Listening on http://127.0.0.1:36353 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_029_S572801_P90plus3_NoLS_Doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_002_S572811_R90-1_NoLS_noDoxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_013_S572796_L92plus1_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_022_S572803_R90plus2_NoLS_Doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_006_S572806_L90plus2_NoLS_Doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_019_S572805_L90plus1_NoLS_Doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_032_S572793_R92plus1_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_033_S572797_L92plus2_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_012_S572804_R90plus3_NoLS_Doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_004_S572807_L90plus3_NoLS_Doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_028_S572812_R90-2_NoLS_noDoxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_008_S572790_P92plus1_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_015_S572792_P92plus3_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_024_S572814_L90-1_NoLS_noDoxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_034_S572795_R92plus3_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_014_S572791_P92plus2_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_026_S572816_L90-3_NoLS_noDoxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_016_S572802_R90plus1_NoLS_Doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_005_S572799_P90plus1_NoLS_Doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_017_S572794_R92plus2_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_003_S572809_P90-2_NoLS_noDoxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_007_S572810_P90-3_NoLS_noDoxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_018_S572798_L92plus3_NLS_doxy.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_009_S572800_P90plus2_NoLS_Doxy.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_023_S572813_R90-3_NoLS_noDoxy.raw qc ... renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_027_S572808_P90-1_NoLS_noDoxy.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_025_S572815_L90-2_NoLS_noDoxy.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 785892 output$tic.basepeak <- renderPlot({ #rows are 785892 output$download 2... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 785892 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b2b70080e.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b2b70080e.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296228, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:27:39", createdby = "tobiasko", description = "input files:\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_029_S572801_P90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_002_S572811_R90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_013_S572796_L92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_022_S572803_R90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_006_S572806_L90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_019_S572805_L90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_032_S572793_R92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_033_S572797_L92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_012_S572804_R90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_004_S572807_L90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_028_S572812_R90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_008_S572790_P92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_015_S572792_P92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_024_S572814_L90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_034_S572795_R92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_014_S572791_P92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_026_S572816_L90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_016_S572802_R90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_005_S572799_P90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_017_S572794_R92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_003_S572809_P90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_007_S572810_P90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_018_S572798_L92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_009_S572800_P90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_027_S572808_P90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_025_S572815_L90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_023_S572813_R90-3_NoLS_noDoxy.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395681), list(`_classname` = "resource", `_id` = 2395680), list(`_classname` = "resource", `_id` = 2395679), list(`_classname` = "resource", `_id` = 2395678), list(`_classname` = "resource", `_id` = 2395677), list(`_classname` = "resource", `_id` = 2395676), list(`_classname` = "resource", `_id` = 2395675), list(`_classname` = "resource", `_id` = 2395674), list(`_classname` = "resource", `_id` = 2395673), list( `_classname` = "resource", `_id` = 2395672), list(`_classname` = "resource", `_id` = 2395671), list(`_classname` = "resource", `_id` = 2395670), list(`_classname` = "resource", `_id` = 2395669), list(`_classname` = "resource", `_id` = 2395668), list(`_classname` = "resource", `_id` = 2395667), list(`_classname` = "resource", `_id` = 2395666), list(`_classname` = "resource", `_id` = 2395665), list(`_classname` = "resource", `_id` = 2395664), list(`_classname` = "resource", `_id` = 2395663), list(`_classname` = "resource", `_id` = 2395662), list(`_classname` = "resource", `_id` = 2395661), list(`_classname` = "resource", `_id` = 2395660), list(`_classname` = "resource", `_id` = 2395659), list(`_classname` = "resource", `_id` = 2395658), list(`_classname` = "resource", `_id` = 2395657), list(`_classname` = "resource", `_id` = 2395656), list(`_classname` = "resource", `_id` = 2395655)), modified = "2023-11-17 11:27:39", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395684, container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:27:41", createdby = "tobiasko", filechecksum = "d7a81ae07a2a63b53c9dfa2e492a75c0", junk = "false", modified = "2023-11-17 11:27:41", modifiedby = "tobiasko", name = "WU296228-20231117-1127-rawDiag.pdf", relativepath = "container_33078/workunit_296228/WU296228-20231117-1127-rawDiag.pdf", size = "793840", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33078/workunit_296228/WU296228-20231117-1127-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33078/workunit_296228/WU296228-20231117-1127-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296228))) The current plot is available as workunit 296228 #rows are 785892 output$download 1... saving 'login and webservicepassword' ... `geom_smooth()` using formula = 'y ~ x' #rows are 785892 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b443ffa31.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b443ffa31.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296229, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:30:53", createdby = "tobiasko", description = "input files:\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_029_S572801_P90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_002_S572811_R90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_013_S572796_L92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_022_S572803_R90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_006_S572806_L90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_019_S572805_L90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_032_S572793_R92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_033_S572797_L92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_012_S572804_R90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_004_S572807_L90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_028_S572812_R90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_008_S572790_P92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_015_S572792_P92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_024_S572814_L90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_034_S572795_R92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_014_S572791_P92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_026_S572816_L90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_016_S572802_R90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_005_S572799_P90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_017_S572794_R92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_003_S572809_P90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_007_S572810_P90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_018_S572798_L92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_009_S572800_P90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_027_S572808_P90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_025_S572815_L90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_023_S572813_R90-3_NoLS_noDoxy.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395681), list(`_classname` = "resource", `_id` = 2395680), list(`_classname` = "resource", `_id` = 2395679), list(`_classname` = "resource", `_id` = 2395678), list(`_classname` = "resource", `_id` = 2395677), list(`_classname` = "resource", `_id` = 2395676), list(`_classname` = "resource", `_id` = 2395675), list(`_classname` = "resource", `_id` = 2395674), list(`_classname` = "resource", `_id` = 2395673), list( `_classname` = "resource", `_id` = 2395672), list(`_classname` = "resource", `_id` = 2395671), list(`_classname` = "resource", `_id` = 2395670), list(`_classname` = "resource", `_id` = 2395669), list(`_classname` = "resource", `_id` = 2395668), list(`_classname` = "resource", `_id` = 2395667), list(`_classname` = "resource", `_id` = 2395666), list(`_classname` = "resource", `_id` = 2395665), list(`_classname` = "resource", `_id` = 2395664), list(`_classname` = "resource", `_id` = 2395663), list(`_classname` = "resource", `_id` = 2395662), list(`_classname` = "resource", `_id` = 2395661), list(`_classname` = "resource", `_id` = 2395660), list(`_classname` = "resource", `_id` = 2395659), list(`_classname` = "resource", `_id` = 2395658), list(`_classname` = "resource", `_id` = 2395657), list(`_classname` = "resource", `_id` = 2395656), list(`_classname` = "resource", `_id` = 2395655)), modified = "2023-11-17 11:30:53", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395685, container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:30:55", createdby = "tobiasko", filechecksum = "4b5c040456b850eee17be9171d5ed9d8", junk = "false", modified = "2023-11-17 11:30:55", modifiedby = "tobiasko", name = "WU296229-20231117-1130-rawDiag.pdf", relativepath = "container_33078/workunit_296229/WU296229-20231117-1130-rawDiag.pdf", size = "4290882", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33078/workunit_296229/WU296229-20231117-1130-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33078/workunit_296229/WU296229-20231117-1130-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296229))) The current plot is available as workunit 296229 #rows are 785892 output$download 1... #rows are 785892 output$download 2... Warning: Removed 147 rows containing non-finite values (`stat_smooth()`). Warning: Removed 44 rows containing missing values (`geom_line()`). #rows are 785892 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b726b58df.pdf Warning: Removed 147 rows containing non-finite values (`stat_smooth()`). Warning: Removed 44 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b726b58df.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296230, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:31:26", createdby = "tobiasko", description = "input files:\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_029_S572801_P90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_002_S572811_R90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_013_S572796_L92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_022_S572803_R90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_006_S572806_L90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_019_S572805_L90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_032_S572793_R92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_033_S572797_L92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_012_S572804_R90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_004_S572807_L90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_028_S572812_R90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_008_S572790_P92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_015_S572792_P92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_024_S572814_L90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_034_S572795_R92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_014_S572791_P92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_026_S572816_L90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_016_S572802_R90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_005_S572799_P90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_017_S572794_R92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_003_S572809_P90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_007_S572810_P90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_018_S572798_L92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_009_S572800_P90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_027_S572808_P90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_025_S572815_L90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_023_S572813_R90-3_NoLS_noDoxy.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395681), list(`_classname` = "resource", `_id` = 2395680), list(`_classname` = "resource", `_id` = 2395679), list(`_classname` = "resource", `_id` = 2395678), list(`_classname` = "resource", `_id` = 2395677), list(`_classname` = "resource", `_id` = 2395676), list(`_classname` = "resource", `_id` = 2395675), list(`_classname` = "resource", `_id` = 2395674), list(`_classname` = "resource", `_id` = 2395673), list( `_classname` = "resource", `_id` = 2395672), list(`_classname` = "resource", `_id` = 2395671), list(`_classname` = "resource", `_id` = 2395670), list(`_classname` = "resource", `_id` = 2395669), list(`_classname` = "resource", `_id` = 2395668), list(`_classname` = "resource", `_id` = 2395667), list(`_classname` = "resource", `_id` = 2395666), list(`_classname` = "resource", `_id` = 2395665), list(`_classname` = "resource", `_id` = 2395664), list(`_classname` = "resource", `_id` = 2395663), list(`_classname` = "resource", `_id` = 2395662), list(`_classname` = "resource", `_id` = 2395661), list(`_classname` = "resource", `_id` = 2395660), list(`_classname` = "resource", `_id` = 2395659), list(`_classname` = "resource", `_id` = 2395658), list(`_classname` = "resource", `_id` = 2395657), list(`_classname` = "resource", `_id` = 2395656), list(`_classname` = "resource", `_id` = 2395655)), modified = "2023-11-17 11:31:26", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395686, container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:31:28", createdby = "tobiasko", filechecksum = "359b92693993e5289948466b83cebb01", junk = "false", modified = "2023-11-17 11:31:28", modifiedby = "tobiasko", name = "WU296230-20231117-1131-rawDiag.pdf", relativepath = "container_33078/workunit_296230/WU296230-20231117-1131-rawDiag.pdf", size = "558686", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33078/workunit_296230/WU296230-20231117-1131-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33078/workunit_296230/WU296230-20231117-1131-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296230))) The current plot is available as workunit 296230 #rows are 785892 output$download 1... #rows are 785892 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b2ebbbe25.pdf generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b2ebbbe25.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296231, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:33:37", createdby = "tobiasko", description = "input files:\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_029_S572801_P90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_002_S572811_R90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_013_S572796_L92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_022_S572803_R90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_006_S572806_L90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_019_S572805_L90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_032_S572793_R92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_033_S572797_L92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_012_S572804_R90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_004_S572807_L90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_028_S572812_R90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_008_S572790_P92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_015_S572792_P92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_024_S572814_L90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_034_S572795_R92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_014_S572791_P92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_026_S572816_L90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_016_S572802_R90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_005_S572799_P90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_017_S572794_R92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_003_S572809_P90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_007_S572810_P90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_018_S572798_L92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_009_S572800_P90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_027_S572808_P90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_025_S572815_L90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_023_S572813_R90-3_NoLS_noDoxy.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395681), list(`_classname` = "resource", `_id` = 2395680), list(`_classname` = "resource", `_id` = 2395679), list(`_classname` = "resource", `_id` = 2395678), list(`_classname` = "resource", `_id` = 2395677), list(`_classname` = "resource", `_id` = 2395676), list(`_classname` = "resource", `_id` = 2395675), list(`_classname` = "resource", `_id` = 2395674), list(`_classname` = "resource", `_id` = 2395673), list( `_classname` = "resource", `_id` = 2395672), list(`_classname` = "resource", `_id` = 2395671), list(`_classname` = "resource", `_id` = 2395670), list(`_classname` = "resource", `_id` = 2395669), list(`_classname` = "resource", `_id` = 2395668), list(`_classname` = "resource", `_id` = 2395667), list(`_classname` = "resource", `_id` = 2395666), list(`_classname` = "resource", `_id` = 2395665), list(`_classname` = "resource", `_id` = 2395664), list(`_classname` = "resource", `_id` = 2395663), list(`_classname` = "resource", `_id` = 2395662), list(`_classname` = "resource", `_id` = 2395661), list(`_classname` = "resource", `_id` = 2395660), list(`_classname` = "resource", `_id` = 2395659), list(`_classname` = "resource", `_id` = 2395658), list(`_classname` = "resource", `_id` = 2395657), list(`_classname` = "resource", `_id` = 2395656), list(`_classname` = "resource", `_id` = 2395655)), modified = "2023-11-17 11:33:37", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395687, container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:33:39", createdby = "tobiasko", filechecksum = "e5028e1fb41afdc8456ec90076fb9a91", junk = "false", modified = "2023-11-17 11:33:40", modifiedby = "tobiasko", name = "WU296231-20231117-1133-rawDiag.pdf", relativepath = "container_33078/workunit_296231/WU296231-20231117-1133-rawDiag.pdf", size = "3929199", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33078/workunit_296231/WU296231-20231117-1133-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33078/workunit_296231/WU296231-20231117-1133-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296231))) The current plot is available as workunit 296231 #rows are 785892 output$download 1... #rows are 785892 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b26bf1c7d.pdf generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b26bf1c7d.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296232, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:34:14", createdby = "tobiasko", description = "input files:\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_029_S572801_P90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_002_S572811_R90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_013_S572796_L92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_022_S572803_R90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_006_S572806_L90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_019_S572805_L90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_032_S572793_R92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_033_S572797_L92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_012_S572804_R90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_004_S572807_L90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_028_S572812_R90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_008_S572790_P92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_015_S572792_P92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_024_S572814_L90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_034_S572795_R92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_014_S572791_P92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_026_S572816_L90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_016_S572802_R90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_005_S572799_P90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_017_S572794_R92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_003_S572809_P90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_007_S572810_P90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_018_S572798_L92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_009_S572800_P90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_027_S572808_P90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_025_S572815_L90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_023_S572813_R90-3_NoLS_noDoxy.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395681), list(`_classname` = "resource", `_id` = 2395680), list(`_classname` = "resource", `_id` = 2395679), list(`_classname` = "resource", `_id` = 2395678), list(`_classname` = "resource", `_id` = 2395677), list(`_classname` = "resource", `_id` = 2395676), list(`_classname` = "resource", `_id` = 2395675), list(`_classname` = "resource", `_id` = 2395674), list(`_classname` = "resource", `_id` = 2395673), list( `_classname` = "resource", `_id` = 2395672), list(`_classname` = "resource", `_id` = 2395671), list(`_classname` = "resource", `_id` = 2395670), list(`_classname` = "resource", `_id` = 2395669), list(`_classname` = "resource", `_id` = 2395668), list(`_classname` = "resource", `_id` = 2395667), list(`_classname` = "resource", `_id` = 2395666), list(`_classname` = "resource", `_id` = 2395665), list(`_classname` = "resource", `_id` = 2395664), list(`_classname` = "resource", `_id` = 2395663), list(`_classname` = "resource", `_id` = 2395662), list(`_classname` = "resource", `_id` = 2395661), list(`_classname` = "resource", `_id` = 2395660), list(`_classname` = "resource", `_id` = 2395659), list(`_classname` = "resource", `_id` = 2395658), list(`_classname` = "resource", `_id` = 2395657), list(`_classname` = "resource", `_id` = 2395656), list(`_classname` = "resource", `_id` = 2395655)), modified = "2023-11-17 11:34:14", modifiedby = "tobiasko", name = "cycle time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395688, container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:34:15", createdby = "tobiasko", filechecksum = "ae135c828201ab24647fd302e6c7e2fa", junk = "false", modified = "2023-11-17 11:34:15", modifiedby = "tobiasko", name = "WU296232-20231117-1134-rawDiag.pdf", relativepath = "container_33078/workunit_296232/WU296232-20231117-1134-rawDiag.pdf", size = "575644", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33078/workunit_296232/WU296232-20231117-1134-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33078/workunit_296232/WU296232-20231117-1134-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296232))) The current plot is available as workunit 296232 #rows are 785892 output$download 1... #rows are 785892 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b5ac3cd93.pdf generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b5ac3cd93.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296233, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:34:37", createdby = "tobiasko", description = "input files:\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_029_S572801_P90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_002_S572811_R90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_013_S572796_L92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_022_S572803_R90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_006_S572806_L90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_019_S572805_L90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_032_S572793_R92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_033_S572797_L92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_012_S572804_R90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_004_S572807_L90plus3_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_028_S572812_R90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_008_S572790_P92plus1_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_015_S572792_P92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_024_S572814_L90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_034_S572795_R92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_014_S572791_P92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_026_S572816_L90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_016_S572802_R90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_005_S572799_P90plus1_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_017_S572794_R92plus2_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_003_S572809_P90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_007_S572810_P90-3_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_018_S572798_L92plus3_NLS_doxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_009_S572800_P90plus2_NoLS_Doxy.raw\np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_027_S572808_P90-1_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_025_S572815_L90-2_NoLS_noDoxy.raw \np33078/Proteomics/EXPLORIS_1/analytic_20231115/20231115_C33078_023_S572813_R90-3_NoLS_noDoxy.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395681), list(`_classname` = "resource", `_id` = 2395680), list(`_classname` = "resource", `_id` = 2395679), list(`_classname` = "resource", `_id` = 2395678), list(`_classname` = "resource", `_id` = 2395677), list(`_classname` = "resource", `_id` = 2395676), list(`_classname` = "resource", `_id` = 2395675), list(`_classname` = "resource", `_id` = 2395674), list(`_classname` = "resource", `_id` = 2395673), list( `_classname` = "resource", `_id` = 2395672), list(`_classname` = "resource", `_id` = 2395671), list(`_classname` = "resource", `_id` = 2395670), list(`_classname` = "resource", `_id` = 2395669), list(`_classname` = "resource", `_id` = 2395668), list(`_classname` = "resource", `_id` = 2395667), list(`_classname` = "resource", `_id` = 2395666), list(`_classname` = "resource", `_id` = 2395665), list(`_classname` = "resource", `_id` = 2395664), list(`_classname` = "resource", `_id` = 2395663), list(`_classname` = "resource", `_id` = 2395662), list(`_classname` = "resource", `_id` = 2395661), list(`_classname` = "resource", `_id` = 2395660), list(`_classname` = "resource", `_id` = 2395659), list(`_classname` = "resource", `_id` = 2395658), list(`_classname` = "resource", `_id` = 2395657), list(`_classname` = "resource", `_id` = 2395656), list(`_classname` = "resource", `_id` = 2395655)), modified = "2023-11-17 11:34:37", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395689, container = list(`_classname` = "order", `_id` = 33078), created = "2023-11-17 11:34:38", createdby = "tobiasko", filechecksum = "a5aa791e532b0a9d3717b1b4d7a9678e", junk = "false", modified = "2023-11-17 11:34:38", modifiedby = "tobiasko", name = "WU296233-20231117-1134-rawDiag.pdf", relativepath = "container_33078/workunit_296233/WU296233-20231117-1134-rawDiag.pdf", size = "18025", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33078/workunit_296233/WU296233-20231117-1134-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33078/workunit_296233/WU296233-20231117-1134-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296233))) The current plot is available as workunit 296233 #rows are 785892 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 785892 output$download 2... DEBUG renderPlot plotQCs #rows are 785892 output$download 2... saving 'login and webservicepassword' ... #rows are 785892 output$download 2... #rows are 785892 output$download 2... output$scan.frequency <- renderPlot #rows are 785892 output$download 2... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 785892 output$download 2... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_004_S588450_ExpB_2D_12Y_AK23_4C_1h_Untreated.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_002_S588449_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_006_S588451_ExpB_2D_12Y_AK23_37C_1h_Treated.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 57662 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 57662 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b7e731449.pdf generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b7e731449.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296239, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:51:53", createdby = "tobiasko", description = "input files:\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_002_S588449_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_004_S588450_ExpB_2D_12Y_AK23_4C_1h_Untreated.raw \np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_006_S588451_ExpB_2D_12Y_AK23_37C_1h_Treated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395620), list(`_classname` = "resource", `_id` = 2395619), list(`_classname` = "resource", `_id` = 2395618)), modified = "2023-11-17 12:51:53", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395704, container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:51:54", createdby = "tobiasko", filechecksum = "3e0c0d8e0b44fff66d1c0e1a2f2f3763", junk = "false", modified = "2023-11-17 12:51:54", modifiedby = "tobiasko", name = "WU296239-20231117-1251-rawDiag.pdf", relativepath = "container_33379/workunit_296239/WU296239-20231117-1251-rawDiag.pdf", size = "143928", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33379/workunit_296239/WU296239-20231117-1251-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33379/workunit_296239/WU296239-20231117-1251-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296239))) The current plot is available as workunit 296239 #rows are 57662 output$download 1... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 57662 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b58bf188f.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b58bf188f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296240, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:54:33", createdby = "tobiasko", description = "input files:\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_002_S588449_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_004_S588450_ExpB_2D_12Y_AK23_4C_1h_Untreated.raw \np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_006_S588451_ExpB_2D_12Y_AK23_37C_1h_Treated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395620), list(`_classname` = "resource", `_id` = 2395619), list(`_classname` = "resource", `_id` = 2395618)), modified = "2023-11-17 12:54:33", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395705, container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:54:34", createdby = "tobiasko", filechecksum = "1b633702ac4967a8ee6ed0ee79c2345b", junk = "false", modified = "2023-11-17 12:54:34", modifiedby = "tobiasko", name = "WU296240-20231117-1254-rawDiag.pdf", relativepath = "container_33379/workunit_296240/WU296240-20231117-1254-rawDiag.pdf", size = "82631", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33379/workunit_296240/WU296240-20231117-1254-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33379/workunit_296240/WU296240-20231117-1254-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296240))) The current plot is available as workunit 296240 #rows are 57662 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 57662 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b4b2a716e.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b4b2a716e.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296241, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:54:46", createdby = "tobiasko", description = "input files:\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_002_S588449_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_004_S588450_ExpB_2D_12Y_AK23_4C_1h_Untreated.raw \np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_006_S588451_ExpB_2D_12Y_AK23_37C_1h_Treated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395620), list(`_classname` = "resource", `_id` = 2395619), list(`_classname` = "resource", `_id` = 2395618)), modified = "2023-11-17 12:54:46", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395706, container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:54:47", createdby = "tobiasko", filechecksum = "f0cdc7489063a71f58fd1ed765d76a1f", junk = "false", modified = "2023-11-17 12:54:47", modifiedby = "tobiasko", name = "WU296241-20231117-1254-rawDiag.pdf", relativepath = "container_33379/workunit_296241/WU296241-20231117-1254-rawDiag.pdf", size = "57125", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33379/workunit_296241/WU296241-20231117-1254-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33379/workunit_296241/WU296241-20231117-1254-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296241))) The current plot is available as workunit 296241 #rows are 57662 output$download 1... Warning: Removed 398 rows containing non-finite values (`stat_smooth()`). #rows are 57662 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b79e62f94.pdf Warning: Removed 398 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b79e62f94.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296242, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:55:10", createdby = "tobiasko", description = "input files:\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_002_S588449_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_004_S588450_ExpB_2D_12Y_AK23_4C_1h_Untreated.raw \np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_006_S588451_ExpB_2D_12Y_AK23_37C_1h_Treated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395620), list(`_classname` = "resource", `_id` = 2395619), list(`_classname` = "resource", `_id` = 2395618)), modified = "2023-11-17 12:55:10", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395707, container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:55:11", createdby = "tobiasko", filechecksum = "60e9628f8f7356ca62c36b53c3ec1efa", junk = "false", modified = "2023-11-17 12:55:11", modifiedby = "tobiasko", name = "WU296242-20231117-1255-rawDiag.pdf", relativepath = "container_33379/workunit_296242/WU296242-20231117-1255-rawDiag.pdf", size = "81179", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33379/workunit_296242/WU296242-20231117-1255-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33379/workunit_296242/WU296242-20231117-1255-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296242))) The current plot is available as workunit 296242 #rows are 57662 output$download 1... #rows are 57662 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b20a54c11.pdf generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b20a54c11.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296243, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:55:32", createdby = "tobiasko", description = "input files:\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_002_S588449_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_004_S588450_ExpB_2D_12Y_AK23_4C_1h_Untreated.raw \np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_006_S588451_ExpB_2D_12Y_AK23_37C_1h_Treated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395620), list(`_classname` = "resource", `_id` = 2395619), list(`_classname` = "resource", `_id` = 2395618)), modified = "2023-11-17 12:55:32", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395708, container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:55:33", createdby = "tobiasko", filechecksum = "d01d5129e63744fffe03b62bd16a96b2", junk = "false", modified = "2023-11-17 12:55:33", modifiedby = "tobiasko", name = "WU296243-20231117-1255-rawDiag.pdf", relativepath = "container_33379/workunit_296243/WU296243-20231117-1255-rawDiag.pdf", size = "284283", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33379/workunit_296243/WU296243-20231117-1255-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33379/workunit_296243/WU296243-20231117-1255-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296243))) The current plot is available as workunit 296243 #rows are 57662 output$download 1... #rows are 57662 output$download 2... ggsave to file /tmp/Rtmpo8OnSo/rawDiag-1f612b7b6919a4.pdf generated pdf /tmp/Rtmpo8OnSo/rawDiag-1f612b7b6919a4.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296244, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:56:05", createdby = "tobiasko", description = "input files:\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_002_S588449_ExpB_2D_12Y_mIgG_37C_1h_negative_control.raw\np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_004_S588450_ExpB_2D_12Y_AK23_4C_1h_Untreated.raw \np33379/Proteomics/QEXACTIVE_1/analytic_20231116/20231116_C33379_006_S588451_ExpB_2D_12Y_AK23_37C_1h_Treated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2395620), list(`_classname` = "resource", `_id` = 2395619), list(`_classname` = "resource", `_id` = 2395618)), modified = "2023-11-17 12:56:05", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2395709, container = list(`_classname` = "order", `_id` = 33379), created = "2023-11-17 12:56:06", createdby = "tobiasko", filechecksum = "37b2b45c813c7d8b50e3dc1aad4eb577", junk = "false", modified = "2023-11-17 12:56:06", modifiedby = "tobiasko", name = "WU296244-20231117-1256-rawDiag.pdf", relativepath = "container_33379/workunit_296244/WU296244-20231117-1256-rawDiag.pdf", size = "9418", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33379/workunit_296244/WU296244-20231117-1256-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33379/workunit_296244/WU296244-20231117-1256-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296244))) The current plot is available as workunit 296244 #rows are 57662 output$download 1... Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 57662 output$download 2... DEBUG renderPlot plotQCs #rows are 57662 output$download 2... #rows are 57662 output$download 2...