Listening on http://127.0.0.1:38055 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Warning: The select input "bfabric8-workunit" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_002_S588931_SMB440-1_Control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_003_S588944_SMB440-4_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_004_S588943_SMB440-3_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_005_S588942_SMB440-2_Control.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 76021 output$tic.basepeak <- renderPlot({ #rows are 76021 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpcrVaLU/rawDiag-14781f34b16f1f.pdf generated pdf /tmp/RtmpcrVaLU/rawDiag-14781f34b16f1f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296176, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:06:14", createdby = "tobiasko", description = "input files:\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_005_S588942_SMB440-2_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_002_S588931_SMB440-1_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_003_S588944_SMB440-4_Group_1.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_004_S588943_SMB440-3_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2393002), list(`_classname` = "resource", `_id` = 2393001), list(`_classname` = "resource", `_id` = 2393000), list(`_classname` = "resource", `_id` = 2392999)), modified = "2023-11-16 12:06:14", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395217, container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:06:15", createdby = "tobiasko", filechecksum = "b78e8af4f1b4d17a6eaf21aebdabc749", junk = "false", modified = "2023-11-16 12:06:15", modifiedby = "tobiasko", name = "WU296176-20231116-1206-rawDiag.pdf", relativepath = "container_33399/workunit_296176/WU296176-20231116-1206-rawDiag.pdf", size = "176638", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33399/workunit_296176/WU296176-20231116-1206-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33399/workunit_296176/WU296176-20231116-1206-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296176))) The current plot is available as workunit 296176 #rows are 76021 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 76021 output$download 2... ggsave to file /tmp/RtmpcrVaLU/rawDiag-14781f494fbd53.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpcrVaLU/rawDiag-14781f494fbd53.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296177, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:06:56", createdby = "tobiasko", description = "input files:\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_005_S588942_SMB440-2_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_002_S588931_SMB440-1_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_003_S588944_SMB440-4_Group_1.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_004_S588943_SMB440-3_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2393002), list(`_classname` = "resource", `_id` = 2393001), list(`_classname` = "resource", `_id` = 2393000), list(`_classname` = "resource", `_id` = 2392999)), modified = "2023-11-16 12:06:56", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395218, container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:06:57", createdby = "tobiasko", filechecksum = "326613851d358326b8690374269c6325", junk = "false", modified = "2023-11-16 12:06:57", modifiedby = "tobiasko", name = "WU296177-20231116-1206-rawDiag.pdf", relativepath = "container_33399/workunit_296177/WU296177-20231116-1206-rawDiag.pdf", size = "108505", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33399/workunit_296177/WU296177-20231116-1206-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33399/workunit_296177/WU296177-20231116-1206-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296177))) The current plot is available as workunit 296177 #rows are 76021 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 76021 output$download 2... ggsave to file /tmp/RtmpcrVaLU/rawDiag-14781f2273b2b8.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpcrVaLU/rawDiag-14781f2273b2b8.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296178, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:07:23", createdby = "tobiasko", description = "input files:\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_005_S588942_SMB440-2_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_002_S588931_SMB440-1_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_003_S588944_SMB440-4_Group_1.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_004_S588943_SMB440-3_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2393002), list(`_classname` = "resource", `_id` = 2393001), list(`_classname` = "resource", `_id` = 2393000), list(`_classname` = "resource", `_id` = 2392999)), modified = "2023-11-16 12:07:23", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395219, container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:07:24", createdby = "tobiasko", filechecksum = "e31d9c93e7ee4d8a6c7cde4d349c42c6", junk = "false", modified = "2023-11-16 12:07:24", modifiedby = "tobiasko", name = "WU296178-20231116-1207-rawDiag.pdf", relativepath = "container_33399/workunit_296178/WU296178-20231116-1207-rawDiag.pdf", size = "100889", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33399/workunit_296178/WU296178-20231116-1207-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33399/workunit_296178/WU296178-20231116-1207-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296178))) The current plot is available as workunit 296178 #rows are 76021 output$download 1... #rows are 76021 output$download 2... Warning: Removed 16 rows containing non-finite values (`stat_smooth()`). #rows are 76021 output$download 2... ggsave to file /tmp/RtmpcrVaLU/rawDiag-14781f5315522d.pdf Warning: Removed 16 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpcrVaLU/rawDiag-14781f5315522d.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296179, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:07:55", createdby = "tobiasko", description = "input files:\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_005_S588942_SMB440-2_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_002_S588931_SMB440-1_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_003_S588944_SMB440-4_Group_1.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_004_S588943_SMB440-3_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2393002), list(`_classname` = "resource", `_id` = 2393001), list(`_classname` = "resource", `_id` = 2393000), list(`_classname` = "resource", `_id` = 2392999)), modified = "2023-11-16 12:07:55", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395220, container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:07:56", createdby = "tobiasko", filechecksum = "b72e136a2e46fb407182f87695e79129", junk = "false", modified = "2023-11-16 12:07:56", modifiedby = "tobiasko", name = "WU296179-20231116-1207-rawDiag.pdf", relativepath = "container_33399/workunit_296179/WU296179-20231116-1207-rawDiag.pdf", size = "105686", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33399/workunit_296179/WU296179-20231116-1207-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33399/workunit_296179/WU296179-20231116-1207-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296179))) The current plot is available as workunit 296179 #rows are 76021 output$download 1... #rows are 76021 output$download 2... ggsave to file /tmp/RtmpcrVaLU/rawDiag-14781f76aea54c.pdf generated pdf /tmp/RtmpcrVaLU/rawDiag-14781f76aea54c.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296180, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:08:14", createdby = "tobiasko", description = "input files:\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_005_S588942_SMB440-2_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_002_S588931_SMB440-1_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_003_S588944_SMB440-4_Group_1.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_004_S588943_SMB440-3_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2393002), list(`_classname` = "resource", `_id` = 2393001), list(`_classname` = "resource", `_id` = 2393000), list(`_classname` = "resource", `_id` = 2392999)), modified = "2023-11-16 12:08:14", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395221, container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:08:15", createdby = "tobiasko", filechecksum = "d6edec2a127a8648ab9abcf32512df0d", junk = "false", modified = "2023-11-16 12:08:15", modifiedby = "tobiasko", name = "WU296180-20231116-1208-rawDiag.pdf", relativepath = "container_33399/workunit_296180/WU296180-20231116-1208-rawDiag.pdf", size = "365867", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33399/workunit_296180/WU296180-20231116-1208-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33399/workunit_296180/WU296180-20231116-1208-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296180))) The current plot is available as workunit 296180 #rows are 76021 output$download 1... #rows are 76021 output$download 2... ggsave to file /tmp/RtmpcrVaLU/rawDiag-14781f6daa61ec.pdf generated pdf /tmp/RtmpcrVaLU/rawDiag-14781f6daa61ec.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296181, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:08:45", createdby = "tobiasko", description = "input files:\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_005_S588942_SMB440-2_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_002_S588931_SMB440-1_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_003_S588944_SMB440-4_Group_1.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_004_S588943_SMB440-3_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2393002), list(`_classname` = "resource", `_id` = 2393001), list(`_classname` = "resource", `_id` = 2393000), list(`_classname` = "resource", `_id` = 2392999)), modified = "2023-11-16 12:08:45", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395222, container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:08:47", createdby = "tobiasko", filechecksum = "544c017f7c873d25192c14c4c25e13a2", junk = "false", modified = "2023-11-16 12:08:47", modifiedby = "tobiasko", name = "WU296181-20231116-1208-rawDiag.pdf", relativepath = "container_33399/workunit_296181/WU296181-20231116-1208-rawDiag.pdf", size = "10166", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33399/workunit_296181/WU296181-20231116-1208-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33399/workunit_296181/WU296181-20231116-1208-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296181))) The current plot is available as workunit 296181 #rows are 76021 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 76021 output$download 2... Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 76021 output$download 2... Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 76021 output$download 2... DEBUG renderPlot plotQCs #rows are 76021 output$download 2... #rows are 76021 output$download 2... ggsave to file /tmp/RtmpcrVaLU/rawDiag-14781f2cc9afd0.pdf generated pdf /tmp/RtmpcrVaLU/rawDiag-14781f2cc9afd0.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296182, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:11:24", createdby = "tobiasko", description = "input files:\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_005_S588942_SMB440-2_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_002_S588931_SMB440-1_Control.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_003_S588944_SMB440-4_Group_1.raw\np33399/Proteomics/QEXACTIVE_1/analytic_20231115/20231115_C33399_004_S588943_SMB440-3_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2393002), list(`_classname` = "resource", `_id` = 2393001), list(`_classname` = "resource", `_id` = 2393000), list(`_classname` = "resource", `_id` = 2392999)), modified = "2023-11-16 12:11:24", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395223, container = list(`_classname` = "order", `_id` = 33399), created = "2023-11-16 12:11:25", createdby = "tobiasko", filechecksum = "a9079fdb6b3931cd44e115d6c26e76de", junk = "false", modified = "2023-11-16 12:11:25", modifiedby = "tobiasko", name = "WU296182-20231116-1211-rawDiag.pdf", relativepath = "container_33399/workunit_296182/WU296182-20231116-1211-rawDiag.pdf", size = "41200", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33399/workunit_296182/WU296182-20231116-1211-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33399/workunit_296182/WU296182-20231116-1211-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296182))) The current plot is available as workunit 296182 #rows are 76021 output$download 1... output$tic.basepeak <- renderPlot({ #rows are 76021 output$download 2... #rows are 0 /scratch/cpanse/ output$tic.basepeak <- renderPlot({ #rows are 76021 output$download 2... Execution halted