Listening on http://127.0.0.1:33453 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 729055 output$tic.basepeak <- renderPlot({ #rows are 729055 output$download 2... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. output$tic.basepeak <- renderPlot({ #rows are 729055 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b195c5c77.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b195c5c77.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297542, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 08:58:39", createdby = "spfammatter", description = "input files:\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410651), list(`_classname` = "resource", `_id` = 2410646)), modified = "2023-12-11 08:58:39", modifiedby = "spfammatter", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410652, container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 08:58:41", createdby = "spfammatter", filechecksum = "927b7d6fe392e7138244bd3ae46a11ff", junk = "false", modified = "2023-12-11 08:58:41", modifiedby = "spfammatter", name = "WU297542-20231211-0858-rawDiag.pdf", relativepath = "container_33669/workunit_297542/WU297542-20231211-0858-rawDiag.pdf", size = "124293", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33669/workunit_297542/WU297542-20231211-0858-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33669/workunit_297542/WU297542-20231211-0858-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297542))) The current plot is available as workunit 297542 #rows are 729055 output$download 1... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 729055 output$download 2... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#840] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$xic 1: runApp Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#840] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$xic 1: runApp executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 729055 output$tic.basepeak <- renderPlot({ #rows are 729055 output$download 2... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231207_C33626_008_S603968_Sample3_MCR_Recombinant_protein.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 15997 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b774555a4.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b774555a4.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297549, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:16:09", createdby = "tobiasko", description = "input files:\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410651), list(`_classname` = "resource", `_id` = 2410650), list(`_classname` = "resource", `_id` = 2410649), list(`_classname` = "resource", `_id` = 2410648), list(`_classname` = "resource", `_id` = 2410647), list(`_classname` = "resource", `_id` = 2410646), list(`_classname` = "resource", `_id` = 2410645), list(`_classname` = "resource", `_id` = 2410644)), modified = "2023-12-11 09:16:09", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410724, container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:16:11", createdby = "tobiasko", filechecksum = "7698bd7de20d46c3526585cf207ee244", junk = "false", modified = "2023-12-11 09:16:11", modifiedby = "tobiasko", name = "WU297549-20231211-0916-rawDiag.pdf", relativepath = "container_33669/workunit_297549/WU297549-20231211-0916-rawDiag.pdf", size = "131770", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33669/workunit_297549/WU297549-20231211-0916-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33669/workunit_297549/WU297549-20231211-0916-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297549))) The current plot is available as workunit 297549 #rows are 729055 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 729055 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b1118dbbe.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b1118dbbe.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297550, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:16:29", createdby = "tobiasko", description = "input files:\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410651), list(`_classname` = "resource", `_id` = 2410650), list(`_classname` = "resource", `_id` = 2410649), list(`_classname` = "resource", `_id` = 2410648), list(`_classname` = "resource", `_id` = 2410647), list(`_classname` = "resource", `_id` = 2410646), list(`_classname` = "resource", `_id` = 2410645), list(`_classname` = "resource", `_id` = 2410644)), modified = "2023-12-11 09:16:29", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410725, container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:16:30", createdby = "tobiasko", filechecksum = "c98ab0335f66f1b7de27dd9909a25c62", junk = "false", modified = "2023-12-11 09:16:30", modifiedby = "tobiasko", name = "WU297550-20231211-0916-rawDiag.pdf", relativepath = "container_33669/workunit_297550/WU297550-20231211-0916-rawDiag.pdf", size = "204850", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33669/workunit_297550/WU297550-20231211-0916-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33669/workunit_297550/WU297550-20231211-0916-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297550))) The current plot is available as workunit 297550 #rows are 729055 output$download 1... Warning in max(res$n) : no non-missing arguments to max; returning -Inf Warning: Error in combine_vars: Faceting variables must have at least one value 184: 183: signalCondition 182: signal_abort 181: rlang::abort 180: cli::cli_abort 179: combine_vars 178: compute_layout 177: self$facet$compute_layout 176: setup 175: layout$setup 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cycle.load 1: runApp #rows are 729055 output$download 2... #rows are 729055 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 15997 output$download 2... #rows are 729055 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b6792db05.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b6792db05.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297553, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:17:18", createdby = "tobiasko", description = "input files:\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410651), list(`_classname` = "resource", `_id` = 2410650), list(`_classname` = "resource", `_id` = 2410649), list(`_classname` = "resource", `_id` = 2410648), list(`_classname` = "resource", `_id` = 2410647), list(`_classname` = "resource", `_id` = 2410646), list(`_classname` = "resource", `_id` = 2410645), list(`_classname` = "resource", `_id` = 2410644)), modified = "2023-12-11 09:17:18", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410731, container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:17:19", createdby = "tobiasko", filechecksum = "cf66d97c61a46d402cf087b644c7286d", junk = "false", modified = "2023-12-11 09:17:19", modifiedby = "tobiasko", name = "WU297553-20231211-0917-rawDiag.pdf", relativepath = "container_33669/workunit_297553/WU297553-20231211-0917-rawDiag.pdf", size = "65038", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33669/workunit_297553/WU297553-20231211-0917-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33669/workunit_297553/WU297553-20231211-0917-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297553))) The current plot is available as workunit 297553 #rows are 729055 output$download 1... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b164ade4a.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b164ade4a.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297554, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33626), created = "2023-12-11 09:17:29", createdby = "spfammatter", description = "input files:\np33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231207_C33626_008_S603968_Sample3_MCR_Recombinant_protein.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410421)), modified = "2023-12-11 09:17:29", modifiedby = "spfammatter", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410732, container = list(`_classname` = "order", `_id` = 33626), created = "2023-12-11 09:17:30", createdby = "spfammatter", filechecksum = "b1afcb09459247de7923da17c5bbae36", junk = "false", modified = "2023-12-11 09:17:30", modifiedby = "spfammatter", name = "WU297554-20231211-0917-rawDiag.pdf", relativepath = "container_33626/workunit_297554/WU297554-20231211-0917-rawDiag.pdf", size = "67769", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33626/workunit_297554/WU297554-20231211-0917-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33626/workunit_297554/WU297554-20231211-0917-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297554))) The current plot is available as workunit 297554 #rows are 15997 output$download 1... #rows are 729055 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 15997 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b766931.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b766931.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297556, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:18:16", createdby = "tobiasko", description = "input files:\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410651), list(`_classname` = "resource", `_id` = 2410650), list(`_classname` = "resource", `_id` = 2410649), list(`_classname` = "resource", `_id` = 2410648), list(`_classname` = "resource", `_id` = 2410647), list(`_classname` = "resource", `_id` = 2410646), list(`_classname` = "resource", `_id` = 2410645), list(`_classname` = "resource", `_id` = 2410644)), modified = "2023-12-11 09:18:16", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410739, container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:18:18", createdby = "tobiasko", filechecksum = "754af8fde544416174d2f48950a0f901", junk = "false", modified = "2023-12-11 09:18:18", modifiedby = "tobiasko", name = "WU297556-20231211-0918-rawDiag.pdf", relativepath = "container_33669/workunit_297556/WU297556-20231211-0918-rawDiag.pdf", size = "1338750", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33669/workunit_297556/WU297556-20231211-0918-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33669/workunit_297556/WU297556-20231211-0918-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297556))) The current plot is available as workunit 297556 #rows are 729055 output$download 1... #rows are 729055 output$download 2... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231207_C33626_002_S603966_Sample1_ACC1_Recombinant_protein.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231207_C33626_005_S603967_Sample2_ACC2_Recombinant_protein.raw qc ... missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed LMmZCorrectionppm to LMCorrection missing column name(s): MasterScanNumber, LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode MasterScanNumber calculated renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 32470 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b53374d8b.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b53374d8b.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297557, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:18:43", createdby = "tobiasko", description = "input files:\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410651), list(`_classname` = "resource", `_id` = 2410650), list(`_classname` = "resource", `_id` = 2410649), list(`_classname` = "resource", `_id` = 2410648), list(`_classname` = "resource", `_id` = 2410647), list(`_classname` = "resource", `_id` = 2410646), list(`_classname` = "resource", `_id` = 2410645), list(`_classname` = "resource", `_id` = 2410644)), modified = "2023-12-11 09:18:43", modifiedby = "tobiasko", name = "precursor heatmap plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410740, container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:18:44", createdby = "tobiasko", filechecksum = "f29d507a0931b2be235a55121645970d", junk = "false", modified = "2023-12-11 09:18:44", modifiedby = "tobiasko", name = "WU297557-20231211-0918-rawDiag.pdf", relativepath = "container_33669/workunit_297557/WU297557-20231211-0918-rawDiag.pdf", size = "910555", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33669/workunit_297557/WU297557-20231211-0918-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33669/workunit_297557/WU297557-20231211-0918-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297557))) The current plot is available as workunit 297557 #rows are 729055 output$download 1... #rows are 729055 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b6c93aa02.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b6c93aa02.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297559, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:19:06", createdby = "tobiasko", description = "input files:\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_003_S605315_231206_AP_GFP_Group_1.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_008_S605319_231206_PL_GFP_Group_5.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_002_S605317_231206_AP_CIAO3_Group_3.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_009_S605318_231206_AP_MMS19_Group_4.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_004_S605316_231206_AP_CIAO2B_Group_2.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_010_S605321_231206_PL_CIAO3_Group_7.raw \np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_011_S605320_231206_PL_CIAO2B_Group_6.raw\np33669/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33669_005_S605322_231206_PL_MMS19_Group_8.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410651), list(`_classname` = "resource", `_id` = 2410650), list(`_classname` = "resource", `_id` = 2410649), list(`_classname` = "resource", `_id` = 2410648), list(`_classname` = "resource", `_id` = 2410647), list(`_classname` = "resource", `_id` = 2410646), list(`_classname` = "resource", `_id` = 2410645), list(`_classname` = "resource", `_id` = 2410644)), modified = "2023-12-11 09:19:06", modifiedby = "tobiasko", name = "cycle time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410743, container = list(`_classname` = "order", `_id` = 33669), created = "2023-12-11 09:19:08", createdby = "tobiasko", filechecksum = "7559b2820fcc63a2d32c41a27cd07560", junk = "false", modified = "2023-12-11 09:19:08", modifiedby = "tobiasko", name = "WU297559-20231211-0919-rawDiag.pdf", relativepath = "container_33669/workunit_297559/WU297559-20231211-0919-rawDiag.pdf", size = "88107", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33669/workunit_297559/WU297559-20231211-0919-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33669/workunit_297559/WU297559-20231211-0919-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297559))) The current plot is available as workunit 297559 #rows are 729055 output$download 1... #rows are 729055 output$download 2... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 729055 output$download 2... DEBUG renderPlot plotQCs #rows are 729055 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 32470 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b30ba2bab.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b30ba2bab.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297561, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33626), created = "2023-12-11 09:21:06", createdby = "spfammatter", description = "input files:\np33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231207_C33626_002_S603966_Sample1_ACC1_Recombinant_protein.raw\np33626/Proteomics/QEXACTIVE_1/analytic_20231206/20231207_C33626_005_S603967_Sample2_ACC2_Recombinant_protein.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410417), list(`_classname` = "resource", `_id` = 2410416)), modified = "2023-12-11 09:21:06", modifiedby = "spfammatter", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410756, container = list(`_classname` = "order", `_id` = 33626), created = "2023-12-11 09:21:08", createdby = "spfammatter", filechecksum = "731f5ce690eeddcf9b00f43fa116c2c0", junk = "false", modified = "2023-12-11 09:21:08", modifiedby = "spfammatter", name = "WU297561-20231211-0921-rawDiag.pdf", relativepath = "container_33626/workunit_297561/WU297561-20231211-0921-rawDiag.pdf", size = "140038", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33626/workunit_297561/WU297561-20231211-0921-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33626/workunit_297561/WU297561-20231211-0921-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297561))) The current plot is available as workunit 297561 #rows are 32470 output$download 1... output$tic.basepeak <- renderPlot({ #rows are 32470 output$download 2... DEBUG renderPlot Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#643] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$qc 1: runApp DEBUG renderPlot Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#643] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$qc 1: runApp DEBUG renderPlot Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#643] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$qc 1: runApp executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_003_S605426_297_5_FGF7_IPSTAT2_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_005_S605429_297_1_CTRL_IPIgG_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_013_S605425_297_3_CTRL_IPSTAT2_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_010_S605428_297_7_FGF7_IPSTAT2_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_004_S605424_296_2_CTRL_IPSTAT2_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_015_S605430_297_2_CTRL_IPIgG_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_012_S605427_297_6_FGF7_IPSTAT2_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_006_S605431_297_3_CTRL_IPIgG_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_002_S605434_297_7_FGF7_IPIgG_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_011_S605423_297_1_CTRL_IPSTAT2_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_014_S605433_297_6_FGF7_IPIgG_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_007_S605432_297_5_FGF7_IPIgG_Group_4.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 1090789 output$download 2... output$tic.basepeak <- renderPlot({ #rows are 1090789 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235bee7a54a.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235bee7a54a.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297572, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:40:48", createdby = "tobiasko", description = "input files:\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_010_S605428_297_7_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_013_S605425_297_3_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_002_S605434_297_7_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_004_S605424_296_2_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_003_S605426_297_5_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_012_S605427_297_6_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_006_S605431_297_3_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_015_S605430_297_2_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_005_S605429_297_1_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_011_S605423_297_1_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_014_S605433_297_6_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_007_S605432_297_5_FGF7_IPIgG_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410665), list(`_classname` = "resource", `_id` = 2410664), list(`_classname` = "resource", `_id` = 2410663), list(`_classname` = "resource", `_id` = 2410662), list(`_classname` = "resource", `_id` = 2410661), list(`_classname` = "resource", `_id` = 2410660), list(`_classname` = "resource", `_id` = 2410659), list(`_classname` = "resource", `_id` = 2410658), list(`_classname` = "resource", `_id` = 2410657), list( `_classname` = "resource", `_id` = 2410656), list(`_classname` = "resource", `_id` = 2410655), list(`_classname` = "resource", `_id` = 2410654)), modified = "2023-12-11 09:40:48", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410781, container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:40:49", createdby = "tobiasko", filechecksum = "e2157086552746fdbf0fa040ae4edeb1", junk = "false", modified = "2023-12-11 09:40:49", modifiedby = "tobiasko", name = "WU297572-20231211-0940-rawDiag.pdf", relativepath = "container_33676/workunit_297572/WU297572-20231211-0940-rawDiag.pdf", size = "196759", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33676/workunit_297572/WU297572-20231211-0940-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33676/workunit_297572/WU297572-20231211-0940-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297572))) The current plot is available as workunit 297572 #rows are 1090789 output$download 1... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 1090789 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b3c4588e5.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b3c4588e5.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297573, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:41:45", createdby = "tobiasko", description = "input files:\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_010_S605428_297_7_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_013_S605425_297_3_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_002_S605434_297_7_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_004_S605424_296_2_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_003_S605426_297_5_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_012_S605427_297_6_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_006_S605431_297_3_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_015_S605430_297_2_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_005_S605429_297_1_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_011_S605423_297_1_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_014_S605433_297_6_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_007_S605432_297_5_FGF7_IPIgG_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410665), list(`_classname` = "resource", `_id` = 2410664), list(`_classname` = "resource", `_id` = 2410663), list(`_classname` = "resource", `_id` = 2410662), list(`_classname` = "resource", `_id` = 2410661), list(`_classname` = "resource", `_id` = 2410660), list(`_classname` = "resource", `_id` = 2410659), list(`_classname` = "resource", `_id` = 2410658), list(`_classname` = "resource", `_id` = 2410657), list( `_classname` = "resource", `_id` = 2410656), list(`_classname` = "resource", `_id` = 2410655), list(`_classname` = "resource", `_id` = 2410654)), modified = "2023-12-11 09:41:45", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410782, container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:41:46", createdby = "tobiasko", filechecksum = "35b6b8f37a25012185ad02179d6430d0", junk = "false", modified = "2023-12-11 09:41:46", modifiedby = "tobiasko", name = "WU297573-20231211-0941-rawDiag.pdf", relativepath = "container_33676/workunit_297573/WU297573-20231211-0941-rawDiag.pdf", size = "308331", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33676/workunit_297573/WU297573-20231211-0941-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33676/workunit_297573/WU297573-20231211-0941-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297573))) The current plot is available as workunit 297573 #rows are 1090789 output$download 1... #rows are 1090789 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b14491ebd.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b14491ebd.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297574, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:42:13", createdby = "tobiasko", description = "input files:\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_010_S605428_297_7_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_013_S605425_297_3_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_002_S605434_297_7_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_004_S605424_296_2_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_003_S605426_297_5_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_012_S605427_297_6_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_006_S605431_297_3_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_015_S605430_297_2_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_005_S605429_297_1_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_011_S605423_297_1_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_014_S605433_297_6_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_007_S605432_297_5_FGF7_IPIgG_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410665), list(`_classname` = "resource", `_id` = 2410664), list(`_classname` = "resource", `_id` = 2410663), list(`_classname` = "resource", `_id` = 2410662), list(`_classname` = "resource", `_id` = 2410661), list(`_classname` = "resource", `_id` = 2410660), list(`_classname` = "resource", `_id` = 2410659), list(`_classname` = "resource", `_id` = 2410658), list(`_classname` = "resource", `_id` = 2410657), list( `_classname` = "resource", `_id` = 2410656), list(`_classname` = "resource", `_id` = 2410655), list(`_classname` = "resource", `_id` = 2410654)), modified = "2023-12-11 09:42:13", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410783, container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:42:14", createdby = "tobiasko", filechecksum = "5180faef78a4770034454e8ea04ed8e8", junk = "false", modified = "2023-12-11 09:42:14", modifiedby = "tobiasko", name = "WU297574-20231211-0942-rawDiag.pdf", relativepath = "container_33676/workunit_297574/WU297574-20231211-0942-rawDiag.pdf", size = "93933", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33676/workunit_297574/WU297574-20231211-0942-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33676/workunit_297574/WU297574-20231211-0942-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297574))) The current plot is available as workunit 297574 #rows are 1090789 output$download 1... #rows are 1090789 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b3f9b626.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b3f9b626.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297575, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:44:01", createdby = "tobiasko", description = "input files:\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_010_S605428_297_7_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_013_S605425_297_3_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_002_S605434_297_7_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_004_S605424_296_2_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_003_S605426_297_5_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_012_S605427_297_6_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_006_S605431_297_3_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_015_S605430_297_2_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_005_S605429_297_1_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_011_S605423_297_1_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_014_S605433_297_6_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_007_S605432_297_5_FGF7_IPIgG_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410665), list(`_classname` = "resource", `_id` = 2410664), list(`_classname` = "resource", `_id` = 2410663), list(`_classname` = "resource", `_id` = 2410662), list(`_classname` = "resource", `_id` = 2410661), list(`_classname` = "resource", `_id` = 2410660), list(`_classname` = "resource", `_id` = 2410659), list(`_classname` = "resource", `_id` = 2410658), list(`_classname` = "resource", `_id` = 2410657), list( `_classname` = "resource", `_id` = 2410656), list(`_classname` = "resource", `_id` = 2410655), list(`_classname` = "resource", `_id` = 2410654)), modified = "2023-12-11 09:44:01", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410784, container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:44:03", createdby = "tobiasko", filechecksum = "9e7ec3bfa0c5ffd81f6932f81c892827", junk = "false", modified = "2023-12-11 09:44:03", modifiedby = "tobiasko", name = "WU297575-20231211-0944-rawDiag.pdf", relativepath = "container_33676/workunit_297575/WU297575-20231211-0944-rawDiag.pdf", size = "2038087", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33676/workunit_297575/WU297575-20231211-0944-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33676/workunit_297575/WU297575-20231211-0944-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297575))) The current plot is available as workunit 297575 #rows are 1090789 output$download 1... #rows are 1090789 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b4701f57.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b4701f57.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297576, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:44:32", createdby = "tobiasko", description = "input files:\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_010_S605428_297_7_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_013_S605425_297_3_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_002_S605434_297_7_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_004_S605424_296_2_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_003_S605426_297_5_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_012_S605427_297_6_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_006_S605431_297_3_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_015_S605430_297_2_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_005_S605429_297_1_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_011_S605423_297_1_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_014_S605433_297_6_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_007_S605432_297_5_FGF7_IPIgG_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410665), list(`_classname` = "resource", `_id` = 2410664), list(`_classname` = "resource", `_id` = 2410663), list(`_classname` = "resource", `_id` = 2410662), list(`_classname` = "resource", `_id` = 2410661), list(`_classname` = "resource", `_id` = 2410660), list(`_classname` = "resource", `_id` = 2410659), list(`_classname` = "resource", `_id` = 2410658), list(`_classname` = "resource", `_id` = 2410657), list( `_classname` = "resource", `_id` = 2410656), list(`_classname` = "resource", `_id` = 2410655), list(`_classname` = "resource", `_id` = 2410654)), modified = "2023-12-11 09:44:32", modifiedby = "tobiasko", name = "precursor heatmap plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410785, container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:44:33", createdby = "tobiasko", filechecksum = "d20211454c1d0e06337e6215b4557bf5", junk = "false", modified = "2023-12-11 09:44:33", modifiedby = "tobiasko", name = "WU297576-20231211-0944-rawDiag.pdf", relativepath = "container_33676/workunit_297576/WU297576-20231211-0944-rawDiag.pdf", size = "1337154", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33676/workunit_297576/WU297576-20231211-0944-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33676/workunit_297576/WU297576-20231211-0944-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297576))) The current plot is available as workunit 297576 #rows are 1090789 output$download 1... #rows are 1090789 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b57a76ce2.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b57a76ce2.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297577, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:44:58", createdby = "tobiasko", description = "input files:\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_010_S605428_297_7_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_013_S605425_297_3_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_002_S605434_297_7_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_004_S605424_296_2_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_003_S605426_297_5_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_012_S605427_297_6_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_006_S605431_297_3_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_015_S605430_297_2_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_005_S605429_297_1_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_011_S605423_297_1_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_014_S605433_297_6_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_007_S605432_297_5_FGF7_IPIgG_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410665), list(`_classname` = "resource", `_id` = 2410664), list(`_classname` = "resource", `_id` = 2410663), list(`_classname` = "resource", `_id` = 2410662), list(`_classname` = "resource", `_id` = 2410661), list(`_classname` = "resource", `_id` = 2410660), list(`_classname` = "resource", `_id` = 2410659), list(`_classname` = "resource", `_id` = 2410658), list(`_classname` = "resource", `_id` = 2410657), list( `_classname` = "resource", `_id` = 2410656), list(`_classname` = "resource", `_id` = 2410655), list(`_classname` = "resource", `_id` = 2410654)), modified = "2023-12-11 09:44:58", modifiedby = "tobiasko", name = "cycle time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410786, container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:44:59", createdby = "tobiasko", filechecksum = "829812aa2df4cc00d40fd2a2a4c8631a", junk = "false", modified = "2023-12-11 09:44:59", modifiedby = "tobiasko", name = "WU297577-20231211-0944-rawDiag.pdf", relativepath = "container_33676/workunit_297577/WU297577-20231211-0944-rawDiag.pdf", size = "126829", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33676/workunit_297577/WU297577-20231211-0944-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33676/workunit_297577/WU297577-20231211-0944-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297577))) The current plot is available as workunit 297577 #rows are 1090789 output$download 1... Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 1090789 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b443b16e4.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b443b16e4.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297578, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:45:29", createdby = "tobiasko", description = "input files:\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_010_S605428_297_7_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_013_S605425_297_3_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_002_S605434_297_7_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_004_S605424_296_2_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_003_S605426_297_5_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_012_S605427_297_6_FGF7_IPSTAT2_Group_2.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_006_S605431_297_3_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_015_S605430_297_2_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_005_S605429_297_1_CTRL_IPIgG_Group_3.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_011_S605423_297_1_CTRL_IPSTAT2_Group_1.raw\np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_014_S605433_297_6_FGF7_IPIgG_Group_4.raw \np33676/Proteomics/EXPLORIS_2/analytic_20231210/20231208_C33676_007_S605432_297_5_FGF7_IPIgG_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410665), list(`_classname` = "resource", `_id` = 2410664), list(`_classname` = "resource", `_id` = 2410663), list(`_classname` = "resource", `_id` = 2410662), list(`_classname` = "resource", `_id` = 2410661), list(`_classname` = "resource", `_id` = 2410660), list(`_classname` = "resource", `_id` = 2410659), list(`_classname` = "resource", `_id` = 2410658), list(`_classname` = "resource", `_id` = 2410657), list( `_classname` = "resource", `_id` = 2410656), list(`_classname` = "resource", `_id` = 2410655), list(`_classname` = "resource", `_id` = 2410654)), modified = "2023-12-11 09:45:29", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2410787, container = list(`_classname` = "order", `_id` = 33676), created = "2023-12-11 09:45:30", createdby = "tobiasko", filechecksum = "9c19f17071ddc752f1e6e8f77909b5d0", junk = "false", modified = "2023-12-11 09:45:30", modifiedby = "tobiasko", name = "WU297578-20231211-0945-rawDiag.pdf", relativepath = "container_33676/workunit_297578/WU297578-20231211-0945-rawDiag.pdf", size = "51968", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33676/workunit_297578/WU297578-20231211-0945-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33676/workunit_297578/WU297578-20231211-0945-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297578))) The current plot is available as workunit 297578 #rows are 1090789 output$download 1... DEBUG renderPlot plotQCs #rows are 1090789 output$download 1... DEBUG renderPlot Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#643] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$qc 1: runApp DEBUG renderPlot Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#643] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$qc 1: runApp DEBUG renderPlot Warning: Error in if: argument is of length zero 168: renderPlot [/usr/local/lib/R/site-library/bfabricShiny/shiny/bfabric_rawDiag/server.R#643] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$qc 1: runApp executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_014_S604611_wt_S_2_WT_S.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_015_S604606_mNLS_L_1_mNLS_L.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_004_S604613_mNLS_S_2_mNLS_S.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_009_S604609_GFP_L_2_GFP.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_002_S604607_mNLS_L_2_mNLS_L.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_016_S604605_wt_L_2_WT_L.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_010_S604604_wt_L_1_WT_L.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_017_S604608_GFP_L_1_GFP.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_011_S604614_wt_L_high_1_WT_L_high.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_005_S604612_mNLS_S_1_mNLS_S.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_008_S604610_wt_S_1_WT_S.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_003_S604615_wt_L_high_2_WT_L_high.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 1089801 output$download 1... output$tic.basepeak <- renderPlot({ #rows are 1089801 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b30ba1c2d.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b30ba1c2d.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297586, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:12:21", createdby = "tobiasko", description = "input files:\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_016_S604605_wt_L_2_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_010_S604604_wt_L_1_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_009_S604609_GFP_L_2_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_015_S604606_mNLS_L_1_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_004_S604613_mNLS_S_2_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_002_S604607_mNLS_L_2_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_014_S604611_wt_S_2_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_017_S604608_GFP_L_1_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_011_S604614_wt_L_high_1_WT_L_high.raw\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_005_S604612_mNLS_S_1_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_008_S604610_wt_S_1_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_003_S604615_wt_L_high_2_WT_L_high.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410677), list(`_classname` = "resource", `_id` = 2410676), list(`_classname` = "resource", `_id` = 2410675), list(`_classname` = "resource", `_id` = 2410674), list(`_classname` = "resource", `_id` = 2410673), list(`_classname` = "resource", `_id` = 2410672), list(`_classname` = "resource", `_id` = 2410671), list(`_classname` = "resource", `_id` = 2410670), list(`_classname` = "resource", `_id` = 2410669), list( `_classname` = "resource", `_id` = 2410668), list(`_classname` = "resource", `_id` = 2410667), list(`_classname` = "resource", `_id` = 2410666)), modified = "2023-12-11 10:12:21", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2411175, container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:12:23", createdby = "tobiasko", filechecksum = "4f73e4a4f0ae68a4a197fb3c07a8356f", junk = "false", modified = "2023-12-11 10:12:23", modifiedby = "tobiasko", name = "WU297586-20231211-1012-rawDiag.pdf", relativepath = "container_33648/workunit_297586/WU297586-20231211-1012-rawDiag.pdf", size = "191019", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33648/workunit_297586/WU297586-20231211-1012-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33648/workunit_297586/WU297586-20231211-1012-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297586))) The current plot is available as workunit 297586 #rows are 1089801 output$download 1... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 1089801 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b77740d89.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b77740d89.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297587, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:12:46", createdby = "tobiasko", description = "input files:\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_016_S604605_wt_L_2_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_010_S604604_wt_L_1_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_009_S604609_GFP_L_2_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_015_S604606_mNLS_L_1_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_004_S604613_mNLS_S_2_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_002_S604607_mNLS_L_2_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_014_S604611_wt_S_2_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_017_S604608_GFP_L_1_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_011_S604614_wt_L_high_1_WT_L_high.raw\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_005_S604612_mNLS_S_1_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_008_S604610_wt_S_1_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_003_S604615_wt_L_high_2_WT_L_high.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410677), list(`_classname` = "resource", `_id` = 2410676), list(`_classname` = "resource", `_id` = 2410675), list(`_classname` = "resource", `_id` = 2410674), list(`_classname` = "resource", `_id` = 2410673), list(`_classname` = "resource", `_id` = 2410672), list(`_classname` = "resource", `_id` = 2410671), list(`_classname` = "resource", `_id` = 2410670), list(`_classname` = "resource", `_id` = 2410669), list( `_classname` = "resource", `_id` = 2410668), list(`_classname` = "resource", `_id` = 2410667), list(`_classname` = "resource", `_id` = 2410666)), modified = "2023-12-11 10:12:46", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2411184, container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:12:48", createdby = "tobiasko", filechecksum = "c0e4783ece6bc3aa8e7653ed39309cf2", junk = "false", modified = "2023-12-11 10:12:48", modifiedby = "tobiasko", name = "WU297587-20231211-1012-rawDiag.pdf", relativepath = "container_33648/workunit_297587/WU297587-20231211-1012-rawDiag.pdf", size = "308820", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33648/workunit_297587/WU297587-20231211-1012-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33648/workunit_297587/WU297587-20231211-1012-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297587))) The current plot is available as workunit 297587 #rows are 1089801 output$download 1... Warning in max(res$n) : no non-missing arguments to max; returning -Inf Warning: Error in combine_vars: Faceting variables must have at least one value 184: 183: signalCondition 182: signal_abort 181: rlang::abort 180: cli::cli_abort 179: combine_vars 178: compute_layout 177: self$facet$compute_layout 176: setup 175: layout$setup 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cycle.load 1: runApp #rows are 1089801 output$download 2... #rows are 1089801 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b1a79cfc6.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b1a79cfc6.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297590, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:22:14", createdby = "tobiasko", description = "input files:\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_016_S604605_wt_L_2_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_010_S604604_wt_L_1_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_009_S604609_GFP_L_2_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_015_S604606_mNLS_L_1_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_004_S604613_mNLS_S_2_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_002_S604607_mNLS_L_2_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_014_S604611_wt_S_2_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_017_S604608_GFP_L_1_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_011_S604614_wt_L_high_1_WT_L_high.raw\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_005_S604612_mNLS_S_1_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_008_S604610_wt_S_1_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_003_S604615_wt_L_high_2_WT_L_high.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410677), list(`_classname` = "resource", `_id` = 2410676), list(`_classname` = "resource", `_id` = 2410675), list(`_classname` = "resource", `_id` = 2410674), list(`_classname` = "resource", `_id` = 2410673), list(`_classname` = "resource", `_id` = 2410672), list(`_classname` = "resource", `_id` = 2410671), list(`_classname` = "resource", `_id` = 2410670), list(`_classname` = "resource", `_id` = 2410669), list( `_classname` = "resource", `_id` = 2410668), list(`_classname` = "resource", `_id` = 2410667), list(`_classname` = "resource", `_id` = 2410666)), modified = "2023-12-11 10:22:14", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2411402, container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:22:15", createdby = "tobiasko", filechecksum = "8d741d4963a2f62bbbf516dbcd7ed835", junk = "false", modified = "2023-12-11 10:22:15", modifiedby = "tobiasko", name = "WU297590-20231211-1022-rawDiag.pdf", relativepath = "container_33648/workunit_297590/WU297590-20231211-1022-rawDiag.pdf", size = "94774", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33648/workunit_297590/WU297590-20231211-1022-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33648/workunit_297590/WU297590-20231211-1022-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297590))) The current plot is available as workunit 297590 #rows are 1089801 output$download 1... #rows are 1089801 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b74c99953.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b74c99953.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297592, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:23:00", createdby = "tobiasko", description = "input files:\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_016_S604605_wt_L_2_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_010_S604604_wt_L_1_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_009_S604609_GFP_L_2_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_015_S604606_mNLS_L_1_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_004_S604613_mNLS_S_2_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_002_S604607_mNLS_L_2_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_014_S604611_wt_S_2_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_017_S604608_GFP_L_1_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_011_S604614_wt_L_high_1_WT_L_high.raw\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_005_S604612_mNLS_S_1_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_008_S604610_wt_S_1_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_003_S604615_wt_L_high_2_WT_L_high.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410677), list(`_classname` = "resource", `_id` = 2410676), list(`_classname` = "resource", `_id` = 2410675), list(`_classname` = "resource", `_id` = 2410674), list(`_classname` = "resource", `_id` = 2410673), list(`_classname` = "resource", `_id` = 2410672), list(`_classname` = "resource", `_id` = 2410671), list(`_classname` = "resource", `_id` = 2410670), list(`_classname` = "resource", `_id` = 2410669), list( `_classname` = "resource", `_id` = 2410668), list(`_classname` = "resource", `_id` = 2410667), list(`_classname` = "resource", `_id` = 2410666)), modified = "2023-12-11 10:23:00", modifiedby = "tobiasko", name = "precursor heatmap plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2411419, container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:23:02", createdby = "tobiasko", filechecksum = "bcc8f2012e0b5349b57287764bf7e41a", junk = "false", modified = "2023-12-11 10:23:02", modifiedby = "tobiasko", name = "WU297592-20231211-1023-rawDiag.pdf", relativepath = "container_33648/workunit_297592/WU297592-20231211-1023-rawDiag.pdf", size = "1340449", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33648/workunit_297592/WU297592-20231211-1023-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33648/workunit_297592/WU297592-20231211-1023-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297592))) The current plot is available as workunit 297592 #rows are 1089801 output$download 1... #rows are 1089801 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b770cd670.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b770cd670.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297593, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:23:15", createdby = "tobiasko", description = "input files:\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_016_S604605_wt_L_2_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_010_S604604_wt_L_1_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_009_S604609_GFP_L_2_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_015_S604606_mNLS_L_1_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_004_S604613_mNLS_S_2_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_002_S604607_mNLS_L_2_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_014_S604611_wt_S_2_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_017_S604608_GFP_L_1_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_011_S604614_wt_L_high_1_WT_L_high.raw\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_005_S604612_mNLS_S_1_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_008_S604610_wt_S_1_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_003_S604615_wt_L_high_2_WT_L_high.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410677), list(`_classname` = "resource", `_id` = 2410676), list(`_classname` = "resource", `_id` = 2410675), list(`_classname` = "resource", `_id` = 2410674), list(`_classname` = "resource", `_id` = 2410673), list(`_classname` = "resource", `_id` = 2410672), list(`_classname` = "resource", `_id` = 2410671), list(`_classname` = "resource", `_id` = 2410670), list(`_classname` = "resource", `_id` = 2410669), list( `_classname` = "resource", `_id` = 2410668), list(`_classname` = "resource", `_id` = 2410667), list(`_classname` = "resource", `_id` = 2410666)), modified = "2023-12-11 10:23:15", modifiedby = "tobiasko", name = "cycle time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2411427, container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:23:16", createdby = "tobiasko", filechecksum = "2dac04b3ec3a74f1579483a09152b136", junk = "false", modified = "2023-12-11 10:23:16", modifiedby = "tobiasko", name = "WU297593-20231211-1023-rawDiag.pdf", relativepath = "container_33648/workunit_297593/WU297593-20231211-1023-rawDiag.pdf", size = "126389", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33648/workunit_297593/WU297593-20231211-1023-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33648/workunit_297593/WU297593-20231211-1023-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297593))) The current plot is available as workunit 297593 #rows are 1089801 output$download 1... Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") #rows are 1089801 output$download 2... ggsave to file /tmp/RtmpNxp9I8/rawDiag-3e235b3824d3f1.pdf generated pdf /tmp/RtmpNxp9I8/rawDiag-3e235b3824d3f1.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297594, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:23:48", createdby = "tobiasko", description = "input files:\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_016_S604605_wt_L_2_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_010_S604604_wt_L_1_WT_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_009_S604609_GFP_L_2_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_015_S604606_mNLS_L_1_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_004_S604613_mNLS_S_2_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_002_S604607_mNLS_L_2_mNLS_L.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_014_S604611_wt_S_2_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_017_S604608_GFP_L_1_GFP.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_011_S604614_wt_L_high_1_WT_L_high.raw\np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_005_S604612_mNLS_S_1_mNLS_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_008_S604610_wt_S_1_WT_S.raw \np33648/Proteomics/EXPLORIS_2/analytic_20231208/20231208_C33648_003_S604615_wt_L_high_2_WT_L_high.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2410677), list(`_classname` = "resource", `_id` = 2410676), list(`_classname` = "resource", `_id` = 2410675), list(`_classname` = "resource", `_id` = 2410674), list(`_classname` = "resource", `_id` = 2410673), list(`_classname` = "resource", `_id` = 2410672), list(`_classname` = "resource", `_id` = 2410671), list(`_classname` = "resource", `_id` = 2410670), list(`_classname` = "resource", `_id` = 2410669), list( `_classname` = "resource", `_id` = 2410668), list(`_classname` = "resource", `_id` = 2410667), list(`_classname` = "resource", `_id` = 2410666)), modified = "2023-12-11 10:23:48", modifiedby = "tobiasko", name = "XIC plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2411429, container = list(`_classname` = "order", `_id` = 33648), created = "2023-12-11 10:23:50", createdby = "tobiasko", filechecksum = "42ea800ee25178115beb6d8a76c955a0", junk = "false", modified = "2023-12-11 10:23:50", modifiedby = "tobiasko", name = "WU297594-20231211-1023-rawDiag.pdf", relativepath = "container_33648/workunit_297594/WU297594-20231211-1023-rawDiag.pdf", size = "45350", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33648/workunit_297594/WU297594-20231211-1023-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33648/workunit_297594/WU297594-20231211-1023-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297594))) The current plot is available as workunit 297594 #rows are 1089801 output$download 1... DEBUG renderPlot plotQCs #rows are 1089801 output$download 1... DEBUG renderPlot plotQCs #rows are 1089801 output$download 1... Execution halted