Listening on http://127.0.0.1:39557
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotPrecursorHeatmap
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_002_S628457_IgG_Replicate2_IgG_Control.raw, /srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_006_S628459_NPM1Ab_Replicate1_NPM1Ab.raw, /srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_003_S628458_IgG_Replicate3_IgG_Control.raw, /srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_007_S628461_NPM1Ab_Replicate3_NPM1Ab.raw, /srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_004_S628460_NPM1Ab_Replicate2_NPM1Ab.raw, /srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_005_S628456_IgG_Replicate1_IgG_Control.raw
vals$rawfile: /srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_002_S628457_IgG_Replicate2_IgG_Control.raw,
	/srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_006_S628459_NPM1Ab_Replicate1_NPM1Ab.raw,
	/srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_003_S628458_IgG_Replicate3_IgG_Control.raw,
	/srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_007_S628461_NPM1Ab_Replicate3_NPM1Ab.raw,
	/srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_004_S628460_NPM1Ab_Replicate2_NPM1Ab.raw,
	/srv/www/htdocs//p34034/Proteomics/EXPLORIS_1/analytic_20240129/20240129_C34034_005_S628456_IgG_Replicate1_IgG_Control.raw
reading index for 20240129_C34034_002_S628457_IgG_Replicate2_IgG_Control.raw...
reading index for 20240129_C34034_006_S628459_NPM1Ab_Replicate1_NPM1Ab.raw...
reading index for 20240129_C34034_003_S628458_IgG_Replicate3_IgG_Control.raw...
reading index for 20240129_C34034_007_S628461_NPM1Ab_Replicate3_NPM1Ab.raw...
reading index for 20240129_C34034_004_S628460_NPM1Ab_Replicate2_NPM1Ab.raw...
reading index for 20240129_C34034_005_S628456_IgG_Replicate1_IgG_Control.raw...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
determining ElapsedScanTimesec ...
reading trailer LM m/z-Correction (ppm) ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer AGC PS Mode ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer FT Resolution ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading TIC ...
reading TIC ...
reading TIC ...
reading TIC ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
plotTicBasepeak
ggplot2::ggsave to file /tmp/RtmpLlvUT0/rawDiag_20240130-160136_plotTicBasepeak.pdf
saving 'login and webservicepassword' ...
The current plot is available as workunit 299187.
Rendering actionButton to link workunit 299187 in B-Fabric.
saving 'login and webservicepassword' ...
plotLockMassCorrection
Rendering actionButton to link workunit 299187 in B-Fabric.
The current plot is available as workunit 299188.
Rendering actionButton to link workunit 299188 in B-Fabric.
plotInjectionTime
Rendering actionButton to link workunit 299188 in B-Fabric.
The current plot is available as workunit 299189.
Rendering actionButton to link workunit 299189 in B-Fabric.
plotPrecursorHeatmap
Rendering actionButton to link workunit 299189 in B-Fabric.
The current plot is available as workunit 299190.
Rendering actionButton to link workunit 299190 in B-Fabric.
Rendering actionButton to link workunit 299190 in B-Fabric.


Execution halted