Listening on http://127.0.0.1:45355 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_022_S574504_BioID-TDP-43-GFP1-9_B_Group_3_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_012_S574503_BioID-TDP-43-GFP1-9_A_Group_3_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_011_S574491_BioID-TDP-43-WT_noDox_A_Control_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_007_S574497_BioID-TDP-43-6M_A_Group_1_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_003_S574500_BioID-TDP-43-RRMm_A_Group_2_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_002_S574498_BioID-TDP-43-6M_B_Group_1_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_004_S574495_BioID-TDP-43-WT_B_WT_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_017_S574492_BioID-TDP-43-WT_noDox_B_Control_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_016_S574493_BioID-TDP-43-WT_noDox_C_Control_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_008_S574505_BioID-TDP-43-GFP1-9_C_Group_3_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_015_S574496_BioID-TDP-43-WT_C_WT_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_020_S574499_BioID-TDP-43-6M_C_Group_1_DIA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_006_S574502_BioID-TDP-43-RRMm_C_Group_2_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_021_S574501_BioID-TDP-43-RRMm_B_Group_2_DIA.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_013_S574494_BioID-TDP-43-WT_A_WT_DIA.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 1368233 output$tic.basepeak <- renderPlot({ #rows are 1368233 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/Rtmp82rdzv/rawDiag-3439a7c4b3afb.pdf generated pdf /tmp/Rtmp82rdzv/rawDiag-3439a7c4b3afb.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294793, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33108), created = "2023-10-16 15:11:12", createdby = "tobiasko", deletable = "true", description = "input files:\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_022_S574504_BioID-TDP-43-GFP1-9_B_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_012_S574503_BioID-TDP-43-GFP1-9_A_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_011_S574491_BioID-TDP-43-WT_noDox_A_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_007_S574497_BioID-TDP-43-6M_A_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_003_S574500_BioID-TDP-43-RRMm_A_Group_2_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_002_S574498_BioID-TDP-43-6M_B_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_004_S574495_BioID-TDP-43-WT_B_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_017_S574492_BioID-TDP-43-WT_noDox_B_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_016_S574493_BioID-TDP-43-WT_noDox_C_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_008_S574505_BioID-TDP-43-GFP1-9_C_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_020_S574499_BioID-TDP-43-6M_C_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_015_S574496_BioID-TDP-43-WT_C_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_021_S574501_BioID-TDP-43-RRMm_B_Group_2_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_013_S574494_BioID-TDP-43-WT_A_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_006_S574502_BioID-TDP-43-RRMm_C_Group_2_DIA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2370315), list(`_classname` = "resource", `_id` = 2370314), list(`_classname` = "resource", `_id` = 2370313), list(`_classname` = "resource", `_id` = 2370312), list(`_classname` = "resource", `_id` = 2370311), list(`_classname` = "resource", `_id` = 2370310), list(`_classname` = "resource", `_id` = 2370309), list(`_classname` = "resource", `_id` = 2370308), list(`_classname` = "resource", `_id` = 2370307), list( `_classname` = "resource", `_id` = 2370306), list(`_classname` = "resource", `_id` = 2370303), list(`_classname` = "resource", `_id` = 2370302), list(`_classname` = "resource", `_id` = 2370301)), modified = "2023-10-16 15:11:12", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2371553, container = list(`_classname` = "order", `_id` = 33108), created = "2023-10-16 15:11:13", createdby = "tobiasko", deletable = "true", filechecksum = "dd619d395c289d3c1ace3db42ca8c6a4", junk = "false", modified = "2023-10-16 15:11:13", modifiedby = "tobiasko", name = "WU294793-20231016-1511-rawDiag.pdf", relativepath = "container_33108/workunit_294793/WU294793-20231016-1511-rawDiag.pdf", size = "246633", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33108/workunit_294793/WU294793-20231016-1511-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33108/workunit_294793/WU294793-20231016-1511-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294793))) The current plot is available as workunit 294793 #rows are 1368233 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 1368233 output$download 2... ggsave to file /tmp/Rtmp82rdzv/rawDiag-3439a71662a77f.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp82rdzv/rawDiag-3439a71662a77f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294794, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33108), created = "2023-10-16 15:11:36", createdby = "tobiasko", deletable = "true", description = "input files:\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_022_S574504_BioID-TDP-43-GFP1-9_B_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_012_S574503_BioID-TDP-43-GFP1-9_A_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_011_S574491_BioID-TDP-43-WT_noDox_A_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_007_S574497_BioID-TDP-43-6M_A_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_003_S574500_BioID-TDP-43-RRMm_A_Group_2_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_002_S574498_BioID-TDP-43-6M_B_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_004_S574495_BioID-TDP-43-WT_B_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_017_S574492_BioID-TDP-43-WT_noDox_B_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_016_S574493_BioID-TDP-43-WT_noDox_C_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_008_S574505_BioID-TDP-43-GFP1-9_C_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_020_S574499_BioID-TDP-43-6M_C_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_015_S574496_BioID-TDP-43-WT_C_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_021_S574501_BioID-TDP-43-RRMm_B_Group_2_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_013_S574494_BioID-TDP-43-WT_A_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_006_S574502_BioID-TDP-43-RRMm_C_Group_2_DIA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2370315), list(`_classname` = "resource", `_id` = 2370314), list(`_classname` = "resource", `_id` = 2370313), list(`_classname` = "resource", `_id` = 2370312), list(`_classname` = "resource", `_id` = 2370311), list(`_classname` = "resource", `_id` = 2370310), list(`_classname` = "resource", `_id` = 2370309), list(`_classname` = "resource", `_id` = 2370308), list(`_classname` = "resource", `_id` = 2370307), list( `_classname` = "resource", `_id` = 2370306), list(`_classname` = "resource", `_id` = 2370303), list(`_classname` = "resource", `_id` = 2370302), list(`_classname` = "resource", `_id` = 2370301)), modified = "2023-10-16 15:11:36", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2371554, container = list(`_classname` = "order", `_id` = 33108), created = "2023-10-16 15:11:37", createdby = "tobiasko", deletable = "true", filechecksum = "99690e2fdac2c1b6c727332da6cda1dd", junk = "false", modified = "2023-10-16 15:11:37", modifiedby = "tobiasko", name = "WU294794-20231016-1511-rawDiag.pdf", relativepath = "container_33108/workunit_294794/WU294794-20231016-1511-rawDiag.pdf", size = "375654", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33108/workunit_294794/WU294794-20231016-1511-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33108/workunit_294794/WU294794-20231016-1511-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294794))) The current plot is available as workunit 294794 #rows are 1368233 output$download 1... #rows are 1368233 output$download 2... ggsave to file /tmp/Rtmp82rdzv/rawDiag-3439a7264dc8eb.pdf generated pdf /tmp/Rtmp82rdzv/rawDiag-3439a7264dc8eb.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294795, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33108), created = "2023-10-16 15:11:54", createdby = "tobiasko", deletable = "true", description = "input files:\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_022_S574504_BioID-TDP-43-GFP1-9_B_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_012_S574503_BioID-TDP-43-GFP1-9_A_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_011_S574491_BioID-TDP-43-WT_noDox_A_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_007_S574497_BioID-TDP-43-6M_A_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_003_S574500_BioID-TDP-43-RRMm_A_Group_2_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_002_S574498_BioID-TDP-43-6M_B_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_004_S574495_BioID-TDP-43-WT_B_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_017_S574492_BioID-TDP-43-WT_noDox_B_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_016_S574493_BioID-TDP-43-WT_noDox_C_Control_DIA.raw\np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_008_S574505_BioID-TDP-43-GFP1-9_C_Group_3_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_020_S574499_BioID-TDP-43-6M_C_Group_1_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_015_S574496_BioID-TDP-43-WT_C_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_021_S574501_BioID-TDP-43-RRMm_B_Group_2_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_013_S574494_BioID-TDP-43-WT_A_WT_DIA.raw \np33108/Proteomics/EXPLORIS_2/analytic_20231013_DIA/20231013_C33108_006_S574502_BioID-TDP-43-RRMm_C_Group_2_DIA.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2370315), list(`_classname` = "resource", `_id` = 2370314), list(`_classname` = "resource", `_id` = 2370313), list(`_classname` = "resource", `_id` = 2370312), list(`_classname` = "resource", `_id` = 2370311), list(`_classname` = "resource", `_id` = 2370310), list(`_classname` = "resource", `_id` = 2370309), list(`_classname` = "resource", `_id` = 2370308), list(`_classname` = "resource", `_id` = 2370307), list( `_classname` = "resource", `_id` = 2370306), list(`_classname` = "resource", `_id` = 2370303), list(`_classname` = "resource", `_id` = 2370302), list(`_classname` = "resource", `_id` = 2370301)), modified = "2023-10-16 15:11:54", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2371555, container = list(`_classname` = "order", `_id` = 33108), created = "2023-10-16 15:11:55", createdby = "tobiasko", deletable = "true", filechecksum = "648cbd2433271a4a95f4f123b5b4310a", junk = "false", modified = "2023-10-16 15:11:55", modifiedby = "tobiasko", name = "WU294795-20231016-1511-rawDiag.pdf", relativepath = "container_33108/workunit_294795/WU294795-20231016-1511-rawDiag.pdf", size = "106184", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33108/workunit_294795/WU294795-20231016-1511-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33108/workunit_294795/WU294795-20231016-1511-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294795))) The current plot is available as workunit 294795 #rows are 1368233 output$download 1... #rows are 1368233 output$download 2... ggsave to file /tmp/Rtmp82rdzv/rawDiag-3439a76a69b767.pdf generated pdf /tmp/Rtmp82rdzv/rawDiag-3439a76a69b767.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294796, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33108), created = "2023-10-16 15:13:14", createdby = "tobiasko", deletable = "true", description = "input 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0.12.22.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2370315), list(`_classname` = "resource", `_id` = 2370314), list(`_classname` = "resource", `_id` = 2370313), list(`_classname` = "resource", `_id` = 2370312), list(`_classname` = "resource", `_id` = 2370311), list(`_classname` = "resource", `_id` = 2370310), list(`_classname` = "resource", `_id` = 2370309), list(`_classname` = "resource", `_id` = 2370308), list(`_classname` = "resource", `_id` = 2370307), list( `_classname` = "resource", `_id` = 2370306), list(`_classname` = "resource", `_id` = 2370303), list(`_classname` = "resource", `_id` = 2370302), list(`_classname` = "resource", `_id` = 2370301)), modified = "2023-10-16 15:13:14", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2371556, container = list(`_classname` = "order", `_id` = 33108), created = "2023-10-16 15:13:16", createdby = "tobiasko", deletable = "true", filechecksum = "404f6038a1f3a5036751ef51d2634994", junk = "false", modified = "2023-10-16 15:13:16", modifiedby = "tobiasko", name = "WU294796-20231016-1513-rawDiag.pdf", relativepath = "container_33108/workunit_294796/WU294796-20231016-1513-rawDiag.pdf", size = "2549133", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33108/workunit_294796/WU294796-20231016-1513-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33108/workunit_294796/WU294796-20231016-1513-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294796))) The current plot is available as workunit 294796 #rows are 1368233 output$download 1... #rows are 1368233 output$download 2... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 1368233 output$download 2... DEBUG renderPlot plotQCs #rows are 1368233 output$download 2... ggsave to file /tmp/Rtmp82rdzv/rawDiag-3439a714b2a7b8.pdf Warning: Error in +: non-numeric argument to binary operator 1: runApp Execution halted