Listening on http://127.0.0.1:37969 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice Loading required package: PKI #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 /scratch/cpanse/ executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_020_S568448_PDTC_4_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_010_S568468_PDTC_7_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_017_S568446_PDTC_2_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_014_S568469_PDTC_8_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_018_S568447_PDTC_3_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_025_S568445_PDTC_1_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_035_S568467_PDTC_6_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_007_S568449_PDTC_5_Group_2_phospho.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values #rows are 414223 executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_025_S568445_PDTC_1_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_010_S568468_PDTC_7_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_018_S568447_PDTC_3_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_007_S568449_PDTC_5_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_014_S568469_PDTC_8_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_020_S568448_PDTC_4_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_017_S568446_PDTC_2_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_035_S568467_PDTC_6_Group_2_phospho.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values output$tic.basepeak <- renderPlot({ #rows are 414223 output$download 2... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 414223 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 414223 output$download 2... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_025_S568445_PDTC_1_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_010_S568468_PDTC_7_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_018_S568447_PDTC_3_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_007_S568449_PDTC_5_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_014_S568469_PDTC_8_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_020_S568448_PDTC_4_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_017_S568446_PDTC_2_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_035_S568467_PDTC_6_Group_2_phospho.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values output$tic.basepeak <- renderPlot({ #rows are 414223 output$download 2... ggsave to file /tmp/RtmpbYB4D9/rawDiag-817f5796ec8bb.pdf generated pdf /tmp/RtmpbYB4D9/rawDiag-817f5796ec8bb.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 296676, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:01:46", createdby = "antdit", description = "input files:\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_025_S568445_PDTC_1_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_017_S568446_PDTC_2_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_018_S568447_PDTC_3_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_020_S568448_PDTC_4_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_007_S568449_PDTC_5_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_035_S568467_PDTC_6_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_010_S568468_PDTC_7_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_014_S568469_PDTC_8_Group_2_phospho.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", modified = "2023-11-27 12:01:46", modifiedby = "antdit", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2401231, container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:01:47", createdby = "antdit", filechecksum = "612e0a8501773c6e7de137978e46131e", junk = "false", modified = "2023-11-27 12:01:47", modifiedby = "antdit", name = "WU296676-20231127-1201-rawDiag.pdf", relativepath = "container_32981/workunit_296676/WU296676-20231127-1201-rawDiag.pdf", size = "282009", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32981/workunit_296676/WU296676-20231127-1201-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32981/workunit_296676/WU296676-20231127-1201-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296676))) The current plot is available as workunit 296676 #rows are 414223 output$download 1... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 414223 output$download 2... #rows are 414223 output$download 2... #rows are 414223 output$download 2... ggsave to file /tmp/RtmpbYB4D9/rawDiag-817f5227480d3.pdf generated pdf /tmp/RtmpbYB4D9/rawDiag-817f5227480d3.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 296677, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:02:28", createdby = "antdit", description = "input files:\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_025_S568445_PDTC_1_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_017_S568446_PDTC_2_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_018_S568447_PDTC_3_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_020_S568448_PDTC_4_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_007_S568449_PDTC_5_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_035_S568467_PDTC_6_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_010_S568468_PDTC_7_Group_2_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_014_S568469_PDTC_8_Group_2_phospho.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", modified = "2023-11-27 12:02:28", modifiedby = "antdit", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2401232, container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:02:29", createdby = "antdit", filechecksum = "55d0a3256c8280f358b274c08735ccee", junk = "false", modified = "2023-11-27 12:02:29", modifiedby = "antdit", name = "WU296677-20231127-1202-rawDiag.pdf", relativepath = "container_32981/workunit_296677/WU296677-20231127-1202-rawDiag.pdf", size = "9281", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32981/workunit_296677/WU296677-20231127-1202-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32981/workunit_296677/WU296677-20231127-1202-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296677))) The current plot is available as workunit 296677 #rows are 414223 output$download 1... DEBUG renderPlot DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") plotQCs #rows are 414223 output$download 1... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 414223 output$download 2... #rows are 414223 output$download 2... #rows are 414223 output$download 2... `geom_smooth()` using formula = 'y ~ x' #rows are 414223 output$download 2... #rows are 414223 output$download 2... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 414223 output$download 2... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_027_S568471_OA_5_Group_1_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_009_S568441_OA_3_Group_1_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_034_S568439_OA_1_Group_1_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_002_S568472_OA_6_Group_1_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_006_S568473_OA_7_Group_1_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_033_S568470_OA_4_Group_1_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_003_S568440_OA_2_Group_1_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_012_S568474_OA_8_Group_1_phospho.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 415300 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 415300 output$download 2... ggsave to file /tmp/RtmpbYB4D9/rawDiag-817f528680856.pdf generated pdf /tmp/RtmpbYB4D9/rawDiag-817f528680856.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 296678, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:06:36", createdby = "antdit", description = "input files:\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_027_S568471_OA_5_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_009_S568441_OA_3_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_034_S568439_OA_1_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_002_S568472_OA_6_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_006_S568473_OA_7_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_033_S568470_OA_4_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_003_S568440_OA_2_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_012_S568474_OA_8_Group_1_phospho.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2385780), list(`_classname` = "resource", `_id` = 2385759)), modified = "2023-11-27 12:06:36", modifiedby = "antdit", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2401233, container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:06:38", createdby = "antdit", filechecksum = "fcf6ecbe8fc267da8e028e847d423e4f", junk = "false", modified = "2023-11-27 12:06:38", modifiedby = "antdit", name = "WU296678-20231127-1206-rawDiag.pdf", relativepath = "container_32981/workunit_296678/WU296678-20231127-1206-rawDiag.pdf", size = "301646", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32981/workunit_296678/WU296678-20231127-1206-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32981/workunit_296678/WU296678-20231127-1206-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296678))) The current plot is available as workunit 296678 #rows are 415300 output$download 1... #rows are 415300 output$download 2... ggsave to file /tmp/RtmpbYB4D9/rawDiag-817f554277c1b.pdf generated pdf /tmp/RtmpbYB4D9/rawDiag-817f554277c1b.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 296680, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:07:17", createdby = "antdit", description = "input files:\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_027_S568471_OA_5_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_009_S568441_OA_3_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_034_S568439_OA_1_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_002_S568472_OA_6_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_006_S568473_OA_7_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_033_S568470_OA_4_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_003_S568440_OA_2_Group_1_phospho.raw\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_012_S568474_OA_8_Group_1_phospho.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2385780), list(`_classname` = "resource", `_id` = 2385759)), modified = "2023-11-27 12:07:17", modifiedby = "antdit", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2401235, container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:07:19", createdby = "antdit", filechecksum = "1656a4860202aa4907a494515277b458", junk = "false", modified = "2023-11-27 12:07:19", modifiedby = "antdit", name = "WU296680-20231127-1207-rawDiag.pdf", relativepath = "container_32981/workunit_296680/WU296680-20231127-1207-rawDiag.pdf", size = "9297", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32981/workunit_296680/WU296680-20231127-1207-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32981/workunit_296680/WU296680-20231127-1207-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296680))) The current plot is available as workunit 296680 #rows are 415300 output$download 1... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_016_S568454_PTC_11_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_013_S568451_PTC_8_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_030_S568450_PTC_7_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_039_S568458_PTC_15_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_011_S568452_PTC_9_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_004_S568457_PTC_14_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_019_S568456_PTC_13_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_022_S568453_PTC_10_Group_2_phospho_rep.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_005_S568455_PTC_12_Group_2_phospho.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_024_S568459_PTC_16_Group_2_phospho.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values #rows are 579210 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 579210 output$download 2... ggsave to file /tmp/RtmpbYB4D9/rawDiag-817f52c3c9044.pdf generated pdf /tmp/RtmpbYB4D9/rawDiag-817f52c3c9044.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 296682, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:13:49", createdby = "antdit", description = "input files:\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_013_S568451_PTC_8_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_039_S568458_PTC_15_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_030_S568450_PTC_7_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_011_S568452_PTC_9_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_004_S568457_PTC_14_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_005_S568455_PTC_12_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_016_S568454_PTC_11_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_019_S568456_PTC_13_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_024_S568459_PTC_16_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_022_S568453_PTC_10_Group_2_phospho_rep.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", modified = "2023-11-27 12:13:49", modifiedby = "antdit", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2401237, container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:13:50", createdby = "antdit", filechecksum = "d123948ce9b12c71f0b012486645c506", junk = "false", modified = "2023-11-27 12:13:50", modifiedby = "antdit", name = "WU296682-20231127-1213-rawDiag.pdf", relativepath = "container_32981/workunit_296682/WU296682-20231127-1213-rawDiag.pdf", size = "374900", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32981/workunit_296682/WU296682-20231127-1213-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32981/workunit_296682/WU296682-20231127-1213-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296682))) The current plot is available as workunit 296682 #rows are 579210 output$download 1... #rows are 579210 output$download 2... #rows are 579210 output$download 2... #rows are 579210 output$download 2... ggsave to file /tmp/RtmpbYB4D9/rawDiag-817f5c989f1f.pdf generated pdf /tmp/RtmpbYB4D9/rawDiag-817f5c989f1f.pdf bfabricShiny::uploadResource ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 296686, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:15:13", createdby = "antdit", description = "input files:\np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_013_S568451_PTC_8_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_039_S568458_PTC_15_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_030_S568450_PTC_7_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_011_S568452_PTC_9_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_004_S568457_PTC_14_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_005_S568455_PTC_12_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_016_S568454_PTC_11_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_019_S568456_PTC_13_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_024_S568459_PTC_16_Group_2_phospho.raw \np32981/Proteomics/LUMOS_2/analytic_20231031/20231031_C32981_022_S568453_PTC_10_Group_2_phospho_rep.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.23.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", modified = "2023-11-27 12:15:13", modifiedby = "antdit", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2401241, container = list(`_classname` = "order", `_id` = 32981), created = "2023-11-27 12:15:14", createdby = "antdit", filechecksum = "b17068f30465c8c6a54da97cf7343052", junk = "false", modified = "2023-11-27 12:15:14", modifiedby = "antdit", name = "WU296686-20231127-1215-rawDiag.pdf", relativepath = "container_32981/workunit_296686/WU296686-20231127-1215-rawDiag.pdf", size = "11976", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_32981/workunit_296686/WU296686-20231127-1215-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_32981/workunit_296686/WU296686-20231127-1215-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 296686))) The current plot is available as workunit 296686 #rows are 579210 output$download 1... Execution halted