Listening on http://127.0.0.1:40531
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotPrecursorHeatmap
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_003_S625565_CIP2A_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw, /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_002_S625566_IgG2b_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw
vals$rawfile: /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_003_S625565_CIP2A_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw,
	/srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_002_S625566_IgG2b_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw
reading index for 20240119_C33989_003_S625565_CIP2A_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw...
reading index for 20240119_C33989_002_S625566_IgG2b_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
plotTicBasepeak
plotChargeState
plotTicBasepeak
resourcesSelected: /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_003_S625565_CIP2A_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw, /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_002_S625566_IgG2b_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw
vals$rawfile: /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_003_S625565_CIP2A_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw,
	/srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_002_S625566_IgG2b_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw
ggplot2::ggsave to file /tmp/RtmpyruX9X/rawDiag_20240122-101838_plotTicBasepeak.pdf
Warning: Error in +: non-numeric argument to binary operator
  1: runApp
plotTicBasepeak
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_003_S625565_CIP2A_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw, /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_002_S625566_IgG2b_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw
vals$rawfile: /srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_003_S625565_CIP2A_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw,
	/srv/www/htdocs//p33989/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33989_002_S625566_IgG2b_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw
reading index for 20240119_C33989_003_S625565_CIP2A_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw...
reading index for 20240119_C33989_002_S625566_IgG2b_IP_RPE1_PBM_KO_DsRedTOPBP1CT_Mitosis.raw...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
ggplot2::ggsave to file /tmp/RtmpyruX9X/rawDiag_20240122-102124_plotTicBasepeak.pdf
saving 'login and webservicepassword' ...
The current plot is available as workunit 298771.
Rendering actionButton to link workunit 298771 in B-Fabric.
saving 'login and webservicepassword' ...
plotPrecursorHeatmap
plotMassDistribution
plotLockMassCorrection
ggplot2::ggsave to file /tmp/RtmpyruX9X/rawDiag_20240122-102204_plotLockMassCorrection.pdf
The current plot is available as workunit 298772.
Rendering actionButton to link workunit 298772 in B-Fabric.
plotInjectionTime
ggplot2::ggsave to file /tmp/RtmpyruX9X/rawDiag_20240122-102259_plotInjectionTime.pdf
The current plot is available as workunit 298774.
Rendering actionButton to link workunit 298774 in B-Fabric.
plotTicBasepeak
resourcesSelected: /srv/www/htdocs//p33955/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33955_002_S622906_ExpB_2D_12Y_mIgG_37C_1h.raw, /srv/www/htdocs//p33955/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33955_004_S622908_ExpB_2D_12Y_AK23_37C_1h.raw, /srv/www/htdocs//p33955/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33955_003_S622907_ExpB_2D_12Y_AK23_4C_1h.raw
vals$rawfile: /srv/www/htdocs//p33955/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33955_002_S622906_ExpB_2D_12Y_mIgG_37C_1h.raw,
	/srv/www/htdocs//p33955/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33955_004_S622908_ExpB_2D_12Y_AK23_37C_1h.raw,
	/srv/www/htdocs//p33955/Proteomics/EXPLORIS_2/analytic_20240119/20240119_C33955_003_S622907_ExpB_2D_12Y_AK23_4C_1h.raw
reading index for 20240119_C33955_002_S622906_ExpB_2D_12Y_mIgG_37C_1h.raw...
reading index for 20240119_C33955_004_S622908_ExpB_2D_12Y_AK23_37C_1h.raw...
reading index for 20240119_C33955_003_S622907_ExpB_2D_12Y_AK23_4C_1h.raw...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading TIC ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
ggplot2::ggsave to file /tmp/RtmpyruX9X/rawDiag_20240122-104510_plotTicBasepeak.pdf
The current plot is available as workunit 298778.
Rendering actionButton to link workunit 298778 in B-Fabric.
plotLockMassCorrection
ggplot2::ggsave to file /tmp/RtmpyruX9X/rawDiag_20240122-104614_plotLockMassCorrection.pdf
The current plot is available as workunit 298779.
Rendering actionButton to link workunit 298779 in B-Fabric.
plotInjectionTime
ggplot2::ggsave to file /tmp/RtmpyruX9X/rawDiag_20240122-104649_plotInjectionTime.pdf
The current plot is available as workunit 298780.
Rendering actionButton to link workunit 298780 in B-Fabric.
plotTicBasepeak


Execution halted