Listening on http://127.0.0.1:45439 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 262388 output$tic.basepeak <- renderPlot({ #rows are 262388 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/Rtmp69TsjF/rawDiag-2e9f701df47c3.pdf generated pdf /tmp/Rtmp69TsjF/rawDiag-2e9f701df47c3.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297360, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:34:56", createdby = "tobiasko", description = "input files:\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2407523), list(`_classname` = "resource", `_id` = 2407522), list(`_classname` = "resource", `_id` = 2407521), list(`_classname` = "resource", `_id` = 2407520), list(`_classname` = "resource", `_id` = 2407519), list(`_classname` = "resource", `_id` = 2407518), list(`_classname` = "resource", `_id` = 2407517), list(`_classname` = "resource", `_id` = 2407516), list(`_classname` = "resource", `_id` = 2407515), list( `_classname` = "resource", `_id` = 2407514)), modified = "2023-12-07 09:34:56", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2407591, container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:34:57", createdby = "tobiasko", filechecksum = "ba1446af1d6549ed1552a640005d0d77", junk = "false", modified = "2023-12-07 09:34:57", modifiedby = "tobiasko", name = "WU297360-20231207-0934-rawDiag.pdf", relativepath = "container_33611/workunit_297360/WU297360-20231207-0934-rawDiag.pdf", size = "373987", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33611/workunit_297360/WU297360-20231207-0934-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33611/workunit_297360/WU297360-20231207-0934-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297360))) The current plot is available as workunit 297360 #rows are 262388 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 262388 output$download 2... ggsave to file /tmp/Rtmp69TsjF/rawDiag-2e9f709e583ba.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp69TsjF/rawDiag-2e9f709e583ba.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297361, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:35:18", createdby = "tobiasko", description = "input files:\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2407523), list(`_classname` = "resource", `_id` = 2407522), list(`_classname` = "resource", `_id` = 2407521), list(`_classname` = "resource", `_id` = 2407520), list(`_classname` = "resource", `_id` = 2407519), list(`_classname` = "resource", `_id` = 2407518), list(`_classname` = "resource", `_id` = 2407517), list(`_classname` = "resource", `_id` = 2407516), list(`_classname` = "resource", `_id` = 2407515), list( `_classname` = "resource", `_id` = 2407514)), modified = "2023-12-07 09:35:18", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2407592, container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:35:19", createdby = "tobiasko", filechecksum = "4c7f22903940fa00966d1d0d45e95790", junk = "false", modified = "2023-12-07 09:35:19", modifiedby = "tobiasko", name = "WU297361-20231207-0935-rawDiag.pdf", relativepath = "container_33611/workunit_297361/WU297361-20231207-0935-rawDiag.pdf", size = "310591", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33611/workunit_297361/WU297361-20231207-0935-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33611/workunit_297361/WU297361-20231207-0935-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297361))) The current plot is available as workunit 297361 #rows are 262388 output$download 1... `geom_smooth()` using formula = 'y ~ x' #rows are 262388 output$download 2... ggsave to file /tmp/Rtmp69TsjF/rawDiag-2e9f70556196f9.pdf `geom_smooth()` using formula = 'y ~ x' generated pdf /tmp/Rtmp69TsjF/rawDiag-2e9f70556196f9.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297362, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:35:51", createdby = "tobiasko", description = "input files:\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2407523), list(`_classname` = "resource", `_id` = 2407522), list(`_classname` = "resource", `_id` = 2407521), list(`_classname` = "resource", `_id` = 2407520), list(`_classname` = "resource", `_id` = 2407519), list(`_classname` = "resource", `_id` = 2407518), list(`_classname` = "resource", `_id` = 2407517), list(`_classname` = "resource", `_id` = 2407516), list(`_classname` = "resource", `_id` = 2407515), list( `_classname` = "resource", `_id` = 2407514)), modified = "2023-12-07 09:35:51", modifiedby = "tobiasko", name = "cycle load plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2407593, container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:35:53", createdby = "tobiasko", filechecksum = "13d26ef18dee9719fc1eb6c8103f1ab8", junk = "false", modified = "2023-12-07 09:35:53", modifiedby = "tobiasko", name = "WU297362-20231207-0935-rawDiag.pdf", relativepath = "container_33611/workunit_297362/WU297362-20231207-0935-rawDiag.pdf", size = "798926", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33611/workunit_297362/WU297362-20231207-0935-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33611/workunit_297362/WU297362-20231207-0935-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297362))) The current plot is available as workunit 297362 #rows are 262388 output$download 1... #rows are 262388 output$download 2... ggsave to file /tmp/Rtmp69TsjF/rawDiag-2e9f7057e3f98f.pdf generated pdf /tmp/Rtmp69TsjF/rawDiag-2e9f7057e3f98f.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297363, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:36:06", createdby = "tobiasko", description = "input files:\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2407523), list(`_classname` = "resource", `_id` = 2407522), list(`_classname` = "resource", `_id` = 2407521), list(`_classname` = "resource", `_id` = 2407520), list(`_classname` = "resource", `_id` = 2407519), list(`_classname` = "resource", `_id` = 2407518), list(`_classname` = "resource", `_id` = 2407517), list(`_classname` = "resource", `_id` = 2407516), list(`_classname` = "resource", `_id` = 2407515), list( `_classname` = "resource", `_id` = 2407514)), modified = "2023-12-07 09:36:06", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2407594, container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:36:07", createdby = "tobiasko", filechecksum = "6dab4248e4a33289980ad94f44f257ef", junk = "false", modified = "2023-12-07 09:36:07", modifiedby = "tobiasko", name = "WU297363-20231207-0936-rawDiag.pdf", relativepath = "container_33611/workunit_297363/WU297363-20231207-0936-rawDiag.pdf", size = "206613", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33611/workunit_297363/WU297363-20231207-0936-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33611/workunit_297363/WU297363-20231207-0936-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297363))) The current plot is available as workunit 297363 #rows are 262388 output$download 1... #rows are 262388 output$download 2... ggsave to file /tmp/Rtmp69TsjF/rawDiag-2e9f7065a5be69.pdf generated pdf /tmp/Rtmp69TsjF/rawDiag-2e9f7065a5be69.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297364, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:36:31", createdby = "tobiasko", description = "input files:\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2407523), list(`_classname` = "resource", `_id` = 2407522), list(`_classname` = "resource", `_id` = 2407521), list(`_classname` = "resource", `_id` = 2407520), list(`_classname` = "resource", `_id` = 2407519), list(`_classname` = "resource", `_id` = 2407518), list(`_classname` = "resource", `_id` = 2407517), list(`_classname` = "resource", `_id` = 2407516), list(`_classname` = "resource", `_id` = 2407515), list( `_classname` = "resource", `_id` = 2407514)), modified = "2023-12-07 09:36:31", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2407595, container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:36:33", createdby = "tobiasko", filechecksum = "fcdd13a1eb0a810846be355996cb0dbd", junk = "false", modified = "2023-12-07 09:36:33", modifiedby = "tobiasko", name = "WU297364-20231207-0936-rawDiag.pdf", relativepath = "container_33611/workunit_297364/WU297364-20231207-0936-rawDiag.pdf", size = "1115243", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33611/workunit_297364/WU297364-20231207-0936-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33611/workunit_297364/WU297364-20231207-0936-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297364))) The current plot is available as workunit 297364 #rows are 262388 output$download 1... #rows are 262388 output$download 2... ggsave to file /tmp/Rtmp69TsjF/rawDiag-2e9f703503f09d.pdf generated pdf /tmp/Rtmp69TsjF/rawDiag-2e9f703503f09d.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297365, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:36:50", createdby = "tobiasko", description = "input files:\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2407523), list(`_classname` = "resource", `_id` = 2407522), list(`_classname` = "resource", `_id` = 2407521), list(`_classname` = "resource", `_id` = 2407520), list(`_classname` = "resource", `_id` = 2407519), list(`_classname` = "resource", `_id` = 2407518), list(`_classname` = "resource", `_id` = 2407517), list(`_classname` = "resource", `_id` = 2407516), list(`_classname` = "resource", `_id` = 2407515), list( `_classname` = "resource", `_id` = 2407514)), modified = "2023-12-07 09:36:50", modifiedby = "tobiasko", name = "cycle time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2407596, container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:36:51", createdby = "tobiasko", filechecksum = "f759b6a9e0cb9d36bbed822e22d61bfb", junk = "false", modified = "2023-12-07 09:36:52", modifiedby = "tobiasko", name = "WU297365-20231207-0936-rawDiag.pdf", relativepath = "container_33611/workunit_297365/WU297365-20231207-0936-rawDiag.pdf", size = "240373", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33611/workunit_297365/WU297365-20231207-0936-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33611/workunit_297365/WU297365-20231207-0936-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297365))) The current plot is available as workunit 297365 #rows are 262388 output$download 1... #rows are 262388 output$download 2... ggsave to file /tmp/Rtmp69TsjF/rawDiag-2e9f702c84ff48.pdf generated pdf /tmp/Rtmp69TsjF/rawDiag-2e9f702c84ff48.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297366, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:37:07", createdby = "tobiasko", description = "input files:\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2407523), list(`_classname` = "resource", `_id` = 2407522), list(`_classname` = "resource", `_id` = 2407521), list(`_classname` = "resource", `_id` = 2407520), list(`_classname` = "resource", `_id` = 2407519), list(`_classname` = "resource", `_id` = 2407518), list(`_classname` = "resource", `_id` = 2407517), list(`_classname` = "resource", `_id` = 2407516), list(`_classname` = "resource", `_id` = 2407515), list( `_classname` = "resource", `_id` = 2407514)), modified = "2023-12-07 09:37:07", modifiedby = "tobiasko", name = "charge state plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2407597, container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:37:08", createdby = "tobiasko", filechecksum = "f0e533cfde9227f5d46f4754786f7981", junk = "false", modified = "2023-12-07 09:37:08", modifiedby = "tobiasko", name = "WU297366-20231207-0937-rawDiag.pdf", relativepath = "container_33611/workunit_297366/WU297366-20231207-0937-rawDiag.pdf", size = "11806", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33611/workunit_297366/WU297366-20231207-0937-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33611/workunit_297366/WU297366-20231207-0937-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297366))) The current plot is available as workunit 297366 #rows are 262388 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 262388 output$download 2... ggsave to file /tmp/Rtmp69TsjF/rawDiag-2e9f7074e713b4.pdf generated pdf /tmp/Rtmp69TsjF/rawDiag-2e9f7074e713b4.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297367, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:37:25", createdby = "tobiasko", description = "input files:\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_004_S603871_T343V_NAC-CCCP_Group_8.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_010_S603868_WT_Emetine_Group_5.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_005_S603866_WT_NAC-CCCP_Group_3.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_007_S603867_WT_Nocodazole_Group_4.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_002_S603870_T343V_H2O2_Group_7.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_008_S603872_T343V_Nocodazole_Group_9.raw\np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_009_S603865_WT_H2O2_Group_2.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_003_S603873_T343V_Emetine_Group_10.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_006_S603864_WT_untreated_Group_1.raw \np33611/Proteomics/EXPLORIS_2/analytic_20231205/20231205_C33611_011_S603869_T343V_untreated_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2407523), list(`_classname` = "resource", `_id` = 2407522), list(`_classname` = "resource", `_id` = 2407521), list(`_classname` = "resource", `_id` = 2407520), list(`_classname` = "resource", `_id` = 2407519), list(`_classname` = "resource", `_id` = 2407518), list(`_classname` = "resource", `_id` = 2407517), list(`_classname` = "resource", `_id` = 2407516), list(`_classname` = "resource", `_id` = 2407515), list( `_classname` = "resource", `_id` = 2407514)), modified = "2023-12-07 09:37:25", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2407598, container = list(`_classname` = "order", `_id` = 33611), created = "2023-12-07 09:37:26", createdby = "tobiasko", filechecksum = "48f83352681e1d1c5991b79575bc98fe", junk = "false", modified = "2023-12-07 09:37:26", modifiedby = "tobiasko", name = "WU297367-20231207-0937-rawDiag.pdf", relativepath = "container_33611/workunit_297367/WU297367-20231207-0937-rawDiag.pdf", size = "61021", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33611/workunit_297367/WU297367-20231207-0937-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33611/workunit_297367/WU297367-20231207-0937-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297367))) The current plot is available as workunit 297367 #rows are 262388 output$download 1... DEBUG renderPlot plotQCs #rows are 262388 output$download 1... DEBUG renderPlot plotQCs #rows are 262388 output$download 1... Execution halted