Listening on http://127.0.0.1:41789 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... Warning: The select input "bfabric8-workunit" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 17431 output$tic.basepeak <- renderPlot({ #rows are 17431 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpK9JT6a/rawDiag-644713bbcd00c.pdf generated pdf /tmp/RtmpK9JT6a/rawDiag-644713bbcd00c.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294630, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:26:31", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369251)), modified = "2023-10-12 09:26:31", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369252, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:26:32", createdby = "tobiasko", deletable = "true", filechecksum = "c92a6ea139f558b231e6562a87b00708", junk = "false", modified = "2023-10-12 09:26:32", modifiedby = "tobiasko", name = "WU294630-20231012-0926-rawDiag.pdf", relativepath = "container_33029/workunit_294630/WU294630-20231012-0926-rawDiag.pdf", size = "58566", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294630/WU294630-20231012-0926-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294630/WU294630-20231012-0926-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294630))) The current plot is available as workunit 294630 #rows are 17431 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 17431 output$download 2... ggsave to file /tmp/RtmpK9JT6a/rawDiag-644711b143db9.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpK9JT6a/rawDiag-644711b143db9.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294631, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:26:39", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369251)), modified = "2023-10-12 09:26:39", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369253, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:26:41", createdby = "tobiasko", deletable = "true", filechecksum = "cc7012092c6a38f09daf55856532836f", junk = "false", modified = "2023-10-12 09:26:41", modifiedby = "tobiasko", name = "WU294631-20231012-0926-rawDiag.pdf", relativepath = "container_33029/workunit_294631/WU294631-20231012-0926-rawDiag.pdf", size = "32007", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294631/WU294631-20231012-0926-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294631/WU294631-20231012-0926-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294631))) The current plot is available as workunit 294631 #rows are 17431 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 17431 output$download 2... ggsave to file /tmp/RtmpK9JT6a/rawDiag-6447126a1e24f.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpK9JT6a/rawDiag-6447126a1e24f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294632, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:26:48", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369251)), modified = "2023-10-12 09:26:48", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369254, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:26:50", createdby = "tobiasko", deletable = "true", filechecksum = "dec6954c2a10eea73623cf6a620c1d5c", junk = "false", modified = "2023-10-12 09:26:50", modifiedby = "tobiasko", name = "WU294632-20231012-0926-rawDiag.pdf", relativepath = "container_33029/workunit_294632/WU294632-20231012-0926-rawDiag.pdf", size = "12449", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294632/WU294632-20231012-0926-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294632/WU294632-20231012-0926-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294632))) The current plot is available as workunit 294632 #rows are 17431 output$download 1... Warning: Removed 1 rows containing non-finite values (`stat_smooth()`). #rows are 17431 output$download 2... ggsave to file /tmp/RtmpK9JT6a/rawDiag-6447172da7594.pdf Warning: Removed 1 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpK9JT6a/rawDiag-6447172da7594.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294633, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:26:54", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369251)), modified = "2023-10-12 09:26:54", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369255, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:26:56", createdby = "tobiasko", deletable = "true", filechecksum = "9a794bd77ea24701e1c19581a104e96c", junk = "false", modified = "2023-10-12 09:26:56", modifiedby = "tobiasko", name = "WU294633-20231012-0926-rawDiag.pdf", relativepath = "container_33029/workunit_294633/WU294633-20231012-0926-rawDiag.pdf", size = "35832", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294633/WU294633-20231012-0926-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294633/WU294633-20231012-0926-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294633))) The current plot is available as workunit 294633 #rows are 17431 output$download 1... #rows are 17431 output$download 2... ggsave to file /tmp/RtmpK9JT6a/rawDiag-6447179402250.pdf generated pdf /tmp/RtmpK9JT6a/rawDiag-6447179402250.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294634, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:27:01", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369251)), modified = "2023-10-12 09:27:01", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369256, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:27:02", createdby = "tobiasko", deletable = "true", filechecksum = "8b2b8b60bf91d488195ae6dc27057989", junk = "false", modified = "2023-10-12 09:27:02", modifiedby = "tobiasko", name = "WU294634-20231012-0927-rawDiag.pdf", relativepath = "container_33029/workunit_294634/WU294634-20231012-0927-rawDiag.pdf", size = "74668", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294634/WU294634-20231012-0927-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294634/WU294634-20231012-0927-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294634))) The current plot is available as workunit 294634 #rows are 17431 output$download 1... #rows are 17431 output$download 2... ggsave to file /tmp/RtmpK9JT6a/rawDiag-6447160d2c4ed.pdf generated pdf /tmp/RtmpK9JT6a/rawDiag-6447160d2c4ed.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294635, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:27:38", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369251)), modified = "2023-10-12 09:27:38", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369257, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:27:39", createdby = "tobiasko", deletable = "true", filechecksum = "88cd651eebe783212dc1c3bcbf6b6028", junk = "false", modified = "2023-10-12 09:27:39", modifiedby = "tobiasko", name = "WU294635-20231012-0927-rawDiag.pdf", relativepath = "container_33029/workunit_294635/WU294635-20231012-0927-rawDiag.pdf", size = "5874", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294635/WU294635-20231012-0927-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294635/WU294635-20231012-0927-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294635))) The current plot is available as workunit 294635 #rows are 17431 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 17431 output$download 2... ggsave to file /tmp/RtmpK9JT6a/rawDiag-6447120b7c2d3.pdf generated pdf /tmp/RtmpK9JT6a/rawDiag-6447120b7c2d3.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294636, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:27:50", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369251)), modified = "2023-10-12 09:27:50", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369258, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:27:51", createdby = "tobiasko", deletable = "true", filechecksum = "36f9e424f620c612bd5229f114f015f2", junk = "false", modified = "2023-10-12 09:27:51", modifiedby = "tobiasko", name = "WU294636-20231012-0927-rawDiag.pdf", relativepath = "container_33029/workunit_294636/WU294636-20231012-0927-rawDiag.pdf", size = "9777", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294636/WU294636-20231012-0927-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294636/WU294636-20231012-0927-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294636))) The current plot is available as workunit 294636 #rows are 17431 output$download 1... #rows are 17431 output$download 2... #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_005_autoQC4L_K562.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 43995 output$tic.basepeak <- renderPlot({ #rows are 43995 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpK9JT6a/rawDiag-64471193685bb.pdf generated pdf /tmp/RtmpK9JT6a/rawDiag-64471193685bb.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294640, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:40:58", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_005_autoQC4L_K562.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369267), list(`_classname` = "resource", `_id` = 2369266)), modified = "2023-10-12 09:40:58", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369268, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:41:00", createdby = "tobiasko", deletable = "true", filechecksum = "f3cc0d7c8377ed9a817fb1f9e6150d59", junk = "false", modified = "2023-10-12 09:41:00", modifiedby = "tobiasko", name = "WU294640-20231012-0940-rawDiag.pdf", relativepath = "container_33029/workunit_294640/WU294640-20231012-0940-rawDiag.pdf", size = "98824", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294640/WU294640-20231012-0940-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294640/WU294640-20231012-0940-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294640))) The current plot is available as workunit 294640 #rows are 43995 output$download 1... saving 'login and webservicepassword' ... #rows are 43995 output$download 2... ggsave to file /tmp/RtmpK9JT6a/rawDiag-64471cf90c37.pdf generated pdf /tmp/RtmpK9JT6a/rawDiag-64471cf90c37.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294641, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:41:52", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_005_autoQC4L_K562.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369267), list(`_classname` = "resource", `_id` = 2369266)), modified = "2023-10-12 09:41:52", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369269, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:41:53", createdby = "tobiasko", deletable = "true", filechecksum = "ffc58fee5839ea6c4c1a966c274618f7", junk = "false", modified = "2023-10-12 09:41:53", modifiedby = "tobiasko", name = "WU294641-20231012-0941-rawDiag.pdf", relativepath = "container_33029/workunit_294641/WU294641-20231012-0941-rawDiag.pdf", size = "7465", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294641/WU294641-20231012-0941-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294641/WU294641-20231012-0941-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294641))) The current plot is available as workunit 294641 #rows are 43995 output$download 1... Warning: Removed 9 rows containing non-finite values (`stat_smooth()`). #rows are 43995 output$download 2... ggsave to file /tmp/RtmpK9JT6a/rawDiag-6447148b5dc43.pdf Warning: Removed 9 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpK9JT6a/rawDiag-6447148b5dc43.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294642, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:42:05", createdby = "tobiasko", deletable = "true", description = "input files:\np33029/Proteomics/QEXACTIVE_1/analytic_20231011/20231011_C33029_002_S571885_ExpB_2D_12Y_mIgG_37C_1h.raw\np33029/Proteomics/QEXACTIVE_1/analytic_20231010/20231010_C33029_005_autoQC4L_K562.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2369267), list(`_classname` = "resource", `_id` = 2369266)), modified = "2023-10-12 09:42:05", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2369270, container = list(`_classname` = "order", `_id` = 33029), created = "2023-10-12 09:42:06", createdby = "tobiasko", deletable = "true", filechecksum = "a1188ef4c65c84e0b810483f26b5f138", junk = "false", modified = "2023-10-12 09:42:06", modifiedby = "tobiasko", name = "WU294642-20231012-0942-rawDiag.pdf", relativepath = "container_33029/workunit_294642/WU294642-20231012-0942-rawDiag.pdf", size = "55163", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33029/workunit_294642/WU294642-20231012-0942-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33029/workunit_294642/WU294642-20231012-0942-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294642))) The current plot is available as workunit 294642 #rows are 43995 output$download 1... Execution halted