Listening on http://127.0.0.1:43513
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: protViz
Loading required package: rawDiag
Loading required package: parallel
Loading required package: tidyr
Loading required package: rmarkdown
Loading required package: base64enc
Loading required package: ggplot2
Loading required package: lattice
Loading required package: PKI



#rows are 0
/scratch/cpanse/



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
bfabricConnectionWorking TRUE
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/FUSION_2/algome_20231012_training_module3_DIA/20231012_021_S427187_Glu3_Group_1_DIA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/FUSION_2/algome_20231012_training_module3_DIA/20231012_022_S427188_Glu4_Group_1_DIA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/FUSION_2/algome_20231012_training_module3_DIA/20231012_017_S427192_GE4_Group_2_DIA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/FUSION_2/algome_20231012_training_module3_DIA/20231012_019_S427186_Glu2_Group_1_DIA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/FUSION_2/algome_20231012_training_module3_DIA/20231012_020_S427190_GE2_Group_2_DIA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/FUSION_2/algome_20231012_training_module3_DIA/20231012_016_S427191_GE3_Group_2_DIA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/FUSION_2/algome_20231012_training_module3_DIA/20231012_015_S427185_Glu1_Group_1_DIA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/FUSION_2/algome_20231012_training_module3_DIA/20231012_014_S427189_GE1_Group_2_DIA.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
#rows are 864435
output$tic.basepeak <- renderPlot({
#rows are 864435
output$download 2...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
output$scan.frequency <- renderPlot
Warning: Removed 232 rows containing missing values (`geom_line()`).
#rows are 864435
output$download 2...
#rows are 864435
output$download 2...
Warning in max(res$n) : no non-missing arguments to max; returning -Inf
#rows are 864435
output$download 2...
#rows are 864435
output$download 2...
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
#rows are 864435
output$download 2...
#rows are 864435
output$download 2...
#rows are 864435
output$download 2...
#rows are 864435
output$download 2...
output$tic.basepeak <- renderPlot({
#rows are 864435
output$download 2...



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning: Error in .read: B-Fabric errorreport: Invalid login: only admins, application managers and feeders can use web services. HEINZMANN
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login: only admins, application managers and feeders can use web services. HEINZMANN
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login: only admins, application managers and feeders can use web services. HEINZMANN
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login: only admins, application managers and feeders can use web services. HEINZMANN
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric8-employee
    1: runApp
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
#rows are 
Warning: Error in if: argument is of length zero
  97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#879]
  96: func
  83: renderFunc
  82: output$rawDataStatus
   1: runApp
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_013_S583776_SN2_wt_2_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_007_S583772_SN2_RRP12_2_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_009_S583777_SN2_wt_3_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_018_S583771_SN2_RRP12_1_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_005_S583785_SN3_wt_3_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_020_S583784_SN3_wt_2_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_019_S583775_SN2_wt_1_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_004_S583773_SN2_RRP12_3_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_021_S583782_SN3_RRP12_4_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_002_S583778_SN2_wt_4_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_008_S583781_SN3_RRP12_3_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_010_S583786_SN3_wt_4_Group_4.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_015_S583783_SN3_wt_1_Group_4.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_016_S583774_SN2_RRP12_4_Group_1.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_003_S583779_SN3_RRP12_1_Group_3.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_014_S583780_SN3_RRP12_2_Group_3.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
#rows are 858617
output$tic.basepeak <- renderPlot({
#rows are 858617
output$download 2...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
DEBUG queryMass
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with `aes()`.
ℹ See also `vignette("ggplot2-in-packages")` for more information.
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
#rows are 858617
output$download 2...
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning in mclapply(rf, function(file) { :
  all scheduled cores encountered errors in user code
Warning: Error in : All inputs to rbind.fill must be data.frames
  123: stop
  122: plyr::rbind.fill
  121: <reactive:rawXICAUCData> [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#424]
  105: rawXICAUCData
  104: exprFunc [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#860]
  103: widgetFunc
  102: ::
htmlwidgets
shinyRenderWidget
  101: func
   88: renderFunc
   87: renderFunc
   83: renderFunc
   82: output$tableXICAUC
    1: runApp
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning: Error in <Anonymous>: 'data' must be 2-dimensional (e.g. data frame or matrix)
  107: stop
  106: <Anonymous>
  104: processWidget
  103: widgetFunc
  102: ::
htmlwidgets
shinyRenderWidget
  101: func
   88: renderFunc
   87: renderFunc
   83: renderFunc
   82: output$tableInfo
    1: runApp
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
output$tic.basepeak <- renderPlot({
#rows are 858617
output$download 2...
output$scan.frequency <- renderPlot
Warning: Removed 464 rows containing missing values (`geom_line()`).
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_008_S583781_SN3_RRP12_3_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_009_S583777_SN2_wt_3_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_010_S583786_SN3_wt_4_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_004_S583773_SN2_RRP12_3_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_005_S583785_SN3_wt_3_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_019_S583775_SN2_wt_1_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_020_S583784_SN3_wt_2_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_021_S583782_SN3_RRP12_4_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_018_S583771_SN2_RRP12_1_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_013_S583776_SN2_wt_2_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_007_S583772_SN2_RRP12_2_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_002_S583778_SN2_wt_4_Group_2.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_016_S583774_SN2_RRP12_4_Group_1.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_015_S583783_SN3_wt_1_Group_4.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_003_S583779_SN3_RRP12_1_Group_3.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_014_S583780_SN3_RRP12_2_Group_3.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
DEBUG renderPlot
plotQCs
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning in mclapply(rf, function(file) { :
  all scheduled cores encountered errors in user code
Warning: Error in : All inputs to rbind.fill must be data.frames
  188: stop
  187: plyr::rbind.fill
  186: <reactive:rawXICData> [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#513]
  184: .func
  181: contextFunc
  180: env$runWith
  173: ctx$run
  172: self$.updateValue
  170: rawXICData
  168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#841]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xic
    1: runApp
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
#rows are 858617
output$download 2...
output$tic.basepeak <- renderPlot({
#rows are 858617
output$download 2...



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_008_S583781_SN3_RRP12_3_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_004_S583773_SN2_RRP12_3_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_009_S583777_SN2_wt_3_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_010_S583786_SN3_wt_4_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_005_S583785_SN3_wt_3_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_019_S583775_SN2_wt_1_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_020_S583784_SN3_wt_2_Group_4.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_021_S583782_SN3_RRP12_4_Group_3.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_018_S583771_SN2_RRP12_1_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_013_S583776_SN2_wt_2_Group_2.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_007_S583772_SN2_RRP12_2_Group_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_002_S583778_SN2_wt_4_Group_2.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_016_S583774_SN2_RRP12_4_Group_1.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_015_S583783_SN3_wt_1_Group_4.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_003_S583779_SN3_RRP12_1_Group_3.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33276/Proteomics/LUMOS_1/analytic_20231103/20231103_014_S583780_SN3_RRP12_2_Group_3.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
#rows are 858617
output$tic.basepeak <- renderPlot({
#rows are 858617
output$download 2...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc29fd81db.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc29fd81db.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295665, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33276), created = "2023-11-06 10:21:20", createdby = "heinzmann", description = "input files:\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_018_S583771_SN2_RRP12_1_Group_1.raw\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_007_S583772_SN2_RRP12_2_Group_1.raw\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_004_S583773_SN2_RRP12_3_Group_1.raw\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_016_S583774_SN2_RRP12_4_Group_1.raw\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_019_S583775_SN2_wt_1_Group_2.raw \np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_013_S583776_SN2_wt_2_Group_2.raw \np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_009_S583777_SN2_wt_3_Group_2.raw \np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_002_S583778_SN2_wt_4_Group_2.raw \np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_003_S583779_SN3_RRP12_1_Group_3.raw\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_014_S583780_SN3_RRP12_2_Group_3.raw\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_008_S583781_SN3_RRP12_3_Group_3.raw\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_021_S583782_SN3_RRP12_4_Group_3.raw\np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_015_S583783_SN3_wt_1_Group_4.raw \np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_020_S583784_SN3_wt_2_Group_4.raw \np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_005_S583785_SN3_wt_3_Group_4.raw \np33276/Proteomics/LUMOS_1/analytic_20231103/20231103_010_S583786_SN3_wt_4_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", modified = "2023-11-06 10:21:20", modifiedby = "heinzmann", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2385478, container = list(`_classname` = "order", `_id` = 33276), created = "2023-11-06 10:21:22", createdby = "heinzmann", filechecksum = "e94c4ebfa54887eb28832fffb7523916", junk = "false", modified = "2023-11-06 10:21:22", modifiedby = "heinzmann", name = "WU295665-20231106-1021-rawDiag.pdf", relativepath = "container_33276/workunit_295665/WU295665-20231106-1021-rawDiag.pdf", size = "2361150", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33276/workunit_295665/WU295665-20231106-1021-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33276/workunit_295665/WU295665-20231106-1021-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295665)))
The current plot is available as workunit 295665
#rows are 858617
output$download 1...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/LUMOS_1/baytekbarbini_20220207_training/20220207_002_S361652_MIX_2_Group_2_Method_1.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p26109/Proteomics/LUMOS_1/baytekbarbini_20220207_training/20220207_010_S361652_MIX_2_Group_2_Method_1.raw qc ...
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMCorrectionppm to LMCorrection
copied AGC to AGCMode
calculated PrescanMode values
#rows are 128938
output$tic.basepeak <- renderPlot({
#rows are 128938
output$download 2...
saving 'login and webservicepassword' ...



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE



#rows are 0
/scratch/cpanse/
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE



#rows are 0
/scratch/cpanse/


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_003_S585870_Ctrl_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_002_S585871_H2O2_H2O2.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 51925
output$tic.basepeak <- renderPlot({
#rows are 51925
output$download 2...
saving 'login and webservicepassword' ...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc3a1a5105.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc3a1a5105.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295712, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:28:20", createdby = "tobiasko", description = "input files:\np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_002_S585871_H2O2_H2O2.raw \np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_003_S585870_Ctrl_Control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2385730), list(`_classname` = "resource", `_id` = 2385729)), modified = "2023-11-07 12:28:20", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2385898, container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:28:21", createdby = "tobiasko", filechecksum = "0c4f1dfc9deb611a221f1a53a5ceb32b", junk = "false", modified = "2023-11-07 12:28:21", modifiedby = "tobiasko", name = "WU295712-20231107-1228-rawDiag.pdf", relativepath = "container_33309/workunit_295712/WU295712-20231107-1228-rawDiag.pdf", size = "79752", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33309/workunit_295712/WU295712-20231107-1228-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33309/workunit_295712/WU295712-20231107-1228-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295712)))
The current plot is available as workunit 295712
#rows are 51925
output$download 1...
saving 'login and webservicepassword' ...
output$scan.frequency <- renderPlot
Warning: Removed 29 rows containing missing values (`geom_line()`).
#rows are 51925
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc4ef85235.pdf
Warning: Removed 29 rows containing missing values (`geom_line()`).
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc4ef85235.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295713, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:28:44", createdby = "tobiasko", description = "input files:\np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_002_S585871_H2O2_H2O2.raw \np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_003_S585870_Ctrl_Control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2385730), list(`_classname` = "resource", `_id` = 2385729)), modified = "2023-11-07 12:28:44", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2385899, container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:28:45", createdby = "tobiasko", filechecksum = "a82cdb2bf6a478a1fc85c9f23bb86c96", junk = "false", modified = "2023-11-07 12:28:45", modifiedby = "tobiasko", name = "WU295713-20231107-1228-rawDiag.pdf", relativepath = "container_33309/workunit_295713/WU295713-20231107-1228-rawDiag.pdf", size = "66532", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33309/workunit_295713/WU295713-20231107-1228-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33309/workunit_295713/WU295713-20231107-1228-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295713)))
The current plot is available as workunit 295713
#rows are 51925
output$download 1...
`geom_smooth()` using formula = 'y ~ x'
#rows are 51925
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc6e8bfdd.pdf
`geom_smooth()` using formula = 'y ~ x'
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc6e8bfdd.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295714, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:28:58", createdby = "tobiasko", description = "input files:\np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_002_S585871_H2O2_H2O2.raw \np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_003_S585870_Ctrl_Control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2385730), list(`_classname` = "resource", `_id` = 2385729)), modified = "2023-11-07 12:28:58", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2385900, container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:28:59", createdby = "tobiasko", filechecksum = "0a5780c1d3a45df122dddfa003dab830", junk = "false", modified = "2023-11-07 12:28:59", modifiedby = "tobiasko", name = "WU295714-20231107-1228-rawDiag.pdf", relativepath = "container_33309/workunit_295714/WU295714-20231107-1228-rawDiag.pdf", size = "40822", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33309/workunit_295714/WU295714-20231107-1228-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33309/workunit_295714/WU295714-20231107-1228-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295714)))
The current plot is available as workunit 295714
#rows are 51925
output$download 1...
#rows are 51925
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc73459543.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc73459543.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295715, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:29:08", createdby = "tobiasko", description = "input files:\np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_002_S585871_H2O2_H2O2.raw \np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_003_S585870_Ctrl_Control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2385730), list(`_classname` = "resource", `_id` = 2385729)), modified = "2023-11-07 12:29:08", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2385901, container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:29:09", createdby = "tobiasko", filechecksum = "f9308adbe6b38b440fdc40bb5a3153f6", junk = "false", modified = "2023-11-07 12:29:09", modifiedby = "tobiasko", name = "WU295715-20231107-1229-rawDiag.pdf", relativepath = "container_33309/workunit_295715/WU295715-20231107-1229-rawDiag.pdf", size = "46870", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33309/workunit_295715/WU295715-20231107-1229-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33309/workunit_295715/WU295715-20231107-1229-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295715)))
The current plot is available as workunit 295715
#rows are 51925
output$download 1...
#rows are 51925
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc1dd4e7fe.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc1dd4e7fe.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295716, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:29:17", createdby = "tobiasko", description = "input files:\np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_002_S585871_H2O2_H2O2.raw \np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_003_S585870_Ctrl_Control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2385730), list(`_classname` = "resource", `_id` = 2385729)), modified = "2023-11-07 12:29:17", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2385902, container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:29:18", createdby = "tobiasko", filechecksum = "c02f57530f1df90383d6810707aa2cf9", junk = "false", modified = "2023-11-07 12:29:18", modifiedby = "tobiasko", name = "WU295716-20231107-1229-rawDiag.pdf", relativepath = "container_33309/workunit_295716/WU295716-20231107-1229-rawDiag.pdf", size = "217542", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33309/workunit_295716/WU295716-20231107-1229-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33309/workunit_295716/WU295716-20231107-1229-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295716)))
The current plot is available as workunit 295716
#rows are 51925
output$download 1...
#rows are 51925
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc7bc1c038.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc7bc1c038.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295717, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:29:33", createdby = "tobiasko", description = "input files:\np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_002_S585871_H2O2_H2O2.raw \np33309/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33309_003_S585870_Ctrl_Control.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2385730), list(`_classname` = "resource", `_id` = 2385729)), modified = "2023-11-07 12:29:33", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2385903, container = list(`_classname` = "order", `_id` = 33309), created = "2023-11-07 12:29:34", createdby = "tobiasko", filechecksum = "1e9be355d97361fd18b8a3448c5e9ae7", junk = "false", modified = "2023-11-07 12:29:34", modifiedby = "tobiasko", name = "WU295717-20231107-1229-rawDiag.pdf", relativepath = "container_33309/workunit_295717/WU295717-20231107-1229-rawDiag.pdf", size = "6477", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33309/workunit_295717/WU295717-20231107-1229-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33309/workunit_295717/WU295717-20231107-1229-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295717)))
The current plot is available as workunit 295717
#rows are 51925
output$download 1...
DEBUG queryMass
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
#rows are 51925
output$download 2...
DEBUG renderPlot
plotQCs
#rows are 51925
output$download 2...
#rows are 51925
output$download 2...
DEBUG renderPlot
plotQCs
#rows are 51925
output$download 2...
#rows are 51925
output$download 2...
output$tic.basepeak <- renderPlot({
#rows are 51925
output$download 2...
output$tic.basepeak <- renderPlot({
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_004_S560348_SFM_withH2O2___H2O2_DDA.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32833/Proteomics/EXPLORIS_2/analytic_20230915/20230915_C32833_002_S560347_Ctrl_noH2O2_Control_DDA.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 70995
output$download 2...
output$tic.basepeak <- renderPlot({
#rows are 70995
output$download 2...


#rows are 0
saving 'login and webservicepassword' ...
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_007_S583636_TDPwt_1_basal.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_010_S583628_L_TDPmNLS_1_mNLS_L.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_012_S583635_S_TDPmNLS_2_mNLS_S.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_002_S583634_S_TDPmNLS_1_mNLS_S.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_015_S583626_L_TDPwt_1_WT_L.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_013_S583629_L_TDPmNLS_2_mNLS_L.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_004_S583637_TDPwt_2_basal.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_005_S583632_S_TDPwt_1_WT_S.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_008_S583631_L_GFP_2_Control.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_009_S583627_L_TDPwt_2_WT_L.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_003_S583633_S_TDPwt_2_WT_S.raw qc ...
executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_014_S583630_L_GFP_1_Control.raw qc ...
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed AGCPSMode to PrescanMode
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode
NA values replaced in MasterScanNumber 
renamed LMmZCorrectionppm to LMCorrection
renamed AGCPSMode to PrescanMode
#rows are 332755
output$tic.basepeak <- renderPlot({
#rows are 332755
output$download 2...
saving 'login and webservicepassword' ...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc18e1a87d.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc18e1a87d.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295744, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:15:13", createdby = "tobiasko", description = "input files:\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_007_S583636_TDPwt_1_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_010_S583628_L_TDPmNLS_1_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_012_S583635_S_TDPmNLS_2_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_002_S583634_S_TDPmNLS_1_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_015_S583626_L_TDPwt_1_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_013_S583629_L_TDPmNLS_2_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_004_S583637_TDPwt_2_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_005_S583632_S_TDPwt_1_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_008_S583631_L_GFP_2_Control.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_009_S583627_L_TDPwt_2_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_003_S583633_S_TDPwt_2_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_014_S583630_L_GFP_1_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2386603), list(`_classname` = "resource", `_id` = 2386602), list(`_classname` = "resource", `_id` = 2386601), list(`_classname` = "resource", `_id` = 2386600), list(`_classname` = "resource", `_id` = 2386599), list(`_classname` = "resource", `_id` = 2386598), list(`_classname` = "resource", `_id` = 2386597), list(`_classname` = "resource", `_id` = 2386596), list(`_classname` = "resource", `_id` = 2386595), list(
        `_classname` = "resource", `_id` = 2386594), list(`_classname` = "resource", `_id` = 2386593), list(`_classname` = "resource", `_id` = 2386592)), modified = "2023-11-07 17:15:13", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2386604, container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:15:14", createdby = "tobiasko", filechecksum = "044cb3ece4ba4e20826f7d98411dc0ca", junk = "false", modified = "2023-11-07 17:15:14", modifiedby = "tobiasko", name = "WU295744-20231107-1715-rawDiag.pdf", relativepath = "container_33274/workunit_295744/WU295744-20231107-1715-rawDiag.pdf", size = "341793", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33274/workunit_295744/WU295744-20231107-1715-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33274/workunit_295744/WU295744-20231107-1715-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295744)))
The current plot is available as workunit 295744
#rows are 332755
output$download 1...
saving 'login and webservicepassword' ...
output$scan.frequency <- renderPlot
Warning: Removed 29 rows containing missing values (`geom_line()`).
#rows are 332755
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc1a379e8a.pdf
Warning: Removed 29 rows containing missing values (`geom_line()`).
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc1a379e8a.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295745, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:15:37", createdby = "tobiasko", description = "input files:\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_007_S583636_TDPwt_1_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_010_S583628_L_TDPmNLS_1_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_012_S583635_S_TDPmNLS_2_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_002_S583634_S_TDPmNLS_1_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_015_S583626_L_TDPwt_1_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_013_S583629_L_TDPmNLS_2_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_004_S583637_TDPwt_2_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_005_S583632_S_TDPwt_1_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_008_S583631_L_GFP_2_Control.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_009_S583627_L_TDPwt_2_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_003_S583633_S_TDPwt_2_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_014_S583630_L_GFP_1_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2386603), list(`_classname` = "resource", `_id` = 2386602), list(`_classname` = "resource", `_id` = 2386601), list(`_classname` = "resource", `_id` = 2386600), list(`_classname` = "resource", `_id` = 2386599), list(`_classname` = "resource", `_id` = 2386598), list(`_classname` = "resource", `_id` = 2386597), list(`_classname` = "resource", `_id` = 2386596), list(`_classname` = "resource", `_id` = 2386595), list(
        `_classname` = "resource", `_id` = 2386594), list(`_classname` = "resource", `_id` = 2386593), list(`_classname` = "resource", `_id` = 2386592)), modified = "2023-11-07 17:15:37", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2386605, container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:15:38", createdby = "tobiasko", filechecksum = "7f39f3ce7ce65847db022fbfb8723ac0", junk = "false", modified = "2023-11-07 17:15:38", modifiedby = "tobiasko", name = "WU295745-20231107-1715-rawDiag.pdf", relativepath = "container_33274/workunit_295745/WU295745-20231107-1715-rawDiag.pdf", size = "372725", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33274/workunit_295745/WU295745-20231107-1715-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33274/workunit_295745/WU295745-20231107-1715-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295745)))
The current plot is available as workunit 295745
#rows are 332755
output$download 1...
`geom_smooth()` using formula = 'y ~ x'
#rows are 332755
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc32603ce.pdf
`geom_smooth()` using formula = 'y ~ x'
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc32603ce.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295746, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:16:27", createdby = "tobiasko", description = "input files:\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_007_S583636_TDPwt_1_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_010_S583628_L_TDPmNLS_1_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_012_S583635_S_TDPmNLS_2_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_002_S583634_S_TDPmNLS_1_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_015_S583626_L_TDPwt_1_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_013_S583629_L_TDPmNLS_2_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_004_S583637_TDPwt_2_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_005_S583632_S_TDPwt_1_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_008_S583631_L_GFP_2_Control.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_009_S583627_L_TDPwt_2_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_003_S583633_S_TDPwt_2_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_014_S583630_L_GFP_1_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2386603), list(`_classname` = "resource", `_id` = 2386602), list(`_classname` = "resource", `_id` = 2386601), list(`_classname` = "resource", `_id` = 2386600), list(`_classname` = "resource", `_id` = 2386599), list(`_classname` = "resource", `_id` = 2386598), list(`_classname` = "resource", `_id` = 2386597), list(`_classname` = "resource", `_id` = 2386596), list(`_classname` = "resource", `_id` = 2386595), list(
        `_classname` = "resource", `_id` = 2386594), list(`_classname` = "resource", `_id` = 2386593), list(`_classname` = "resource", `_id` = 2386592)), modified = "2023-11-07 17:16:27", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2386606, container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:16:29", createdby = "tobiasko", filechecksum = "6a1dae5e10f13fe89b3228f700109843", junk = "false", modified = "2023-11-07 17:16:29", modifiedby = "tobiasko", name = "WU295746-20231107-1716-rawDiag.pdf", relativepath = "container_33274/workunit_295746/WU295746-20231107-1716-rawDiag.pdf", size = "1187416", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33274/workunit_295746/WU295746-20231107-1716-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33274/workunit_295746/WU295746-20231107-1716-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295746)))
The current plot is available as workunit 295746
#rows are 332755
output$download 1...
Warning: Removed 1 rows containing non-finite values (`stat_smooth()`).
#rows are 332755
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc156d35ce.pdf
Warning: Removed 1 rows containing non-finite values (`stat_smooth()`).
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc156d35ce.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295747, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:16:42", createdby = "tobiasko", description = "input files:\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_007_S583636_TDPwt_1_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_010_S583628_L_TDPmNLS_1_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_012_S583635_S_TDPmNLS_2_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_002_S583634_S_TDPmNLS_1_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_015_S583626_L_TDPwt_1_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_013_S583629_L_TDPmNLS_2_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_004_S583637_TDPwt_2_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_005_S583632_S_TDPwt_1_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_008_S583631_L_GFP_2_Control.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_009_S583627_L_TDPwt_2_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_003_S583633_S_TDPwt_2_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_014_S583630_L_GFP_1_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2386603), list(`_classname` = "resource", `_id` = 2386602), list(`_classname` = "resource", `_id` = 2386601), list(`_classname` = "resource", `_id` = 2386600), list(`_classname` = "resource", `_id` = 2386599), list(`_classname` = "resource", `_id` = 2386598), list(`_classname` = "resource", `_id` = 2386597), list(`_classname` = "resource", `_id` = 2386596), list(`_classname` = "resource", `_id` = 2386595), list(
        `_classname` = "resource", `_id` = 2386594), list(`_classname` = "resource", `_id` = 2386593), list(`_classname` = "resource", `_id` = 2386592)), modified = "2023-11-07 17:16:42", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2386607, container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:16:43", createdby = "tobiasko", filechecksum = "d699358622de0e9066e51559e803a7cf", junk = "false", modified = "2023-11-07 17:16:43", modifiedby = "tobiasko", name = "WU295747-20231107-1716-rawDiag.pdf", relativepath = "container_33274/workunit_295747/WU295747-20231107-1716-rawDiag.pdf", size = "210950", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33274/workunit_295747/WU295747-20231107-1716-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33274/workunit_295747/WU295747-20231107-1716-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295747)))
The current plot is available as workunit 295747
#rows are 332755
output$download 1...
#rows are 332755
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc7408e603.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc7408e603.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295748, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:17:18", createdby = "tobiasko", description = "input files:\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_007_S583636_TDPwt_1_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_010_S583628_L_TDPmNLS_1_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_012_S583635_S_TDPmNLS_2_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_002_S583634_S_TDPmNLS_1_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_015_S583626_L_TDPwt_1_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_013_S583629_L_TDPmNLS_2_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_004_S583637_TDPwt_2_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_005_S583632_S_TDPwt_1_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_008_S583631_L_GFP_2_Control.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_009_S583627_L_TDPwt_2_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_003_S583633_S_TDPwt_2_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_014_S583630_L_GFP_1_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2386603), list(`_classname` = "resource", `_id` = 2386602), list(`_classname` = "resource", `_id` = 2386601), list(`_classname` = "resource", `_id` = 2386600), list(`_classname` = "resource", `_id` = 2386599), list(`_classname` = "resource", `_id` = 2386598), list(`_classname` = "resource", `_id` = 2386597), list(`_classname` = "resource", `_id` = 2386596), list(`_classname` = "resource", `_id` = 2386595), list(
        `_classname` = "resource", `_id` = 2386594), list(`_classname` = "resource", `_id` = 2386593), list(`_classname` = "resource", `_id` = 2386592)), modified = "2023-11-07 17:17:18", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2386608, container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:17:19", createdby = "tobiasko", filechecksum = "8c2846bf8ed01b2f3272c5f19b6a34a6", junk = "false", modified = "2023-11-07 17:17:20", modifiedby = "tobiasko", name = "WU295748-20231107-1717-rawDiag.pdf", relativepath = "container_33274/workunit_295748/WU295748-20231107-1717-rawDiag.pdf", size = "1421522", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33274/workunit_295748/WU295748-20231107-1717-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33274/workunit_295748/WU295748-20231107-1717-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295748)))
The current plot is available as workunit 295748
#rows are 332755
output$download 1...
#rows are 332755
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bc483c9959.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bc483c9959.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295749, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:17:34", createdby = "tobiasko", description = "input files:\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_007_S583636_TDPwt_1_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_010_S583628_L_TDPmNLS_1_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_012_S583635_S_TDPmNLS_2_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_002_S583634_S_TDPmNLS_1_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_015_S583626_L_TDPwt_1_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_013_S583629_L_TDPmNLS_2_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_004_S583637_TDPwt_2_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_005_S583632_S_TDPwt_1_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_008_S583631_L_GFP_2_Control.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_009_S583627_L_TDPwt_2_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_003_S583633_S_TDPwt_2_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_014_S583630_L_GFP_1_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2386603), list(`_classname` = "resource", `_id` = 2386602), list(`_classname` = "resource", `_id` = 2386601), list(`_classname` = "resource", `_id` = 2386600), list(`_classname` = "resource", `_id` = 2386599), list(`_classname` = "resource", `_id` = 2386598), list(`_classname` = "resource", `_id` = 2386597), list(`_classname` = "resource", `_id` = 2386596), list(`_classname` = "resource", `_id` = 2386595), list(
        `_classname` = "resource", `_id` = 2386594), list(`_classname` = "resource", `_id` = 2386593), list(`_classname` = "resource", `_id` = 2386592)), modified = "2023-11-07 17:17:34", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2386609, container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:17:35", createdby = "tobiasko", filechecksum = "51482d460fbfbe16e409dadd57cd6a85", junk = "false", modified = "2023-11-07 17:17:35", modifiedby = "tobiasko", name = "WU295749-20231107-1717-rawDiag.pdf", relativepath = "container_33274/workunit_295749/WU295749-20231107-1717-rawDiag.pdf", size = "12200", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33274/workunit_295749/WU295749-20231107-1717-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33274/workunit_295749/WU295749-20231107-1717-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295749)))
The current plot is available as workunit 295749
#rows are 332755
output$download 1...
DEBUG queryMass
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
Warning: 'readXICs' is deprecated.
Use 'rawrr::readChromatogram' instead.
See help("Deprecated")
#rows are 332755
output$download 2...
ggsave to file /tmp/RtmpBXhGbU/rawDiag-1438bcd210b35.pdf
generated pdf
/tmp/RtmpBXhGbU/rawDiag-1438bcd210b35.pdf
bfabricShiny::uploadResource ...
list(list(`_classname` = "workunit", `_id` = 295750, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:17:55", createdby = "tobiasko", description = "input files:\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_007_S583636_TDPwt_1_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_010_S583628_L_TDPmNLS_1_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_012_S583635_S_TDPmNLS_2_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_002_S583634_S_TDPmNLS_1_mNLS_S.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_015_S583626_L_TDPwt_1_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_013_S583629_L_TDPmNLS_2_mNLS_L.raw\np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_004_S583637_TDPwt_2_basal.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_005_S583632_S_TDPwt_1_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_008_S583631_L_GFP_2_Control.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_009_S583627_L_TDPwt_2_WT_L.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_003_S583633_S_TDPwt_2_WT_S.raw \np33274/Proteomics/EXPLORIS_2/analytic_20231106/20231106_C33274_014_S583630_L_GFP_1_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2386603), list(`_classname` = "resource", `_id` = 2386602), list(`_classname` = "resource", `_id` = 2386601), list(`_classname` = "resource", `_id` = 2386600), list(`_classname` = "resource", `_id` = 2386599), list(`_classname` = "resource", `_id` = 2386598), list(`_classname` = "resource", `_id` = 2386597), list(`_classname` = "resource", `_id` = 2386596), list(`_classname` = "resource", `_id` = 2386595), list(
        `_classname` = "resource", `_id` = 2386594), list(`_classname` = "resource", `_id` = 2386593), list(`_classname` = "resource", `_id` = 2386592)), modified = "2023-11-07 17:17:55", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2386610, container = list(`_classname` = "order", `_id` = 33274), created = "2023-11-07 17:17:56", createdby = "tobiasko", filechecksum = "f11f6dbec0192a9126f527f87a9f61a4", junk = "false", modified = "2023-11-07 17:17:56", modifiedby = "tobiasko", name = "WU295750-20231107-1717-rawDiag.pdf", relativepath = "container_33274/workunit_295750/WU295750-20231107-1717-rawDiag.pdf", size = "55367", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33274/workunit_295750/WU295750-20231107-1717-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33274/workunit_295750/WU295750-20231107-1717-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295750)))
The current plot is available as workunit 295750
#rows are 332755
output$download 1...
DEBUG renderPlot
plotQCs
#rows are 332755
output$download 1...
output$tic.basepeak <- renderPlot({
#rows are 332755
output$download 2...



#rows are 0
/scratch/cpanse/