 1... #rows are 1089218 output$download 2... Execution halted