Listening on http://127.0.0.1:42207 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_002_S594254_Beads_rep2_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_004_S594247_CEP290_rep1_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_007_S594249_NPHP3_rep1_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_005_S594252_IgGRabbit_rep2_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_008_S594253_Beads_rep1_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_003_S594250_NPHP3_rep2_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_010_S594251_IgGRabbit_rep1_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_009_S594248_CEP290_rep2_Group_1.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 169311 output$tic.basepeak <- renderPlot({ #rows are 169311 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/RtmpMGu5ue/rawDiag-121da210681684.pdf generated pdf /tmp/RtmpMGu5ue/rawDiag-121da210681684.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296297, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:51:29", createdby = "tobiasko", description = "input files:\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_005_S594252_IgGRabbit_rep2_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_010_S594251_IgGRabbit_rep1_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_007_S594249_NPHP3_rep1_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_008_S594253_Beads_rep1_Group_4.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_004_S594247_CEP290_rep1_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_009_S594248_CEP290_rep2_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_003_S594250_NPHP3_rep2_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_002_S594254_Beads_rep2_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2396509), list(`_classname` = "resource", `_id` = 2396508), list(`_classname` = "resource", `_id` = 2396507), list(`_classname` = "resource", `_id` = 2396506), list(`_classname` = "resource", `_id` = 2396505), list(`_classname` = "resource", `_id` = 2396504), list(`_classname` = "resource", `_id` = 2396503), list(`_classname` = "resource", `_id` = 2396502)), modified = "2023-11-20 09:51:29", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2396510, container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:51:30", createdby = "tobiasko", filechecksum = "e60333fd9fc5a7fc8de26552249c37da", junk = "false", modified = "2023-11-20 09:51:30", modifiedby = "tobiasko", name = "WU296297-20231120-0951-rawDiag.pdf", relativepath = "container_33419/workunit_296297/WU296297-20231120-0951-rawDiag.pdf", size = "188006", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33419/workunit_296297/WU296297-20231120-0951-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33419/workunit_296297/WU296297-20231120-0951-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296297))) The current plot is available as workunit 296297 #rows are 169311 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 169311 output$download 2... ggsave to file /tmp/RtmpMGu5ue/rawDiag-121da24faa319.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpMGu5ue/rawDiag-121da24faa319.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296298, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:51:47", createdby = "tobiasko", description = "input files:\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_005_S594252_IgGRabbit_rep2_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_010_S594251_IgGRabbit_rep1_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_007_S594249_NPHP3_rep1_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_008_S594253_Beads_rep1_Group_4.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_004_S594247_CEP290_rep1_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_009_S594248_CEP290_rep2_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_003_S594250_NPHP3_rep2_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_002_S594254_Beads_rep2_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2396509), list(`_classname` = "resource", `_id` = 2396508), list(`_classname` = "resource", `_id` = 2396507), list(`_classname` = "resource", `_id` = 2396506), list(`_classname` = "resource", `_id` = 2396505), list(`_classname` = "resource", `_id` = 2396504), list(`_classname` = "resource", `_id` = 2396503), list(`_classname` = "resource", `_id` = 2396502)), modified = "2023-11-20 09:51:47", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2396511, container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:51:49", createdby = "tobiasko", filechecksum = "91fc7c014e0d2c1fd81a1069ca58e2f7", junk = "false", modified = "2023-11-20 09:51:49", modifiedby = "tobiasko", name = "WU296298-20231120-0951-rawDiag.pdf", relativepath = "container_33419/workunit_296298/WU296298-20231120-0951-rawDiag.pdf", size = "220894", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33419/workunit_296298/WU296298-20231120-0951-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33419/workunit_296298/WU296298-20231120-0951-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296298))) The current plot is available as workunit 296298 #rows are 169311 output$download 1... #rows are 169311 output$download 2... `geom_smooth()` using formula = 'y ~ x' #rows are 169311 output$download 2... ggsave to file /tmp/RtmpMGu5ue/rawDiag-121da2cc4e6d8.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/RtmpMGu5ue/rawDiag-121da2cc4e6d8.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296299, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:52:59", createdby = "tobiasko", description = "input files:\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_005_S594252_IgGRabbit_rep2_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_010_S594251_IgGRabbit_rep1_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_007_S594249_NPHP3_rep1_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_008_S594253_Beads_rep1_Group_4.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_004_S594247_CEP290_rep1_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_009_S594248_CEP290_rep2_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_003_S594250_NPHP3_rep2_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_002_S594254_Beads_rep2_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2396509), list(`_classname` = "resource", `_id` = 2396508), list(`_classname` = "resource", `_id` = 2396507), list(`_classname` = "resource", `_id` = 2396506), list(`_classname` = "resource", `_id` = 2396505), list(`_classname` = "resource", `_id` = 2396504), list(`_classname` = "resource", `_id` = 2396503), list(`_classname` = "resource", `_id` = 2396502)), modified = "2023-11-20 09:52:59", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2396512, container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:53:01", createdby = "tobiasko", filechecksum = "d453ac6d9850ef820ebc952297379f1d", junk = "false", modified = "2023-11-20 09:53:01", modifiedby = "tobiasko", name = "WU296299-20231120-0952-rawDiag.pdf", relativepath = "container_33419/workunit_296299/WU296299-20231120-0952-rawDiag.pdf", size = "287411", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33419/workunit_296299/WU296299-20231120-0952-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33419/workunit_296299/WU296299-20231120-0952-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296299))) The current plot is available as workunit 296299 #rows are 169311 output$download 1... Warning: Removed 12 rows containing non-finite values (`stat_smooth()`). #rows are 169311 output$download 2... ggsave to file /tmp/RtmpMGu5ue/rawDiag-121da2145d4e17.pdf Warning: Removed 12 rows containing non-finite values (`stat_smooth()`). generated pdf /tmp/RtmpMGu5ue/rawDiag-121da2145d4e17.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296300, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:53:16", createdby = "tobiasko", description = "input files:\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_005_S594252_IgGRabbit_rep2_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_010_S594251_IgGRabbit_rep1_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_007_S594249_NPHP3_rep1_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_008_S594253_Beads_rep1_Group_4.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_004_S594247_CEP290_rep1_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_009_S594248_CEP290_rep2_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_003_S594250_NPHP3_rep2_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_002_S594254_Beads_rep2_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2396509), list(`_classname` = "resource", `_id` = 2396508), list(`_classname` = "resource", `_id` = 2396507), list(`_classname` = "resource", `_id` = 2396506), list(`_classname` = "resource", `_id` = 2396505), list(`_classname` = "resource", `_id` = 2396504), list(`_classname` = "resource", `_id` = 2396503), list(`_classname` = "resource", `_id` = 2396502)), modified = "2023-11-20 09:53:16", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2396513, container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:53:17", createdby = "tobiasko", filechecksum = "3e0195e0f99cc168daee671c1af1c05a", junk = "false", modified = "2023-11-20 09:53:17", modifiedby = "tobiasko", name = "WU296300-20231120-0953-rawDiag.pdf", relativepath = "container_33419/workunit_296300/WU296300-20231120-0953-rawDiag.pdf", size = "109459", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33419/workunit_296300/WU296300-20231120-0953-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33419/workunit_296300/WU296300-20231120-0953-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296300))) The current plot is available as workunit 296300 #rows are 169311 output$download 1... #rows are 169311 output$download 2... ggsave to file /tmp/RtmpMGu5ue/rawDiag-121da24383a917.pdf generated pdf /tmp/RtmpMGu5ue/rawDiag-121da24383a917.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296301, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:53:38", createdby = "tobiasko", description = "input files:\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_005_S594252_IgGRabbit_rep2_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_010_S594251_IgGRabbit_rep1_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_007_S594249_NPHP3_rep1_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_008_S594253_Beads_rep1_Group_4.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_004_S594247_CEP290_rep1_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_009_S594248_CEP290_rep2_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_003_S594250_NPHP3_rep2_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_002_S594254_Beads_rep2_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2396509), list(`_classname` = "resource", `_id` = 2396508), list(`_classname` = "resource", `_id` = 2396507), list(`_classname` = "resource", `_id` = 2396506), list(`_classname` = "resource", `_id` = 2396505), list(`_classname` = "resource", `_id` = 2396504), list(`_classname` = "resource", `_id` = 2396503), list(`_classname` = "resource", `_id` = 2396502)), modified = "2023-11-20 09:53:38", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2396514, container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:53:39", createdby = "tobiasko", filechecksum = "3bb7cb6245213375f956f284989d24e2", junk = "false", modified = "2023-11-20 09:53:39", modifiedby = "tobiasko", name = "WU296301-20231120-0953-rawDiag.pdf", relativepath = "container_33419/workunit_296301/WU296301-20231120-0953-rawDiag.pdf", size = "862828", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33419/workunit_296301/WU296301-20231120-0953-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33419/workunit_296301/WU296301-20231120-0953-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296301))) The current plot is available as workunit 296301 #rows are 169311 output$download 1... #rows are 169311 output$download 2... ggsave to file /tmp/RtmpMGu5ue/rawDiag-121da22d78637d.pdf generated pdf /tmp/RtmpMGu5ue/rawDiag-121da22d78637d.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296302, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:54:07", createdby = "tobiasko", description = "input files:\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_005_S594252_IgGRabbit_rep2_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_010_S594251_IgGRabbit_rep1_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_007_S594249_NPHP3_rep1_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_008_S594253_Beads_rep1_Group_4.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_004_S594247_CEP290_rep1_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_009_S594248_CEP290_rep2_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_003_S594250_NPHP3_rep2_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_002_S594254_Beads_rep2_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2396509), list(`_classname` = "resource", `_id` = 2396508), list(`_classname` = "resource", `_id` = 2396507), list(`_classname` = "resource", `_id` = 2396506), list(`_classname` = "resource", `_id` = 2396505), list(`_classname` = "resource", `_id` = 2396504), list(`_classname` = "resource", `_id` = 2396503), list(`_classname` = "resource", `_id` = 2396502)), modified = "2023-11-20 09:54:07", modifiedby = "tobiasko", name = "cycle time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2396515, container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:54:09", createdby = "tobiasko", filechecksum = "5093701b7a69a03951b6a216dc840445", junk = "false", modified = "2023-11-20 09:54:09", modifiedby = "tobiasko", name = "WU296302-20231120-0954-rawDiag.pdf", relativepath = "container_33419/workunit_296302/WU296302-20231120-0954-rawDiag.pdf", size = "131806", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33419/workunit_296302/WU296302-20231120-0954-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33419/workunit_296302/WU296302-20231120-0954-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296302))) The current plot is available as workunit 296302 #rows are 169311 output$download 1... #rows are 169311 output$download 2... ggsave to file /tmp/RtmpMGu5ue/rawDiag-121da258011604.pdf generated pdf /tmp/RtmpMGu5ue/rawDiag-121da258011604.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 296303, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:54:59", createdby = "tobiasko", description = "input files:\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_005_S594252_IgGRabbit_rep2_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_010_S594251_IgGRabbit_rep1_Group_3.raw\np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_007_S594249_NPHP3_rep1_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_008_S594253_Beads_rep1_Group_4.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_004_S594247_CEP290_rep1_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_009_S594248_CEP290_rep2_Group_1.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_003_S594250_NPHP3_rep2_Group_2.raw \np33419/Proteomics/QEXACTIVE_1/analytic_20231117/20231117_C33419_002_S594254_Beads_rep2_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2396509), list(`_classname` = "resource", `_id` = 2396508), list(`_classname` = "resource", `_id` = 2396507), list(`_classname` = "resource", `_id` = 2396506), list(`_classname` = "resource", `_id` = 2396505), list(`_classname` = "resource", `_id` = 2396504), list(`_classname` = "resource", `_id` = 2396503), list(`_classname` = "resource", `_id` = 2396502)), modified = "2023-11-20 09:54:59", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2396516, container = list(`_classname` = "order", `_id` = 33419), created = "2023-11-20 09:55:00", createdby = "tobiasko", filechecksum = "488d3bf8e0402323b2920a5a97162265", junk = "false", modified = "2023-11-20 09:55:00", modifiedby = "tobiasko", name = "WU296303-20231120-0954-rawDiag.pdf", relativepath = "container_33419/workunit_296303/WU296303-20231120-0954-rawDiag.pdf", size = "15144", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33419/workunit_296303/WU296303-20231120-0954-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33419/workunit_296303/WU296303-20231120-0954-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296303))) The current plot is available as workunit 296303 #rows are 169311 output$download 1... saving 'login and webservicepassword' ...