Listening on http://127.0.0.1:41405 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_008_S576364_2-MOLT-4-DHA_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_004_S576363_1-MOLT-4-GC_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_006_S576366_4-BMDC-DHA_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_007_S576368_6-moDC-DHA_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_003_S576365_3-BMDC-GC_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_002_S576367_5-moDC-GC_Group_3.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values #rows are 234198 output$tic.basepeak <- renderPlot({ #rows are 234198 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6fdc96e2c.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6fdc96e2c.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294979, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:55:30", createdby = "tobiasko", deletable = "true", description = "input files:\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_003_S576365_3-BMDC-GC_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_008_S576364_2-MOLT-4-DHA_Group_1.raw\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_004_S576363_1-MOLT-4-GC_Group_1.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_007_S576368_6-moDC-DHA_Group_3.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_006_S576366_4-BMDC-DHA_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_002_S576367_5-moDC-GC_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373653), list(`_classname` = "resource", `_id` = 2373652), list(`_classname` = "resource", `_id` = 2373651), list(`_classname` = "resource", `_id` = 2373650), list(`_classname` = "resource", `_id` = 2373649), list(`_classname` = "resource", `_id` = 2373648)), modified = "2023-10-20 09:55:30", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373655, container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:55:32", createdby = "tobiasko", deletable = "true", filechecksum = "413c425e11a9e5a0e706cd37c2ef8bb9", junk = "false", modified = "2023-10-20 09:55:32", modifiedby = "tobiasko", name = "WU294979-20231020-0955-rawDiag.pdf", relativepath = "container_33130/workunit_294979/WU294979-20231020-0955-rawDiag.pdf", size = "337588", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33130/workunit_294979/WU294979-20231020-0955-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33130/workunit_294979/WU294979-20231020-0955-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294979))) The current plot is available as workunit 294979 #rows are 234198 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 234198 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f3c910828.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f3c910828.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294980, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:55:44", createdby = "tobiasko", deletable = "true", description = "input files:\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_003_S576365_3-BMDC-GC_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_008_S576364_2-MOLT-4-DHA_Group_1.raw\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_004_S576363_1-MOLT-4-GC_Group_1.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_007_S576368_6-moDC-DHA_Group_3.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_006_S576366_4-BMDC-DHA_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_002_S576367_5-moDC-GC_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373653), list(`_classname` = "resource", `_id` = 2373652), list(`_classname` = "resource", `_id` = 2373651), list(`_classname` = "resource", `_id` = 2373650), list(`_classname` = "resource", `_id` = 2373649), list(`_classname` = "resource", `_id` = 2373648)), modified = "2023-10-20 09:55:44", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373656, container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:55:45", createdby = "tobiasko", deletable = "true", filechecksum = "9d3fd0eb45ea14a1317e55ebfdf945ad", junk = "false", modified = "2023-10-20 09:55:45", modifiedby = "tobiasko", name = "WU294980-20231020-0955-rawDiag.pdf", relativepath = "container_33130/workunit_294980/WU294980-20231020-0955-rawDiag.pdf", size = "188667", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33130/workunit_294980/WU294980-20231020-0955-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33130/workunit_294980/WU294980-20231020-0955-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294980))) The current plot is available as workunit 294980 #rows are 234198 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 234198 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f128ab37.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f128ab37.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294981, application = list(`_classname` = "application", `_id` = 19), container = list(`_classname` = "project", `_id` = 2716), created = "2023-10-20 09:56:13", createdby = "tobiasko", deletable = "true", description = "COM=DUBs screen (C:\\ProgramData\\Matrix Science\\Mascot Daemon\\parameters\\ISG15chromex_dGG.par), submitted from Daemon on FGCZ-H-402; TOL=8; TOLU=ppm; ITOL=0.6; ITOLU=Da; MODS=Carbamidomethyl (C); FILE=\\\\fgcz-ms.uzh.ch\\p2716\\Proteomics\\LUMOS_1\\evans_20231018\\mgf__pd21_default\\20231019_016_S578902_4-3_Ub-PA.mgf; USERNAME=mastav; CHARGE=2+ and 3+; IT_MODS=Acetyl (Protein N-term),Deamidated Asn (N),GG (K),Oxidation (M),Phospho (ST); INSTRUMENT=Lumos HCD; USERID=1872;", exportable = "false", modified = "2023-10-20 09:56:13", modifiedby = "tobiasko", name = "DUBs screen (C:\\ProgramData\\Matrix Science\\Mascot Daemon\\parameters\\ISG15chromex_dGG.par), submitted from Daemon on FGCZ-H-402; F304392.dat", status = "PENDING", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373657, container = list(`_classname` = "project", `_id` = 2716), created = "2023-10-20 09:56:14", createdby = "tobiasko", deletable = "true", filechecksum = "2fb3a70754644a3967ead8cfc569e34f", junk = "false", modified = "2023-10-20 09:56:14", modifiedby = "tobiasko", name = "WU294981-20231020-0956-rawDiag.pdf", relativepath = "container_2716/workunit_294981/WU294981-20231020-0956-rawDiag.pdf", size = "347077", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_2716/workunit_294981/WU294981-20231020-0956-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_2716/workunit_294981/WU294981-20231020-0956-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294981))) The current plot is available as workunit 294981 #rows are 234198 output$download 1... #rows are 234198 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f5e613014.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f5e613014.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294982, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:56:23", createdby = "tobiasko", deletable = "true", description = "input files:\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_003_S576365_3-BMDC-GC_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_008_S576364_2-MOLT-4-DHA_Group_1.raw\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_004_S576363_1-MOLT-4-GC_Group_1.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_007_S576368_6-moDC-DHA_Group_3.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_006_S576366_4-BMDC-DHA_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_002_S576367_5-moDC-GC_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373653), list(`_classname` = "resource", `_id` = 2373652), list(`_classname` = "resource", `_id` = 2373651), list(`_classname` = "resource", `_id` = 2373650), list(`_classname` = "resource", `_id` = 2373649), list(`_classname` = "resource", `_id` = 2373648)), modified = "2023-10-20 09:56:23", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373658, container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:56:24", createdby = "tobiasko", deletable = "true", filechecksum = "25b37651b93a51571df9d9ae61ae0b2c", junk = "false", modified = "2023-10-20 09:56:24", modifiedby = "tobiasko", name = "WU294982-20231020-0956-rawDiag.pdf", relativepath = "container_33130/workunit_294982/WU294982-20231020-0956-rawDiag.pdf", size = "185505", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33130/workunit_294982/WU294982-20231020-0956-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33130/workunit_294982/WU294982-20231020-0956-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294982))) The current plot is available as workunit 294982 #rows are 234198 output$download 1... #rows are 234198 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f7c56a99c.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f7c56a99c.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294983, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:56:51", createdby = "tobiasko", deletable = "true", description = "input files:\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_003_S576365_3-BMDC-GC_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_008_S576364_2-MOLT-4-DHA_Group_1.raw\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_004_S576363_1-MOLT-4-GC_Group_1.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_007_S576368_6-moDC-DHA_Group_3.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_006_S576366_4-BMDC-DHA_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_002_S576367_5-moDC-GC_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373653), list(`_classname` = "resource", `_id` = 2373652), list(`_classname` = "resource", `_id` = 2373651), list(`_classname` = "resource", `_id` = 2373650), list(`_classname` = "resource", `_id` = 2373649), list(`_classname` = "resource", `_id` = 2373648)), modified = "2023-10-20 09:56:51", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373659, container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:56:53", createdby = "tobiasko", deletable = "true", filechecksum = "868952e896a8370bba6841e43005f94a", junk = "false", modified = "2023-10-20 09:56:53", modifiedby = "tobiasko", name = "WU294983-20231020-0956-rawDiag.pdf", relativepath = "container_33130/workunit_294983/WU294983-20231020-0956-rawDiag.pdf", size = "703001", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33130/workunit_294983/WU294983-20231020-0956-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33130/workunit_294983/WU294983-20231020-0956-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294983))) The current plot is available as workunit 294983 #rows are 234198 output$download 1... #rows are 234198 output$download 2... #rows are 234198 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f5f4d4c6f.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f5f4d4c6f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294984, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:57:11", createdby = "tobiasko", deletable = "true", description = "input files:\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_003_S576365_3-BMDC-GC_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_008_S576364_2-MOLT-4-DHA_Group_1.raw\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_004_S576363_1-MOLT-4-GC_Group_1.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_007_S576368_6-moDC-DHA_Group_3.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_006_S576366_4-BMDC-DHA_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_002_S576367_5-moDC-GC_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373653), list(`_classname` = "resource", `_id` = 2373652), list(`_classname` = "resource", `_id` = 2373651), list(`_classname` = "resource", `_id` = 2373650), list(`_classname` = "resource", `_id` = 2373649), list(`_classname` = "resource", `_id` = 2373648)), modified = "2023-10-20 09:57:11", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373660, container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:57:12", createdby = "tobiasko", deletable = "true", filechecksum = "f0f5faf37fb930501815fecd2ab1408f", junk = "false", modified = "2023-10-20 09:57:12", modifiedby = "tobiasko", name = "WU294984-20231020-0957-rawDiag.pdf", relativepath = "container_33130/workunit_294984/WU294984-20231020-0957-rawDiag.pdf", size = "8490", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33130/workunit_294984/WU294984-20231020-0957-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33130/workunit_294984/WU294984-20231020-0957-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294984))) The current plot is available as workunit 294984 #rows are 234198 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 234198 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f7ccf901d.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f7ccf901d.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294985, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:57:26", createdby = "tobiasko", deletable = "true", description = "input files:\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_003_S576365_3-BMDC-GC_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_008_S576364_2-MOLT-4-DHA_Group_1.raw\np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_004_S576363_1-MOLT-4-GC_Group_1.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_007_S576368_6-moDC-DHA_Group_3.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_006_S576366_4-BMDC-DHA_Group_2.raw \np33130/Proteomics/LUMOS_2/analytic_20231018/20231018_C33130_002_S576367_5-moDC-GC_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373653), list(`_classname` = "resource", `_id` = 2373652), list(`_classname` = "resource", `_id` = 2373651), list(`_classname` = "resource", `_id` = 2373650), list(`_classname` = "resource", `_id` = 2373649), list(`_classname` = "resource", `_id` = 2373648)), modified = "2023-10-20 09:57:26", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373661, container = list(`_classname` = "order", `_id` = 33130), created = "2023-10-20 09:57:27", createdby = "tobiasko", deletable = "true", filechecksum = "b386ced0a0b92bf446aa6bd75a5ca5af", junk = "false", modified = "2023-10-20 09:57:27", modifiedby = "tobiasko", name = "WU294985-20231020-0957-rawDiag.pdf", relativepath = "container_33130/workunit_294985/WU294985-20231020-0957-rawDiag.pdf", size = "76197", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33130/workunit_294985/WU294985-20231020-0957-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33130/workunit_294985/WU294985-20231020-0957-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294985))) The current plot is available as workunit 294985 #rows are 234198 output$download 1... DEBUG renderPlot plotQCs #rows are 234198 output$download 1... output$tic.basepeak <- renderPlot({ #rows are 234198 output$download 2... output$tic.basepeak <- renderPlot({ executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_002_S577598_pos_TFAMoplex_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_004_S577597_neg_dead_PLC_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_003_S577596_neg_normal_plasmid_Group_1.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values #rows are 139208 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 139208 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f2e056417.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f2e056417.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294991, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:12:07", createdby = "tobiasko", deletable = "true", description = "input files:\np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_004_S577597_neg_dead_PLC_Group_2.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_002_S577598_pos_TFAMoplex_Group_3.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_003_S577596_neg_normal_plasmid_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373685), list(`_classname` = "resource", `_id` = 2373684), list(`_classname` = "resource", `_id` = 2373683)), modified = "2023-10-20 10:12:07", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373686, container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:12:09", createdby = "tobiasko", deletable = "true", filechecksum = "e7a36d7992804cd237043fa8195b9b73", junk = "false", modified = "2023-10-20 10:12:09", modifiedby = "tobiasko", name = "WU294991-20231020-1012-rawDiag.pdf", relativepath = "container_33149/workunit_294991/WU294991-20231020-1012-rawDiag.pdf", size = "147897", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33149/workunit_294991/WU294991-20231020-1012-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33149/workunit_294991/WU294991-20231020-1012-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294991))) The current plot is available as workunit 294991 #rows are 139208 output$download 1... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 139208 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f73b1c4d.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f73b1c4d.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294992, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:12:31", createdby = "tobiasko", deletable = "true", description = "input files:\np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_004_S577597_neg_dead_PLC_Group_2.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_002_S577598_pos_TFAMoplex_Group_3.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_003_S577596_neg_normal_plasmid_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373685), list(`_classname` = "resource", `_id` = 2373684), list(`_classname` = "resource", `_id` = 2373683)), modified = "2023-10-20 10:12:31", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373687, container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:12:32", createdby = "tobiasko", deletable = "true", filechecksum = "ff58be7b7046ab6e96ae0a99d4c36921", junk = "false", modified = "2023-10-20 10:12:32", modifiedby = "tobiasko", name = "WU294992-20231020-1012-rawDiag.pdf", relativepath = "container_33149/workunit_294992/WU294992-20231020-1012-rawDiag.pdf", size = "99261", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33149/workunit_294992/WU294992-20231020-1012-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33149/workunit_294992/WU294992-20231020-1012-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294992))) The current plot is available as workunit 294992 #rows are 139208 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 139208 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f15048a79.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f15048a79.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294993, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:12:43", createdby = "tobiasko", deletable = "true", description = "input files:\np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_004_S577597_neg_dead_PLC_Group_2.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_002_S577598_pos_TFAMoplex_Group_3.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_003_S577596_neg_normal_plasmid_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373685), list(`_classname` = "resource", `_id` = 2373684), list(`_classname` = "resource", `_id` = 2373683)), modified = "2023-10-20 10:12:43", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373688, container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:12:44", createdby = "tobiasko", deletable = "true", filechecksum = "02f266a0207737ce11acdd470eac0beb", junk = "false", modified = "2023-10-20 10:12:44", modifiedby = "tobiasko", name = "WU294993-20231020-1012-rawDiag.pdf", relativepath = "container_33149/workunit_294993/WU294993-20231020-1012-rawDiag.pdf", size = "87698", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33149/workunit_294993/WU294993-20231020-1012-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33149/workunit_294993/WU294993-20231020-1012-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294993))) The current plot is available as workunit 294993 #rows are 139208 output$download 1... #rows are 139208 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f519592a1.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f519592a1.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294994, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:13:03", createdby = "tobiasko", deletable = "true", description = "input files:\np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_004_S577597_neg_dead_PLC_Group_2.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_002_S577598_pos_TFAMoplex_Group_3.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_003_S577596_neg_normal_plasmid_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373685), list(`_classname` = "resource", `_id` = 2373684), list(`_classname` = "resource", `_id` = 2373683)), modified = "2023-10-20 10:13:03", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373689, container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:13:04", createdby = "tobiasko", deletable = "true", filechecksum = "81cdaf1af25df3f8a3b67ac085076441", junk = "false", modified = "2023-10-20 10:13:04", modifiedby = "tobiasko", name = "WU294994-20231020-1013-rawDiag.pdf", relativepath = "container_33149/workunit_294994/WU294994-20231020-1013-rawDiag.pdf", size = "76134", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33149/workunit_294994/WU294994-20231020-1013-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33149/workunit_294994/WU294994-20231020-1013-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294994))) The current plot is available as workunit 294994 #rows are 139208 output$download 1... #rows are 139208 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f52be3dd9.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f52be3dd9.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294995, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:13:25", createdby = "tobiasko", deletable = "true", description = "input files:\np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_004_S577597_neg_dead_PLC_Group_2.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_002_S577598_pos_TFAMoplex_Group_3.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_003_S577596_neg_normal_plasmid_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373685), list(`_classname` = "resource", `_id` = 2373684), list(`_classname` = "resource", `_id` = 2373683)), modified = "2023-10-20 10:13:25", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373690, container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:13:27", createdby = "tobiasko", deletable = "true", filechecksum = "2bd8a1eb806078fe6636c62aae0fe13b", junk = "false", modified = "2023-10-20 10:13:27", modifiedby = "tobiasko", name = "WU294995-20231020-1013-rawDiag.pdf", relativepath = "container_33149/workunit_294995/WU294995-20231020-1013-rawDiag.pdf", size = "393071", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33149/workunit_294995/WU294995-20231020-1013-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33149/workunit_294995/WU294995-20231020-1013-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294995))) The current plot is available as workunit 294995 #rows are 139208 output$download 1... #rows are 139208 output$download 2... #rows are 139208 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f512fbf5c.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f512fbf5c.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294996, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:13:41", createdby = "tobiasko", deletable = "true", description = "input files:\np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_004_S577597_neg_dead_PLC_Group_2.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_002_S577598_pos_TFAMoplex_Group_3.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_003_S577596_neg_normal_plasmid_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373685), list(`_classname` = "resource", `_id` = 2373684), list(`_classname` = "resource", `_id` = 2373683)), modified = "2023-10-20 10:13:41", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373691, container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:13:42", createdby = "tobiasko", deletable = "true", filechecksum = "83367925145118db99e18026da7a3967", junk = "false", modified = "2023-10-20 10:13:42", modifiedby = "tobiasko", name = "WU294996-20231020-1013-rawDiag.pdf", relativepath = "container_33149/workunit_294996/WU294996-20231020-1013-rawDiag.pdf", size = "6594", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33149/workunit_294996/WU294996-20231020-1013-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33149/workunit_294996/WU294996-20231020-1013-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294996))) The current plot is available as workunit 294996 #rows are 139208 output$download 1... Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 139208 output$download 2... ggsave to file /tmp/Rtmp467WIs/rawDiag-210a6f26a93227.pdf generated pdf /tmp/Rtmp467WIs/rawDiag-210a6f26a93227.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 294997, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:13:54", createdby = "tobiasko", deletable = "true", description = "input files:\np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_004_S577597_neg_dead_PLC_Group_2.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_002_S577598_pos_TFAMoplex_Group_3.raw \np33149/Proteomics/LUMOS_2/analytic_20231018/20231018_C33149_003_S577596_neg_normal_plasmid_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2373685), list(`_classname` = "resource", `_id` = 2373684), list(`_classname` = "resource", `_id` = 2373683)), modified = "2023-10-20 10:13:54", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE", updatable = "true"))list(list(`_classname` = "resource", `_id` = 2373692, container = list(`_classname` = "order", `_id` = 33149), created = "2023-10-20 10:13:55", createdby = "tobiasko", deletable = "true", filechecksum = "9a7f62f0310f0c537f4caf5e797cb6af", junk = "false", modified = "2023-10-20 10:13:55", modifiedby = "tobiasko", name = "WU294997-20231020-1013-rawDiag.pdf", relativepath = "container_33149/workunit_294997/WU294997-20231020-1013-rawDiag.pdf", size = "20739", status = "available", storage = list(`_classname` = "storage", `_id` = 10), updatable = "true", uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33149/workunit_294997/WU294997-20231020-1013-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33149/workunit_294997/WU294997-20231020-1013-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 294997))) The current plot is available as workunit 294997 #rows are 139208 output$download 1... DEBUG renderPlot plotQCs #rows are 139208 output$download 1... saving 'login and webservicepassword' ... Execution halted