Listening on http://127.0.0.1:36197
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotCycleTime
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
plotTicBasepeak
resourcesSelected: /srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_005_S634944_ControlTAG_cell-input_Cell_extracts.raw, /srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_006_S634945_GolgiTAG_cell-input_Cell_extracts.raw, /srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_009_S639104_GolgiTAG_IP-input_Input.raw, /srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_003_S634943_GolgiTAG_IP_Sample.raw, /srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_002_S634942_ControlTAG_IP_Control.raw, /srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_008_S634946_ControlTAG_IP-input_Input.raw
vals$rawfile: /srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_005_S634944_ControlTAG_cell-input_Cell_extracts.raw,
	/srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_006_S634945_GolgiTAG_cell-input_Cell_extracts.raw,
	/srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_009_S639104_GolgiTAG_IP-input_Input.raw,
	/srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_003_S634943_GolgiTAG_IP_Sample.raw,
	/srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_002_S634942_ControlTAG_IP_Control.raw,
	/srv/www/htdocs//p34155/Proteomics/LUMOS_2/othman_20240214/20240214_008_S634946_ControlTAG_IP-input_Input.raw
reading index for 20240214_005_S634944_ControlTAG_cell-input_Cell_extracts.raw...
reading index for 20240214_006_S634945_GolgiTAG_cell-input_Cell_extracts.raw...
reading index for 20240214_009_S639104_GolgiTAG_IP-input_Input.raw...
reading index for 20240214_003_S634943_GolgiTAG_IP_Sample.raw...
reading index for 20240214_002_S634942_ControlTAG_IP_Control.raw...
reading index for 20240214_008_S634946_ControlTAG_IP-input_Input.raw...
determining ElapsedScanTimesec ...
reading trailer AGC ...
determining ElapsedScanTimesec ...
reading trailer AGC ...
determining ElapsedScanTimesec ...
determining ElapsedScanTimesec ...
reading trailer AGC ...
reading trailer AGC ...
determining ElapsedScanTimesec ...
determining ElapsedScanTimesec ...
reading trailer AGC ...
reading trailer AGC ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading trailer Ion Injection Time (ms) ...
reading TIC ...
reading TIC ...
reading TIC ...
reading TIC ...
reading TIC ...
reading TIC ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
reading BasePeakIntensity ...
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution.
Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection.
Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode.
ggplot2::ggsave to file /tmp/Rtmp0IrXLv/rawDiag_20240215-114714_plotTicBasepeak.pdf
saving 'login and webservicepassword' ...
The current plot is available as workunit 299867.
Rendering actionButton to link workunit 299867 in B-Fabric.
saving 'login and webservicepassword' ...
plotLockMassCorrection
Rendering actionButton to link workunit 299867 in B-Fabric.
plotInjectionTime
ggplot2::ggsave to file /tmp/Rtmp0IrXLv/rawDiag_20240215-114836_plotInjectionTime.pdf
The current plot is available as workunit 299868.
Rendering actionButton to link workunit 299868 in B-Fabric.
plotPrecursorHeatmap
Rendering actionButton to link workunit 299868 in B-Fabric.
ggplot2::ggsave to file /tmp/Rtmp0IrXLv/rawDiag_20240215-114909_plotPrecursorHeatmap.pdf
The current plot is available as workunit 299869.
Rendering actionButton to link workunit 299869 in B-Fabric.
plotLockMassCorrection
Rendering actionButton to link workunit 299869 in B-Fabric.
plotTicBasepeak


Execution halted