Listening on http://127.0.0.1:44211 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. plotTicBasepeak resourcesSelected: /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_004_S632192_Id_OE_2_Group_1.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_009_S632196_Id_OE_GFP3_Control.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_003_S632199_Control_3_Empty_Vector__EV_.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_005_S632195_Id_OE_GFP2_Control.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_007_S632193_Id_OE_3_Group_1.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_008_S632197_Control_1_Empty_Vector__EV_.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_010_S632191_Id_OE_1_Group_1.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_002_S632194_Id_OE_GFP1_Control.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_006_S632198_Control_2_Empty_Vector__EV_.raw vals$rawfile: /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_004_S632192_Id_OE_2_Group_1.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_009_S632196_Id_OE_GFP3_Control.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_003_S632199_Control_3_Empty_Vector__EV_.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_005_S632195_Id_OE_GFP2_Control.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_007_S632193_Id_OE_3_Group_1.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_008_S632197_Control_1_Empty_Vector__EV_.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_010_S632191_Id_OE_1_Group_1.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_002_S632194_Id_OE_GFP1_Control.raw, /srv/www/htdocs//p34114/Proteomics/EXPLORIS_2/analytic_20240202/20240202_C34114_006_S632198_Control_2_Empty_Vector__EV_.raw reading index for 20240202_C34114_004_S632192_Id_OE_2_Group_1.raw... reading index for 20240202_C34114_009_S632196_Id_OE_GFP3_Control.raw... reading index for 20240202_C34114_003_S632199_Control_3_Empty_Vector__EV_.raw... reading index for 20240202_C34114_005_S632195_Id_OE_GFP2_Control.raw... reading index for 20240202_C34114_007_S632193_Id_OE_3_Group_1.raw... reading index for 20240202_C34114_008_S632197_Control_1_Empty_Vector__EV_.raw... reading index for 20240202_C34114_010_S632191_Id_OE_1_Group_1.raw... reading index for 20240202_C34114_002_S632194_Id_OE_GFP1_Control.raw... reading index for 20240202_C34114_006_S632198_Control_2_Empty_Vector__EV_.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... ggplot2::ggsave to file /tmp/RtmpdL76Ei/rawDiag_20240205-100703_plotTicBasepeak.pdf Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. The current plot is available as workunit 299408. Rendering actionButton to link workunit 299408 in B-Fabric. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. plotLockMassCorrection Rendering actionButton to link workunit 299408 in B-Fabric. ggplot2::ggsave to file /tmp/RtmpdL76Ei/rawDiag_20240205-100734_plotLockMassCorrection.pdf The current plot is available as workunit 299409. Rendering actionButton to link workunit 299409 in B-Fabric. plotInjectionTime Rendering actionButton to link workunit 299409 in B-Fabric. ggplot2::ggsave to file /tmp/RtmpdL76Ei/rawDiag_20240205-100817_plotInjectionTime.pdf The current plot is available as workunit 299410. Rendering actionButton to link workunit 299410 in B-Fabric. plotMzDistribution Rendering actionButton to link workunit 299410 in B-Fabric. plotPrecursorHeatmap plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_004_S626879_ZA12_2.raw, /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_002_S626878_ZP24_4.raw, /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_006_S626880_ZTh6_2.raw, /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_011_S626882_ZPa24_2.raw, /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_008_S626881_ZCh4_2.raw vals$rawfile: /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_004_S626879_ZA12_2.raw, /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_002_S626878_ZP24_4.raw, /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_006_S626880_ZTh6_2.raw, /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_011_S626882_ZPa24_2.raw, /srv/www/htdocs//p34006/Proteomics/FUSION_2/limingqin_20240119/20240119_008_S626881_ZCh4_2.raw reading index for 20240119_004_S626879_ZA12_2.raw... reading index for 20240119_002_S626878_ZP24_4.raw... reading index for 20240119_006_S626880_ZTh6_2.raw... reading index for 20240119_011_S626882_ZPa24_2.raw... reading index for 20240119_008_S626881_ZCh4_2.raw... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. plotMassDistribution reading index for 20240119_004_S626879_ZA12_2.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. reading index for 20240119_002_S626878_ZP24_4.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. reading index for 20240119_006_S626880_ZTh6_2.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. reading index for 20240119_011_S626882_ZPa24_2.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. reading index for 20240119_008_S626881_ZCh4_2.raw... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. reading index for 20240119_004_S626879_ZA12_2.raw... reading index for 20240119_002_S626878_ZP24_4.raw... reading index for 20240119_006_S626880_ZTh6_2.raw... reading index for 20240119_011_S626882_ZPa24_2.raw... reading index for 20240119_008_S626881_ZCh4_2.raw... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning: Groups with fewer than two data points have been dropped. Warning: Groups with fewer than two data points have been dropped. Warning: Groups with fewer than two data points have been dropped. Warning: Groups with fewer than two data points have been dropped. Warning: Groups with fewer than two data points have been dropped. ggplot2::ggsave to file /tmp/RtmpdL76Ei/rawDiag_20240205-143926_plotMassDistribution.pdf saving 'login and webservicepassword' ... The current plot is available as workunit 299436. Rendering actionButton to link workunit 299436 in B-Fabric. saving 'login and webservicepassword' ... Execution halted