Listening on http://127.0.0.1:35295 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice #rows are 0 saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_008_S608425_deadVRK1_1_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_004_S608421_ccTFAM_3_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_020_S608422_VRK1_1_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_012_S608426_deadVRK1_2_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_022_S608420_ccTFAM_2_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_015_S608423_VRK1_2_Group_2.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_016_S608419_ccTFAM_1_Group_1.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_007_S608427_deadVRK1_3_Group_3.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_019_S608428_RP3_1_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_018_S608429_RP3_2_Group_4.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_003_S608433_plasmid_3_Group_5.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_002_S608432_plasmid_2_Group_5.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_014_S608424_VRK1_3_Group_2.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_006_S608435_GFP_2_Group_6.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_011_S608436_GFP_3_Group_6.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_010_S608434_GFP_1_Group_6.raw qc ... renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_023_S608430_RP3_3_Group_4.raw qc ... renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_024_S608431_plasmid_1_Group_5.raw qc ... missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode missing column name(s): LMCorrection, ElapsedScanTimesec, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMmZCorrectionppm to LMCorrection renamed AGCPSMode to PrescanMode #rows are 1634019 output$tic.basepeak <- renderPlot({ #rows are 1634019 output$download 2... saving 'login and webservicepassword' ... ggsave to file /tmp/Rtmp7kWYAj/rawDiag-351d271fa6ee69.pdf generated pdf /tmp/Rtmp7kWYAj/rawDiag-351d271fa6ee69.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297779, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:15:28", createdby = "tobiasko", description = "input files:\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_016_S608419_ccTFAM_1_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_007_S608427_deadVRK1_3_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_019_S608428_RP3_1_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_015_S608423_VRK1_2_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_004_S608421_ccTFAM_3_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_018_S608429_RP3_2_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_003_S608433_plasmid_3_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_022_S608420_ccTFAM_2_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_008_S608425_deadVRK1_1_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_002_S608432_plasmid_2_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_020_S608422_VRK1_1_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_012_S608426_deadVRK1_2_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_006_S608435_GFP_2_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_010_S608434_GFP_1_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_023_S608430_RP3_3_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_014_S608424_VRK1_3_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_024_S608431_plasmid_1_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_011_S608436_GFP_3_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2414277), list(`_classname` = "resource", `_id` = 2414276), list(`_classname` = "resource", `_id` = 2414275), list(`_classname` = "resource", `_id` = 2414274), list(`_classname` = "resource", `_id` = 2414273), list(`_classname` = "resource", `_id` = 2414272), list(`_classname` = "resource", `_id` = 2414271), list(`_classname` = "resource", `_id` = 2414270), list(`_classname` = "resource", `_id` = 2414269), list( `_classname` = "resource", `_id` = 2414268), list(`_classname` = "resource", `_id` = 2414267), list(`_classname` = "resource", `_id` = 2414266), list(`_classname` = "resource", `_id` = 2414265), list(`_classname` = "resource", `_id` = 2414264), list(`_classname` = "resource", `_id` = 2414263), list(`_classname` = "resource", `_id` = 2414262), list(`_classname` = "resource", `_id` = 2414261), list(`_classname` = "resource", `_id` = 2414260)), modified = "2023-12-14 15:15:28", modifiedby = "tobiasko", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2414278, container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:15:29", createdby = "tobiasko", filechecksum = "25473f3260bc05e9d6a9152875c6f0ae", junk = "false", modified = "2023-12-14 15:15:29", modifiedby = "tobiasko", name = "WU297779-20231214-1515-rawDiag.pdf", relativepath = "container_33732/workunit_297779/WU297779-20231214-1515-rawDiag.pdf", size = "288988", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33732/workunit_297779/WU297779-20231214-1515-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33732/workunit_297779/WU297779-20231214-1515-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297779))) The current plot is available as workunit 297779 #rows are 1634019 output$download 1... saving 'login and webservicepassword' ... output$scan.frequency <- renderPlot Warning: Removed 29 rows containing missing values (`geom_line()`). #rows are 1634019 output$download 2... ggsave to file /tmp/Rtmp7kWYAj/rawDiag-351d2732b6b53.pdf Warning: Removed 29 rows containing missing values (`geom_line()`). generated pdf /tmp/Rtmp7kWYAj/rawDiag-351d2732b6b53.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297781, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:29:13", createdby = "tobiasko", description = "input files:\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_016_S608419_ccTFAM_1_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_007_S608427_deadVRK1_3_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_019_S608428_RP3_1_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_015_S608423_VRK1_2_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_004_S608421_ccTFAM_3_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_018_S608429_RP3_2_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_003_S608433_plasmid_3_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_022_S608420_ccTFAM_2_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_008_S608425_deadVRK1_1_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_002_S608432_plasmid_2_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_020_S608422_VRK1_1_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_012_S608426_deadVRK1_2_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_006_S608435_GFP_2_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_010_S608434_GFP_1_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_023_S608430_RP3_3_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_014_S608424_VRK1_3_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_024_S608431_plasmid_1_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_011_S608436_GFP_3_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2414277), list(`_classname` = "resource", `_id` = 2414276), list(`_classname` = "resource", `_id` = 2414275), list(`_classname` = "resource", `_id` = 2414274), list(`_classname` = "resource", `_id` = 2414273), list(`_classname` = "resource", `_id` = 2414272), list(`_classname` = "resource", `_id` = 2414271), list(`_classname` = "resource", `_id` = 2414270), list(`_classname` = "resource", `_id` = 2414269), list( `_classname` = "resource", `_id` = 2414268), list(`_classname` = "resource", `_id` = 2414267), list(`_classname` = "resource", `_id` = 2414266), list(`_classname` = "resource", `_id` = 2414265), list(`_classname` = "resource", `_id` = 2414264), list(`_classname` = "resource", `_id` = 2414263), list(`_classname` = "resource", `_id` = 2414262), list(`_classname` = "resource", `_id` = 2414261), list(`_classname` = "resource", `_id` = 2414260)), modified = "2023-12-14 15:29:13", modifiedby = "tobiasko", name = "scan frequency plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2414280, container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:29:15", createdby = "tobiasko", filechecksum = "5423757f1b4619df336c41c547bb7d72", junk = "false", modified = "2023-12-14 15:29:15", modifiedby = "tobiasko", name = "WU297781-20231214-1529-rawDiag.pdf", relativepath = "container_33732/workunit_297781/WU297781-20231214-1529-rawDiag.pdf", size = "460115", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33732/workunit_297781/WU297781-20231214-1529-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33732/workunit_297781/WU297781-20231214-1529-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297781))) The current plot is available as workunit 297781 #rows are 1634019 output$download 1... Warning in max(res$n) : no non-missing arguments to max; returning -Inf Warning: Error in combine_vars: Faceting variables must have at least one value 184: 183: signalCondition 182: signal_abort 181: rlang::abort 180: cli::cli_abort 179: combine_vars 178: compute_layout 177: self$facet$compute_layout 176: setup 175: layout$setup 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cycle.load 1: runApp #rows are 1634019 output$download 2... #rows are 1634019 output$download 2... ggsave to file /tmp/Rtmp7kWYAj/rawDiag-351d2710e5efde.pdf generated pdf /tmp/Rtmp7kWYAj/rawDiag-351d2710e5efde.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297782, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:34:17", createdby = "tobiasko", description = "input files:\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_016_S608419_ccTFAM_1_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_007_S608427_deadVRK1_3_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_019_S608428_RP3_1_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_015_S608423_VRK1_2_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_004_S608421_ccTFAM_3_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_018_S608429_RP3_2_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_003_S608433_plasmid_3_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_022_S608420_ccTFAM_2_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_008_S608425_deadVRK1_1_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_002_S608432_plasmid_2_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_020_S608422_VRK1_1_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_012_S608426_deadVRK1_2_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_006_S608435_GFP_2_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_010_S608434_GFP_1_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_023_S608430_RP3_3_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_014_S608424_VRK1_3_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_024_S608431_plasmid_1_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_011_S608436_GFP_3_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2414277), list(`_classname` = "resource", `_id` = 2414276), list(`_classname` = "resource", `_id` = 2414275), list(`_classname` = "resource", `_id` = 2414274), list(`_classname` = "resource", `_id` = 2414273), list(`_classname` = "resource", `_id` = 2414272), list(`_classname` = "resource", `_id` = 2414271), list(`_classname` = "resource", `_id` = 2414270), list(`_classname` = "resource", `_id` = 2414269), list( `_classname` = "resource", `_id` = 2414268), list(`_classname` = "resource", `_id` = 2414267), list(`_classname` = "resource", `_id` = 2414266), list(`_classname` = "resource", `_id` = 2414265), list(`_classname` = "resource", `_id` = 2414264), list(`_classname` = "resource", `_id` = 2414263), list(`_classname` = "resource", `_id` = 2414262), list(`_classname` = "resource", `_id` = 2414261), list(`_classname` = "resource", `_id` = 2414260)), modified = "2023-12-14 15:34:17", modifiedby = "tobiasko", name = "lock mass correction plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2414281, container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:34:18", createdby = "tobiasko", filechecksum = "da735775a7285f03107ce71ff1ccb84e", junk = "false", modified = "2023-12-14 15:34:18", modifiedby = "tobiasko", name = "WU297782-20231214-1534-rawDiag.pdf", relativepath = "container_33732/workunit_297782/WU297782-20231214-1534-rawDiag.pdf", size = "135086", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33732/workunit_297782/WU297782-20231214-1534-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33732/workunit_297782/WU297782-20231214-1534-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297782))) The current plot is available as workunit 297782 #rows are 1634019 output$download 1... #rows are 1634019 output$download 2... ggsave to file /tmp/Rtmp7kWYAj/rawDiag-351d276fd95915.pdf generated pdf /tmp/Rtmp7kWYAj/rawDiag-351d276fd95915.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297783, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:35:23", createdby = "tobiasko", description = "input files:\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_016_S608419_ccTFAM_1_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_007_S608427_deadVRK1_3_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_019_S608428_RP3_1_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_015_S608423_VRK1_2_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_004_S608421_ccTFAM_3_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_018_S608429_RP3_2_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_003_S608433_plasmid_3_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_022_S608420_ccTFAM_2_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_008_S608425_deadVRK1_1_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_002_S608432_plasmid_2_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_020_S608422_VRK1_1_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_012_S608426_deadVRK1_2_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_006_S608435_GFP_2_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_010_S608434_GFP_1_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_023_S608430_RP3_3_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_014_S608424_VRK1_3_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_024_S608431_plasmid_1_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_011_S608436_GFP_3_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2414277), list(`_classname` = "resource", `_id` = 2414276), list(`_classname` = "resource", `_id` = 2414275), list(`_classname` = "resource", `_id` = 2414274), list(`_classname` = "resource", `_id` = 2414273), list(`_classname` = "resource", `_id` = 2414272), list(`_classname` = "resource", `_id` = 2414271), list(`_classname` = "resource", `_id` = 2414270), list(`_classname` = "resource", `_id` = 2414269), list( `_classname` = "resource", `_id` = 2414268), list(`_classname` = "resource", `_id` = 2414267), list(`_classname` = "resource", `_id` = 2414266), list(`_classname` = "resource", `_id` = 2414265), list(`_classname` = "resource", `_id` = 2414264), list(`_classname` = "resource", `_id` = 2414263), list(`_classname` = "resource", `_id` = 2414262), list(`_classname` = "resource", `_id` = 2414261), list(`_classname` = "resource", `_id` = 2414260)), modified = "2023-12-14 15:35:23", modifiedby = "tobiasko", name = "injection time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2414282, container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:35:25", createdby = "tobiasko", filechecksum = "dc15b7d4453eabbc3c2f2d8e7ed24fa9", junk = "false", modified = "2023-12-14 15:35:25", modifiedby = "tobiasko", name = "WU297783-20231214-1535-rawDiag.pdf", relativepath = "container_33732/workunit_297783/WU297783-20231214-1535-rawDiag.pdf", size = "3089714", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33732/workunit_297783/WU297783-20231214-1535-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33732/workunit_297783/WU297783-20231214-1535-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297783))) The current plot is available as workunit 297783 #rows are 1634019 output$download 1... #rows are 1634019 output$download 2... ggsave to file /tmp/Rtmp7kWYAj/rawDiag-351d271d664cf.pdf generated pdf /tmp/Rtmp7kWYAj/rawDiag-351d271d664cf.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297784, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:35:40", createdby = "tobiasko", description = "input files:\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_016_S608419_ccTFAM_1_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_007_S608427_deadVRK1_3_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_019_S608428_RP3_1_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_015_S608423_VRK1_2_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_004_S608421_ccTFAM_3_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_018_S608429_RP3_2_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_003_S608433_plasmid_3_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_022_S608420_ccTFAM_2_Group_1.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_008_S608425_deadVRK1_1_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_002_S608432_plasmid_2_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_020_S608422_VRK1_1_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_012_S608426_deadVRK1_2_Group_3.raw\np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_006_S608435_GFP_2_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_010_S608434_GFP_1_Group_6.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_023_S608430_RP3_3_Group_4.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_014_S608424_VRK1_3_Group_2.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_024_S608431_plasmid_1_Group_5.raw \np33732/Proteomics/EXPLORIS_2/analytic_20231213/20231213_C33732_011_S608436_GFP_3_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2414277), list(`_classname` = "resource", `_id` = 2414276), list(`_classname` = "resource", `_id` = 2414275), list(`_classname` = "resource", `_id` = 2414274), list(`_classname` = "resource", `_id` = 2414273), list(`_classname` = "resource", `_id` = 2414272), list(`_classname` = "resource", `_id` = 2414271), list(`_classname` = "resource", `_id` = 2414270), list(`_classname` = "resource", `_id` = 2414269), list( `_classname` = "resource", `_id` = 2414268), list(`_classname` = "resource", `_id` = 2414267), list(`_classname` = "resource", `_id` = 2414266), list(`_classname` = "resource", `_id` = 2414265), list(`_classname` = "resource", `_id` = 2414264), list(`_classname` = "resource", `_id` = 2414263), list(`_classname` = "resource", `_id` = 2414262), list(`_classname` = "resource", `_id` = 2414261), list(`_classname` = "resource", `_id` = 2414260)), modified = "2023-12-14 15:35:40", modifiedby = "tobiasko", name = "cycle time plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2414283, container = list(`_classname` = "order", `_id` = 33732), created = "2023-12-14 15:35:41", createdby = "tobiasko", filechecksum = "577acb6e61a7c626b00f6a71de457f91", junk = "false", modified = "2023-12-14 15:35:41", modifiedby = "tobiasko", name = "WU297784-20231214-1535-rawDiag.pdf", relativepath = "container_33732/workunit_297784/WU297784-20231214-1535-rawDiag.pdf", size = "187036", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33732/workunit_297784/WU297784-20231214-1535-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33732/workunit_297784/WU297784-20231214-1535-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297784))) The current plot is available as workunit 297784 #rows are 1634019 output$download 1... #rows are 1634019 output$download 2... DEBUG queryMass Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: 'readXICs' is deprecated. Use 'rawrr::readChromatogram' instead. See help("Deprecated") Warning: `aes_string()` was deprecated in ggplot2 3.0.0. ℹ Please use tidy evaluation idioms with `aes()`. ℹ See also `vignette("ggplot2-in-packages")` for more information. Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ℹ Please use `linewidth` instead. #rows are 1634019 output$download 2... DEBUG renderPlot plotQCs #rows are 1634019 output$download 2... DEBUG renderPlot plotQCs #rows are 1634019 output$download 2... Execution halted