Listening on http://127.0.0.1:45595 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: protViz Loading required package: rawDiag Loading required package: parallel Loading required package: tidyr Loading required package: rmarkdown Loading required package: base64enc Loading required package: ggplot2 Loading required package: lattice #rows are 0 /scratch/cpanse/ saving 'login and webservicepassword' ... output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE #rows are 0 /scratch/cpanse/ output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_007_S607926_WT-8_Wild_Type__WT_.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_003_S607925_WT-6_Wild_Type__WT_.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_009_S607924_WT-5_Wild_Type__WT_.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_002_S607928_KO-3_Knock-out__KO_.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_008_S607927_KO-2_Knock-out__KO_.raw qc ... executing mono /usr/local/lib/R/site-library/rawDiag/exec/fgcz_raw.exe /srv/www/htdocs//p33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_004_S607929_KO-4_Knock-out__KO_.raw qc ... missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values missing column name(s): FTResolution, LMCorrection, transient, AGCMode, PrescanMode NA values replaced in MasterScanNumber renamed LMCorrectionppm to LMCorrection copied AGC to AGCMode calculated PrescanMode values #rows are 481871 output$tic.basepeak <- renderPlot({ #rows are 481871 output$download 2... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. output$tic.basepeak <- renderPlot({ #rows are 481871 output$download 2... ggsave to file /tmp/RtmpM5gg7d/rawDiag-371ee746afef8b.pdf generated pdf /tmp/RtmpM5gg7d/rawDiag-371ee746afef8b.pdf bfabricShiny::uploadResource ... list(list(`_classname` = "workunit", `_id` = 297866, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 33720), created = "2023-12-18 09:00:54", createdby = "spfammatter", description = "input files:\np33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_007_S607926_WT-8_Wild_Type__WT_.raw\np33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_009_S607924_WT-5_Wild_Type__WT_.raw\np33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_003_S607925_WT-6_Wild_Type__WT_.raw\np33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_008_S607927_KO-2_Knock-out__KO_.raw\np33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_002_S607928_KO-3_Knock-out__KO_.raw\np33720/Proteomics/LUMOS_2/analytic_20231214/20231214_C33720_004_S607929_KO-4_Knock-out__KO_.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.25.\nSystem information: Linux, 5.10.0-21-amd64, #1 SMP Debian 5.10.162-1 (2023-01-21), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", modified = "2023-12-18 09:00:54", modifiedby = "spfammatter", name = "TIC and basepeak plot", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2415253, container = list(`_classname` = "order", `_id` = 33720), created = "2023-12-18 09:00:56", createdby = "spfammatter", filechecksum = "29b76b424c4cd63a7d81fe80023e6cca", junk = "false", modified = "2023-12-18 09:00:56", modifiedby = "spfammatter", name = "WU297866-20231218-0900-rawDiag.pdf", relativepath = "container_33720/workunit_297866/WU297866-20231218-0900-rawDiag.pdf", size = "89227", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_33720/workunit_297866/WU297866-20231218-0900-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_33720/workunit_297866/WU297866-20231218-0900-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 297866))) The current plot is available as workunit 297866 #rows are 481871 output$download 1... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Execution halted