Listening on http://127.0.0.1:42659
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p32312/Proteomics/EXPLORIS_2/analytic_20230725_dia/20230725_C32312_008_autoQC4L.raw
vals$rawfile: /srv/www/htdocs//p32312/Proteomics/EXPLORIS_2/analytic_20230725_dia/20230725_C32312_008_autoQC4L.raw
reading index for 20230725_C32312_008_autoQC4L.raw...
plotLockMassCorrection
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_005_S408772_Kuppfer_KF_50_enriched_DDA.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_021_S408766_Kuppfer_Bravo_50_ft_DIA.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_015_S408768_Kuppfer_Bravo_50_enriched_DIA.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_002_S408767_Kuppfer_Bravo_200_enriched_DDA.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_008_S408765_Kuppfer_Bravo_200_ft_DDA.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_011_S408770_Kuppfer_KF_50_ft_DDA.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw,
	/srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_005_S408772_Kuppfer_KF_50_enriched_DDA.raw,
	/srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_021_S408766_Kuppfer_Bravo_50_ft_DIA.raw,
	/srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_015_S408768_Kuppfer_Bravo_50_enriched_DIA.raw,
	/srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_002_S408767_Kuppfer_Bravo_200_enriched_DDA.raw,
	/srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_008_S408765_Kuppfer_Bravo_200_ft_DDA.raw,
	/srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_011_S408770_Kuppfer_KF_50_ft_DDA.raw
reading index for 20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw...
reading index for 20220819_005_S408772_Kuppfer_KF_50_enriched_DDA.raw...
reading index for 20220819_021_S408766_Kuppfer_Bravo_50_ft_DIA.raw...
reading index for 20220819_015_S408768_Kuppfer_Bravo_50_enriched_DIA.raw...
reading index for 20220819_002_S408767_Kuppfer_Bravo_200_enriched_DDA.raw...
reading index for 20220819_008_S408765_Kuppfer_Bravo_200_ft_DDA.raw...
reading index for 20220819_011_S408770_Kuppfer_KF_50_ft_DDA.raw...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading BasePeakIntensity ...
reading TIC ...
reading trailer AGC ...
reading trailer AGC ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer AGC ...
reading trailer AGC ...
reading TIC ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
plotMassDistribution
plotMzDistribution
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
plotPrecursorHeatmap
plotLockMassCorrection
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
ggplot2::ggsave to file /tmp/RtmpFK0igp/rawDiag_20231218-120043_plotLockMassCorrection.pdf
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
saving 'login and webservicepassword' ...
plotMassDistribution


Execution halted