Listening on http://127.0.0.1:44467
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p33915/Proteomics/LUMOS_2/analytic_20240119/20240119_C33915_002_Urea_1_pool.raw, /srv/www/htdocs//p33915/Proteomics/LUMOS_2/analytic_20240119/20240119_C33915_006_sdc_pool.raw, /srv/www/htdocs//p33915/Proteomics/LUMOS_2/analytic_20240119/20240119_C33915_004_perCA_pool.raw, /srv/www/htdocs//p33915/Proteomics/LUMOS_2/analytic_20240119/20240119_C33915_008_sp3__pool.raw
vals$rawfile: /srv/www/htdocs//p33915/Proteomics/LUMOS_2/analytic_20240119/20240119_C33915_002_Urea_1_pool.raw,
	/srv/www/htdocs//p33915/Proteomics/LUMOS_2/analytic_20240119/20240119_C33915_006_sdc_pool.raw,
	/srv/www/htdocs//p33915/Proteomics/LUMOS_2/analytic_20240119/20240119_C33915_004_perCA_pool.raw,
	/srv/www/htdocs//p33915/Proteomics/LUMOS_2/analytic_20240119/20240119_C33915_008_sp3__pool.raw
reading index for 20240119_C33915_002_Urea_1_pool.raw...
reading index for 20240119_C33915_006_sdc_pool.raw...
reading index for 20240119_C33915_004_perCA_pool.raw...
reading index for 20240119_C33915_008_sp3__pool.raw...
determining ElapsedScanTimesec ...
reading trailer AGC ...
determining ElapsedScanTimesec ...
reading trailer AGC ...
determining ElapsedScanTimesec ...
reading trailer AGC ...
determining ElapsedScanTimesec ...
reading trailer AGC ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading TIC ...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
reading TIC ...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
reading BasePeakIntensity ...
reading BasePeakIntensity ...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
plotTicBasepeak
ggplot2::ggsave to file /tmp/RtmpiFduj4/rawDiag_20240125-161719_plotTicBasepeak.pdf
saving 'login and webservicepassword' ...
The current plot is available as workunit 299001.
Rendering actionButton to link workunit 299001 in B-Fabric.
saving 'login and webservicepassword' ...


Execution halted