Listening on http://127.0.0.1:39783 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32312/Proteomics/EXPLORIS_2/analytic_20230725_dia/20230725_C32312_008_autoQC4L.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 36988 output$tic.basepeak <- renderPlot({ #rows are 36988 output$download 2... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 36988 output$download 2... #rows are 36988 output$download 2... #rows are 36988 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c992591e8a4.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c992591e8a4.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294482, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "project", `_id` = 3000), created = "2023-10-09 14:09:27", createdby = "cpanse", deletable = "true", description = "input files:\np32312/Proteomics/EXPLORIS_2/analytic_20230725_dia/20230725_C32312_008_autoQC4L.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2339220)), modified = "2023-10-09 14:09:27", modifiedby = "cpanse", name = "mass heatmap plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368234, container = list(`_classname` = "project", `_id` = 3000), created = "2023-10-09 14:09:28", createdby = "cpanse", deletable = "true", filechecksum = "66e610cb33b4e1acb25d2cf2d5294de4", junk = "false", modified = "2023-10-09 14:09:28", modifiedby = "cpanse", name = "WU294482-20231009-1409-rawDiag.pdf", relativepath = "container_3000/workunit_294482/WU294482-20231009-1409-rawDiag.pdf", size = "44252", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_3000/workunit_294482/WU294482-20231009-1409-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_3000/workunit_294482/WU294482-20231009-1409-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294482))) The current plot is available as workunit 294482 #rows are 36988 output$download 1... saving 'login and webservicepassword' ... #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_008_S568130_wt-01.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_002_S568135_KO-03.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_004_S568134_KO-02.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_007_S568133_KO-01.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_003_S568131_wt-02.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_006_S568132_wt-03.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 153734 output$tic.basepeak <- renderPlot({ #rows are 153734 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c99e376c0e.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c99e376c0e.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294560, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:28:26", createdby = "tobiasko", deletable = "true", description = "input files:\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_007_S568133_KO-01.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_004_S568134_KO-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_006_S568132_wt-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_002_S568135_KO-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_003_S568131_wt-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_008_S568130_wt-01.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368758), list(`_classname` = "resource", `_id` = 2368757), list(`_classname` = "resource", `_id` = 2368756), list(`_classname` = "resource", `_id` = 2368755), list(`_classname` = "resource", `_id` = 2368754), list(`_classname` = "resource", `_id` = 2368753)), modified = "2023-10-11 08:28:26", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368759, container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:28:27", createdby = "tobiasko", deletable = "true", filechecksum = "b7ea1697d512b0d9cf0af6a50a421427", junk = "false", modified = "2023-10-11 08:28:27", modifiedby = "tobiasko", name = "WU294560-20231011-0828-rawDiag.pdf", relativepath = "container_32978/workunit_294560/WU294560-20231011-0828-rawDiag.pdf", size = "225413", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32978/workunit_294560/WU294560-20231011-0828-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32978/workunit_294560/WU294560-20231011-0828-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294560))) The current plot is available as workunit 294560 #rows are 153734 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 153734 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c998eb6983.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpvKjaT9/rawDiag-157c998eb6983.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294561, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:28:43", createdby = "tobiasko", deletable = "true", description = "input files:\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_007_S568133_KO-01.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_004_S568134_KO-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_006_S568132_wt-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_002_S568135_KO-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_003_S568131_wt-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_008_S568130_wt-01.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368758), list(`_classname` = "resource", `_id` = 2368757), list(`_classname` = "resource", `_id` = 2368756), list(`_classname` = "resource", `_id` = 2368755), list(`_classname` = "resource", `_id` = 2368754), list(`_classname` = "resource", `_id` = 2368753)), modified = "2023-10-11 08:28:43", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368760, container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:28:44", createdby = "tobiasko", deletable = "true", filechecksum = "ee403c7c3e7ea6d77d5b32e2eed06295", junk = "false", modified = "2023-10-11 08:28:44", modifiedby = "tobiasko", name = "WU294561-20231011-0828-rawDiag.pdf", relativepath = "container_32978/workunit_294561/WU294561-20231011-0828-rawDiag.pdf", size = "186839", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32978/workunit_294561/WU294561-20231011-0828-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32978/workunit_294561/WU294561-20231011-0828-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294561))) The current plot is available as workunit 294561 #rows are 153734 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 153734 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c991d51fbfe.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpvKjaT9/rawDiag-157c991d51fbfe.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294562, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:29:06", createdby = "tobiasko", deletable = "true", description = "input files:\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_007_S568133_KO-01.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_004_S568134_KO-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_006_S568132_wt-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_002_S568135_KO-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_003_S568131_wt-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_008_S568130_wt-01.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368758), list(`_classname` = "resource", `_id` = 2368757), list(`_classname` = "resource", `_id` = 2368756), list(`_classname` = "resource", `_id` = 2368755), list(`_classname` = "resource", `_id` = 2368754), list(`_classname` = "resource", `_id` = 2368753)), modified = "2023-10-11 08:29:06", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368761, container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:29:07", createdby = "tobiasko", deletable = "true", filechecksum = "192b67e83dcde4a7d37c338d4c36bc0c", junk = "false", modified = "2023-10-11 08:29:07", modifiedby = "tobiasko", name = "WU294562-20231011-0829-rawDiag.pdf", relativepath = "container_32978/workunit_294562/WU294562-20231011-0829-rawDiag.pdf", size = "360943", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32978/workunit_294562/WU294562-20231011-0829-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32978/workunit_294562/WU294562-20231011-0829-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294562))) The current plot is available as workunit 294562 #rows are 153734 output$download 1... #rows are 153734 output$download 2... Warning: Removed 4 rows containing non-finite values (`stat_smooth()`). #rows are 153734 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c99406befaa.pdf Warning: Removed 4 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpvKjaT9/rawDiag-157c99406befaa.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294563, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:29:22", createdby = "tobiasko", deletable = "true", description = "input files:\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_007_S568133_KO-01.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_004_S568134_KO-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_006_S568132_wt-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_002_S568135_KO-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_003_S568131_wt-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_008_S568130_wt-01.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368758), list(`_classname` = "resource", `_id` = 2368757), list(`_classname` = "resource", `_id` = 2368756), list(`_classname` = "resource", `_id` = 2368755), list(`_classname` = "resource", `_id` = 2368754), list(`_classname` = "resource", `_id` = 2368753)), modified = "2023-10-11 08:29:22", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368762, container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:29:23", createdby = "tobiasko", deletable = "true", filechecksum = "de971aee386b0f307d378643443d9481", junk = "false", modified = "2023-10-11 08:29:23", modifiedby = "tobiasko", name = "WU294563-20231011-0829-rawDiag.pdf", relativepath = "container_32978/workunit_294563/WU294563-20231011-0829-rawDiag.pdf", size = "124200", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32978/workunit_294563/WU294563-20231011-0829-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32978/workunit_294563/WU294563-20231011-0829-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294563))) The current plot is available as workunit 294563 #rows are 153734 output$download 1... #rows are 153734 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c997d9fb8e9.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c997d9fb8e9.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294564, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:29:38", createdby = "tobiasko", deletable = "true", description = "input files:\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_007_S568133_KO-01.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_004_S568134_KO-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_006_S568132_wt-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_002_S568135_KO-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_003_S568131_wt-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_008_S568130_wt-01.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368758), list(`_classname` = "resource", `_id` = 2368757), list(`_classname` = "resource", `_id` = 2368756), list(`_classname` = "resource", `_id` = 2368755), list(`_classname` = "resource", `_id` = 2368754), list(`_classname` = "resource", `_id` = 2368753)), modified = "2023-10-11 08:29:38", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368763, container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:29:40", createdby = "tobiasko", deletable = "true", filechecksum = "9138e752d8c730681f75554eca8471fd", junk = "false", modified = "2023-10-11 08:29:40", modifiedby = "tobiasko", name = "WU294564-20231011-0829-rawDiag.pdf", relativepath = "container_32978/workunit_294564/WU294564-20231011-0829-rawDiag.pdf", size = "573937", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32978/workunit_294564/WU294564-20231011-0829-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32978/workunit_294564/WU294564-20231011-0829-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294564))) The current plot is available as workunit 294564 #rows are 153734 output$download 1... #rows are 153734 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c99529797d4.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c99529797d4.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294565, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:29:48", createdby = "tobiasko", deletable = "true", description = "input files:\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_007_S568133_KO-01.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_004_S568134_KO-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_006_S568132_wt-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_002_S568135_KO-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_003_S568131_wt-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_008_S568130_wt-01.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368758), list(`_classname` = "resource", `_id` = 2368757), list(`_classname` = "resource", `_id` = 2368756), list(`_classname` = "resource", `_id` = 2368755), list(`_classname` = "resource", `_id` = 2368754), list(`_classname` = "resource", `_id` = 2368753)), modified = "2023-10-11 08:29:48", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368764, container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:29:49", createdby = "tobiasko", deletable = "true", filechecksum = "01109ef2c7beab19802ab53f117543f3", junk = "false", modified = "2023-10-11 08:29:49", modifiedby = "tobiasko", name = "WU294565-20231011-0829-rawDiag.pdf", relativepath = "container_32978/workunit_294565/WU294565-20231011-0829-rawDiag.pdf", size = "8531", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32978/workunit_294565/WU294565-20231011-0829-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32978/workunit_294565/WU294565-20231011-0829-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294565))) The current plot is available as workunit 294565 #rows are 153734 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 153734 output$download 2... DEBUG renderPlot plotQCs #rows are 153734 output$download 2... #rows are 153734 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c99377ba676.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c99377ba676.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294566, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:30:56", createdby = "tobiasko", deletable = "true", description = "input files:\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_007_S568133_KO-01.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_004_S568134_KO-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_006_S568132_wt-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_002_S568135_KO-03.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_003_S568131_wt-02.raw\np32978/Proteomics/EXPLORIS_2/analytic_20231010_DDA/20231010_C32978_008_S568130_wt-01.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368758), list(`_classname` = "resource", `_id` = 2368757), list(`_classname` = "resource", `_id` = 2368756), list(`_classname` = "resource", `_id` = 2368755), list(`_classname` = "resource", `_id` = 2368754), list(`_classname` = "resource", `_id` = 2368753)), modified = "2023-10-11 08:30:56", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368765, container = list(`_classname` = "order", `_id` = 32978), created = "2023-10-11 08:30:58", createdby = "tobiasko", deletable = "true", filechecksum = "edf1fc69ca872fe8ca546788c39966ed", junk = "false", modified = "2023-10-11 08:30:58", modifiedby = "tobiasko", name = "WU294566-20231011-0830-rawDiag.pdf", relativepath = "container_32978/workunit_294566/WU294566-20231011-0830-rawDiag.pdf", size = "52335", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32978/workunit_294566/WU294566-20231011-0830-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32978/workunit_294566/WU294566-20231011-0830-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294566))) The current plot is available as workunit 294566 #rows are 153734 output$download 1... output$tic.basepeak <- renderPlot({ #rows are 153734 output$download 2... output$tic.basepeak <- renderPlot({ executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 16687 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 16687 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c996ba5bdbb.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c996ba5bdbb.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294568, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:39:53", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368766)), modified = "2023-10-11 08:39:53", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368767, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:39:54", createdby = "tobiasko", deletable = "true", filechecksum = "18f0c3a28b9b683dc9244f64d772efc5", junk = "false", modified = "2023-10-11 08:39:54", modifiedby = "tobiasko", name = "WU294568-20231011-0839-rawDiag.pdf", relativepath = "container_33029/workunit_294568/WU294568-20231011-0839-rawDiag.pdf", size = "63975", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294568/WU294568-20231011-0839-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294568/WU294568-20231011-0839-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294568))) The current plot is available as workunit 294568 #rows are 16687 output$download 1... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 16687 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c994cd3a4cc.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpvKjaT9/rawDiag-157c994cd3a4cc.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294569, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:40:11", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368766)), modified = "2023-10-11 08:40:11", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368768, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:40:12", createdby = "tobiasko", deletable = "true", filechecksum = "1261a9533553ed63d33a6e320e9763b1", junk = "false", modified = "2023-10-11 08:40:12", modifiedby = "tobiasko", name = "WU294569-20231011-0840-rawDiag.pdf", relativepath = "container_33029/workunit_294569/WU294569-20231011-0840-rawDiag.pdf", size = "32144", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294569/WU294569-20231011-0840-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294569/WU294569-20231011-0840-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294569))) The current plot is available as workunit 294569 #rows are 16687 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 16687 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c997cff5544.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpvKjaT9/rawDiag-157c997cff5544.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294570, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:40:25", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368766)), modified = "2023-10-11 08:40:25", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368769, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:40:26", createdby = "tobiasko", deletable = "true", filechecksum = "b40dcc74d6729c3df65fc9b3702d96b9", junk = "false", modified = "2023-10-11 08:40:26", modifiedby = "tobiasko", name = "WU294570-20231011-0840-rawDiag.pdf", relativepath = "container_33029/workunit_294570/WU294570-20231011-0840-rawDiag.pdf", size = "12972", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294570/WU294570-20231011-0840-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294570/WU294570-20231011-0840-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294570))) The current plot is available as workunit 294570 #rows are 16687 output$download 1... Warning: Removed 48 rows containing non-finite values (`stat_smooth()`). #rows are 16687 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c9921915ed7.pdf Warning: Removed 48 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpvKjaT9/rawDiag-157c9921915ed7.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294571, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:40:40", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368766)), modified = "2023-10-11 08:40:40", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368770, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:40:41", createdby = "tobiasko", deletable = "true", filechecksum = "6dfc33b08b3d9f3d112d472c39c9d3fc", junk = "false", modified = "2023-10-11 08:40:41", modifiedby = "tobiasko", name = "WU294571-20231011-0840-rawDiag.pdf", relativepath = "container_33029/workunit_294571/WU294571-20231011-0840-rawDiag.pdf", size = "38889", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294571/WU294571-20231011-0840-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294571/WU294571-20231011-0840-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294571))) The current plot is available as workunit 294571 #rows are 16687 output$download 1... #rows are 16687 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c993ed8b34b.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c993ed8b34b.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294572, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:40:49", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368766)), modified = "2023-10-11 08:40:49", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368771, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:40:50", createdby = "tobiasko", deletable = "true", filechecksum = "264d82e8f17400c68a89a819c5162e65", junk = "false", modified = "2023-10-11 08:40:50", modifiedby = "tobiasko", name = "WU294572-20231011-0840-rawDiag.pdf", relativepath = "container_33029/workunit_294572/WU294572-20231011-0840-rawDiag.pdf", size = "81863", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294572/WU294572-20231011-0840-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294572/WU294572-20231011-0840-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294572))) The current plot is available as workunit 294572 #rows are 16687 output$download 1... #rows are 16687 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c997f44a2f5.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c997f44a2f5.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294573, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:41:02", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368766)), modified = "2023-10-11 08:41:02", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368772, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:41:03", createdby = "tobiasko", deletable = "true", filechecksum = "e727111f224d688391a3090596d84889", junk = "false", modified = "2023-10-11 08:41:03", modifiedby = "tobiasko", name = "WU294573-20231011-0841-rawDiag.pdf", relativepath = "container_33029/workunit_294573/WU294573-20231011-0841-rawDiag.pdf", size = "6018", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294573/WU294573-20231011-0841-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294573/WU294573-20231011-0841-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294573))) The current plot is available as workunit 294573 #rows are 16687 output$download 1... Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 16687 output$download 2... ggsave to file /tmp/RtmpvKjaT9/rawDiag-157c994f7bf3b2.pdf generated pdf /tmp/RtmpvKjaT9/rawDiag-157c994f7bf3b2.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294574, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:41:29", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2368766)), modified = "2023-10-11 08:41:29", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2368773, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-11 08:41:30", createdby = "tobiasko", deletable = "true", filechecksum = "5ef5125ec03c04717fe23231ea4c9a41", junk = "false", modified = "2023-10-11 08:41:30", modifiedby = "tobiasko", name = "WU294574-20231011-0841-rawDiag.pdf", relativepath = "container_33029/workunit_294574/WU294574-20231011-0841-rawDiag.pdf", size = "14933", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294574/WU294574-20231011-0841-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294574/WU294574-20231011-0841-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294574))) The current plot is available as workunit 294574 #rows are 16687 output$download 1... DEBUG renderPlot plotQCs #rows are 16687 output$download 1... output$tic.basepeak <- renderPlot({ #rows are 16687 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 16687 output$download 2... Execution halted