Listening on http://127.0.0.1:40127 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw qc ... renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 339690 output$tic.basepeak <- renderPlot({ #rows are 339690 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpHw6WQ7/rawDiag-28410949055190.pdf generated pdf /tmp/RtmpHw6WQ7/rawDiag-28410949055190.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 295841, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:33:24", createdby = "tobiasko", description = "input files:\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2388392), list(`_classname` = "resource", `_id` = 2388391), list(`_classname` = "resource", `_id` = 2388390), list(`_classname` = "resource", `_id` = 2388389), list(`_classname` = "resource", `_id` = 2388388), list(`_classname` = "resource", `_id` = 2388387), list(`_classname` = "resource", `_id` = 2388386), list(`_classname` = "resource", `_id` = 2388385), list(`_classname` = "resource", `_id` = 2388384), list( `_classname` = "resource", `_id` = 2388383), list(`_classname` = "resource", `_id` = 2388382), list(`_classname` = "resource", `_id` = 2388381), list(`_classname` = "resource", `_id` = 2388380), list(`_classname` = "resource", `_id` = 2388379)), modified = "2023-11-10 09:33:24", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2388419, container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:33:26", createdby = "tobiasko", filechecksum = "929e65f09e7a30f08fe640723369ef2c", junk = "false", modified = "2023-11-10 09:33:26", modifiedby = "tobiasko", name = "WU295841-20231110-0933-rawDiag.pdf", relativepath = "container_33324/workunit_295841/WU295841-20231110-0933-rawDiag.pdf", size = "547622", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33324/workunit_295841/WU295841-20231110-0933-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33324/workunit_295841/WU295841-20231110-0933-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295841))) The current plot is available as workunit 295841 #rows are 339690 output$download 1... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 339690 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpHw6WQ7/rawDiag-284109522ea30b.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpHw6WQ7/rawDiag-284109522ea30b.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 295842, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:33:46", createdby = "tobiasko", description = "input files:\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2388392), list(`_classname` = "resource", `_id` = 2388391), list(`_classname` = "resource", `_id` = 2388390), list(`_classname` = "resource", `_id` = 2388389), list(`_classname` = "resource", `_id` = 2388388), list(`_classname` = "resource", `_id` = 2388387), list(`_classname` = "resource", `_id` = 2388386), list(`_classname` = "resource", `_id` = 2388385), list(`_classname` = "resource", `_id` = 2388384), list( `_classname` = "resource", `_id` = 2388383), list(`_classname` = "resource", `_id` = 2388382), list(`_classname` = "resource", `_id` = 2388381), list(`_classname` = "resource", `_id` = 2388380), list(`_classname` = "resource", `_id` = 2388379)), modified = "2023-11-10 09:33:46", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2388420, container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:33:47", createdby = "tobiasko", filechecksum = "c7caadf0cf9e694aeb8a79db7090c6df", junk = "false", modified = "2023-11-10 09:33:47", modifiedby = "tobiasko", name = "WU295842-20231110-0933-rawDiag.pdf", relativepath = "container_33324/workunit_295842/WU295842-20231110-0933-rawDiag.pdf", size = "422869", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33324/workunit_295842/WU295842-20231110-0933-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33324/workunit_295842/WU295842-20231110-0933-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295842))) The current plot is available as workunit 295842 #rows are 339690 output$download 1... #rows are 339690 output$download 2... `geom_smooth()` using formula = 'y ~ x' #rows are 339690 output$download 2... ggsave to file /tmp/RtmpHw6WQ7/rawDiag-2841094c30d474.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpHw6WQ7/rawDiag-2841094c30d474.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 295844, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:35:17", createdby = "tobiasko", description = "input files:\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2388392), list(`_classname` = "resource", `_id` = 2388391), list(`_classname` = "resource", `_id` = 2388390), list(`_classname` = "resource", `_id` = 2388389), list(`_classname` = "resource", `_id` = 2388388), list(`_classname` = "resource", `_id` = 2388387), list(`_classname` = "resource", `_id` = 2388386), list(`_classname` = "resource", `_id` = 2388385), list(`_classname` = "resource", `_id` = 2388384), list( `_classname` = "resource", `_id` = 2388383), list(`_classname` = "resource", `_id` = 2388382), list(`_classname` = "resource", `_id` = 2388381), list(`_classname` = "resource", `_id` = 2388380), list(`_classname` = "resource", `_id` = 2388379)), modified = "2023-11-10 09:35:17", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2388425, container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:35:19", createdby = "tobiasko", filechecksum = "08429f5a640e7bc41532c578c6be5e42", junk = "false", modified = "2023-11-10 09:35:19", modifiedby = "tobiasko", name = "WU295844-20231110-0935-rawDiag.pdf", relativepath = "container_33324/workunit_295844/WU295844-20231110-0935-rawDiag.pdf", size = "1268363", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33324/workunit_295844/WU295844-20231110-0935-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33324/workunit_295844/WU295844-20231110-0935-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295844))) The current plot is available as workunit 295844 #rows are 339690 output$download 1... #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 339690 #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 339690 `geom_smooth()` using formula = 'y ~ x' #rows are 339690 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpHw6WQ7/rawDiag-28410962d972d5.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpHw6WQ7/rawDiag-28410962d972d5.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 295846, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:40:28", createdby = "tobiasko", description = "input files:\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2388392), list(`_classname` = "resource", `_id` = 2388391), list(`_classname` = "resource", `_id` = 2388390), list(`_classname` = "resource", `_id` = 2388389), list(`_classname` = "resource", `_id` = 2388388), list(`_classname` = "resource", `_id` = 2388387), list(`_classname` = "resource", `_id` = 2388386), list(`_classname` = "resource", `_id` = 2388385), list(`_classname` = "resource", `_id` = 2388384), list( `_classname` = "resource", `_id` = 2388383), list(`_classname` = "resource", `_id` = 2388382), list(`_classname` = "resource", `_id` = 2388381), list(`_classname` = "resource", `_id` = 2388380), list(`_classname` = "resource", `_id` = 2388379)), modified = "2023-11-10 09:40:28", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2388427, container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:40:29", createdby = "tobiasko", filechecksum = "6ba32f4b1405d15fcec669c351891cf1", junk = "false", modified = "2023-11-10 09:40:29", modifiedby = "tobiasko", name = "WU295846-20231110-0940-rawDiag.pdf", relativepath = "container_33324/workunit_295846/WU295846-20231110-0940-rawDiag.pdf", size = "1265492", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33324/workunit_295846/WU295846-20231110-0940-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33324/workunit_295846/WU295846-20231110-0940-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295846))) The current plot is available as workunit 295846 #rows are 339690 output$download 1... Warning: Removed 26 rows containing non-finite values (`stat_smooth()`). #rows are 339690 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpHw6WQ7/rawDiag-28410975ae0863.pdf Warning: Removed 26 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpHw6WQ7/rawDiag-28410975ae0863.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 295847, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:40:37", createdby = "tobiasko", description = "input files:\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2388392), list(`_classname` = "resource", `_id` = 2388391), list(`_classname` = "resource", `_id` = 2388390), list(`_classname` = "resource", `_id` = 2388389), list(`_classname` = "resource", `_id` = 2388388), list(`_classname` = "resource", `_id` = 2388387), list(`_classname` = "resource", `_id` = 2388386), list(`_classname` = "resource", `_id` = 2388385), list(`_classname` = "resource", `_id` = 2388384), list( `_classname` = "resource", `_id` = 2388383), list(`_classname` = "resource", `_id` = 2388382), list(`_classname` = "resource", `_id` = 2388381), list(`_classname` = "resource", `_id` = 2388380), list(`_classname` = "resource", `_id` = 2388379)), modified = "2023-11-10 09:40:37", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2388428, container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:40:38", createdby = "tobiasko", filechecksum = "24f9ffb3e62470bfb6dd62cda0aea5a0", junk = "false", modified = "2023-11-10 09:40:38", modifiedby = "tobiasko", name = "WU295847-20231110-0940-rawDiag.pdf", relativepath = "container_33324/workunit_295847/WU295847-20231110-0940-rawDiag.pdf", size = "293647", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33324/workunit_295847/WU295847-20231110-0940-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33324/workunit_295847/WU295847-20231110-0940-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295847))) The current plot is available as workunit 295847 #rows are 339690 output$download 1... #rows are 339690 output$download 2... ggsave to file /tmp/RtmpHw6WQ7/rawDiag-284109577357a2.pdf generated pdf /tmp/RtmpHw6WQ7/rawDiag-284109577357a2.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 295849, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:41:02", createdby = "tobiasko", description = "input files:\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2388392), list(`_classname` = "resource", `_id` = 2388391), list(`_classname` = "resource", `_id` = 2388390), list(`_classname` = "resource", `_id` = 2388389), list(`_classname` = "resource", `_id` = 2388388), list(`_classname` = "resource", `_id` = 2388387), list(`_classname` = "resource", `_id` = 2388386), list(`_classname` = "resource", `_id` = 2388385), list(`_classname` = "resource", `_id` = 2388384), list( `_classname` = "resource", `_id` = 2388383), list(`_classname` = "resource", `_id` = 2388382), list(`_classname` = "resource", `_id` = 2388381), list(`_classname` = "resource", `_id` = 2388380), list(`_classname` = "resource", `_id` = 2388379)), modified = "2023-11-10 09:41:02", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2388429, container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:41:04", createdby = "tobiasko", filechecksum = "375b07e708ff1e5ea1aa3c01b46f8982", junk = "false", modified = "2023-11-10 09:41:04", modifiedby = "tobiasko", name = "WU295849-20231110-0941-rawDiag.pdf", relativepath = "container_33324/workunit_295849/WU295849-20231110-0941-rawDiag.pdf", size = "1224987", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33324/workunit_295849/WU295849-20231110-0941-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33324/workunit_295849/WU295849-20231110-0941-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295849))) The current plot is available as workunit 295849 #rows are 339690 output$download 1... #rows are 339690 output$download 2... ggsave to file /tmp/RtmpHw6WQ7/rawDiag-2841096b886420.pdf generated pdf /tmp/RtmpHw6WQ7/rawDiag-2841096b886420.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 295851, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:41:16", createdby = "tobiasko", description = "input files:\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2388392), list(`_classname` = "resource", `_id` = 2388391), list(`_classname` = "resource", `_id` = 2388390), list(`_classname` = "resource", `_id` = 2388389), list(`_classname` = "resource", `_id` = 2388388), list(`_classname` = "resource", `_id` = 2388387), list(`_classname` = "resource", `_id` = 2388386), list(`_classname` = "resource", `_id` = 2388385), list(`_classname` = "resource", `_id` = 2388384), list( `_classname` = "resource", `_id` = 2388383), list(`_classname` = "resource", `_id` = 2388382), list(`_classname` = "resource", `_id` = 2388381), list(`_classname` = "resource", `_id` = 2388380), list(`_classname` = "resource", `_id` = 2388379)), modified = "2023-11-10 09:41:16", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2388431, container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:41:17", createdby = "tobiasko", filechecksum = "61bd52f62d632171968194e7fccc985e", junk = "false", modified = "2023-11-10 09:41:17", modifiedby = "tobiasko", name = "WU295851-20231110-0941-rawDiag.pdf", relativepath = "container_33324/workunit_295851/WU295851-20231110-0941-rawDiag.pdf", size = "13260", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33324/workunit_295851/WU295851-20231110-0941-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33324/workunit_295851/WU295851-20231110-0941-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295851))) The current plot is available as workunit 295851 #rows are 339690 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 339690 output$download 2... ggsave to file /tmp/RtmpHw6WQ7/rawDiag-284109361f5c0f.pdf generated pdf /tmp/RtmpHw6WQ7/rawDiag-284109361f5c0f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 295852, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:41:33", createdby = "tobiasko", description = "input files:\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_010_S586610_79-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_016_S586599_68-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_018_S586601_70-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_013_S586598_65-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_015_S586597_64-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_008_S586605_74-WT-PROX_Group_1.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_009_S586602_71-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_007_S586607_76-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_002_S586600_69-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_004_S586609_78-KO-PROX_Group_3.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_019_S586606_75-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_005_S586604_73-WT-DIST_Group_2.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_014_S586608_77-KO-DIST_Group_4.raw\np33324/Proteomics/EXPLORIS_2/analytic_20231108/20231108_C33324_003_S586603_72-WT-PROX_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2388392), list(`_classname` = "resource", `_id` = 2388391), list(`_classname` = "resource", `_id` = 2388390), list(`_classname` = "resource", `_id` = 2388389), list(`_classname` = "resource", `_id` = 2388388), list(`_classname` = "resource", `_id` = 2388387), list(`_classname` = "resource", `_id` = 2388386), list(`_classname` = "resource", `_id` = 2388385), list(`_classname` = "resource", `_id` = 2388384), list( `_classname` = "resource", `_id` = 2388383), list(`_classname` = "resource", `_id` = 2388382), list(`_classname` = "resource", `_id` = 2388381), list(`_classname` = "resource", `_id` = 2388380), list(`_classname` = "resource", `_id` = 2388379)), modified = "2023-11-10 09:41:33", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2388435, container = list(`_classname` = "order", `_id` = 33324), created = "2023-11-10 09:41:34", createdby = "tobiasko", filechecksum = "b1d579eacd08fde3a8c07ee47dec6f76", junk = "false", modified = "2023-11-10 09:41:34", modifiedby = "tobiasko", name = "WU295852-20231110-0941-rawDiag.pdf", relativepath = "container_33324/workunit_295852/WU295852-20231110-0941-rawDiag.pdf", size = "40358", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33324/workunit_295852/WU295852-20231110-0941-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33324/workunit_295852/WU295852-20231110-0941-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 295852))) The current plot is available as workunit 295852 #rows are 339690 output$download 1... Execution halted