Listening on http://127.0.0.1:32851
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
resourcesSelected: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_005_S427187_Glu3_Group_1.raw
vals$rawfile: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_005_S427187_Glu3_Group_1.raw
reading index for 20231130_005_S427187_Glu3_Group_1.raw...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
resourcesSelected: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_005_S427187_Glu3_Group_1.raw
vals$rawfile: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_005_S427187_Glu3_Group_1.raw
resourcesSelected: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_005_S427187_Glu3_Group_1.raw
vals$rawfile: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_005_S427187_Glu3_Group_1.raw
plotMassDistribution
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
plotCycleTime
plotInjectionTime
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
resourcesSelected: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
vals$rawfile: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
resourcesSelected: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
vals$rawfile: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
resourcesSelected: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
vals$rawfile: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
resourcesSelected: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
vals$rawfile: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
reading index for 20231130_013_autoQC01.raw...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
resourcesSelected: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
vals$rawfile: /srv/www/htdocs//p26109/Proteomics/FUSION_2/tomasfranziska_20231130_ot/20231130_013_autoQC01.raw
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
plotCycleTime
plotInjectionTime
plotLockMassCorrection
plotMassDistribution
plotMzDistribution
plotPrecursorHeatmap
plotScanTime
Warning: Error in dplyr::mutate: ℹ In argument: `transient = dplyr::case_when(...)`.
Caused by error in `dplyr::case_when()`:
! Failed to evaluate the left-hand side of formula 1.
Caused by error:
! object 'FTResolution' not found
  202: <Anonymous>
  201: signalCondition
  200: signal_abort
  199: abort
  198: <Anonymous>
  197: signalCondition
  196: signal_abort
  195: abort
  194: h
  193: .handleSimpleError
  192: eval_tidy
  190: case_formula_evaluate
  189: dplyr::case_when
  188: eval
  187: mask$eval_all_mutate
  186: mutate_col
  184: mutate_cols
  183: mutate.data.frame
  181: .calcTransient
  170: plotScanTime
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotTicBasepeak
plotMzDistribution
plotPrecursorHeatmap
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
plotScanTime
Warning: Error in dplyr::mutate: ℹ In argument: `transient = dplyr::case_when(...)`.
Caused by error in `dplyr::case_when()`:
! Failed to evaluate the left-hand side of formula 1.
Caused by error:
! object 'FTResolution' not found
  202: <Anonymous>
  201: signalCondition
  200: signal_abort
  199: abort
  198: <Anonymous>
  197: signalCondition
  196: signal_abort
  195: abort
  194: h
  193: .handleSimpleError
  192: eval_tidy
  190: case_formula_evaluate
  189: dplyr::case_when
  188: eval
  187: mask$eval_all_mutate
  186: mutate_col
  184: mutate_cols
  183: mutate.data.frame
  181: .calcTransient
  170: plotScanTime
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
Warning: Error in dplyr::mutate: ℹ In argument: `transient = dplyr::case_when(...)`.
Caused by error in `dplyr::case_when()`:
! Failed to evaluate the left-hand side of formula 1.
Caused by error:
! object 'FTResolution' not found
  202: <Anonymous>
  201: signalCondition
  200: signal_abort
  199: abort
  198: <Anonymous>
  197: signalCondition
  196: signal_abort
  195: abort
  194: h
  193: .handleSimpleError
  192: eval_tidy
  190: case_formula_evaluate
  189: dplyr::case_when
  188: eval
  187: mask$eval_all_mutate
  186: mutate_col
  184: mutate_cols
  183: mutate.data.frame
  181: .calcTransient
  170: plotScanTime
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
plotCycleTime
plotLockMassCorrection
plotChargeState
reading index for 20231130_013_autoQC01.raw...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
reading index for 20231130_013_autoQC01.raw...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
reading index for 20231130_013_autoQC01.raw...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
plotLockMassCorrection
plotCycleTime
plotTicBasepeak
plotPrecursorHeatmap
plotScanTime
Warning: Error in dplyr::mutate: ℹ In argument: `transient = dplyr::case_when(...)`.
Caused by error in `dplyr::case_when()`:
! Failed to evaluate the left-hand side of formula 1.
Caused by error:
! object 'FTResolution' not found
  202: <Anonymous>
  201: signalCondition
  200: signal_abort
  199: abort
  198: <Anonymous>
  197: signalCondition
  196: signal_abort
  195: abort
  194: h
  193: .handleSimpleError
  192: eval_tidy
  190: case_formula_evaluate
  189: dplyr::case_when
  188: eval
  187: mask$eval_all_mutate
  186: mutate_col
  184: mutate_cols
  183: mutate.data.frame
  181: .calcTransient
  170: plotScanTime
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
Warning: Error in dplyr::mutate: ℹ In argument: `transient = dplyr::case_when(...)`.
Caused by error in `dplyr::case_when()`:
! Failed to evaluate the left-hand side of formula 1.
Caused by error:
! object 'FTResolution' not found
  202: <Anonymous>
  201: signalCondition
  200: signal_abort
  199: abort
  198: <Anonymous>
  197: signalCondition
  196: signal_abort
  195: abort
  194: h
  193: .handleSimpleError
  192: eval_tidy
  190: case_formula_evaluate
  189: dplyr::case_when
  188: eval
  187: mask$eval_all_mutate
  186: mutate_col
  184: mutate_cols
  183: mutate.data.frame
  181: .calcTransient
  170: plotScanTime
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotChargeState


Execution halted