Listening on http://127.0.0.1:37989 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. resourcesSelected: /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240301/20240301_C34430_004_S644835_no5033_EtubA.raw, /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240301/20240301_C34430_006_S644836_no5033_EtubB.raw, /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240301/20240301_C34430_002_S644834_no5032_EtubAB.raw vals$rawfile: /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240301/20240301_C34430_004_S644835_no5033_EtubA.raw, /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240301/20240301_C34430_006_S644836_no5033_EtubB.raw, /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240301/20240301_C34430_002_S644834_no5032_EtubAB.raw reading index for 20240301_C34430_004_S644835_no5033_EtubA.raw... reading index for 20240301_C34430_006_S644836_no5033_EtubB.raw... reading index for 20240301_C34430_002_S644834_no5032_EtubAB.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240228/20240228_C34430_004_S644835_no5033_EtubA.raw, /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240228/20240228_C34430_006_S644836_no5033_EtubB.raw, /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240228/20240228_C34430_002_S644834_no5032_EtubAB.raw vals$rawfile: /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240228/20240228_C34430_004_S644835_no5033_EtubA.raw, /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240228/20240228_C34430_006_S644836_no5033_EtubB.raw, /srv/www/htdocs//p34430/Proteomics/QEXACTIVE_1/analytic_20240228/20240228_C34430_002_S644834_no5032_EtubAB.raw reading index for 20240228_C34430_004_S644835_no5033_EtubA.raw... reading index for 20240228_C34430_006_S644836_no5033_EtubB.raw... reading index for 20240228_C34430_002_S644834_no5032_EtubAB.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_008_S643112_WT_FA_1_Group_2.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_010_S643110_WT_ctrl_1_Group_1.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_003_S643117_mNLS_FA_2_Group_4.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_005_S643113_WT_FA_2_Group_2.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_002_S643111_WT_ctrl_2_Group_1.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_011_S643116_mNLS_FA_1_Group_4.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_004_S643115_mNLS_ctrl_2_Group_3.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_009_S643114_mNLS_ctrl_1_Group_3.raw vals$rawfile: /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_008_S643112_WT_FA_1_Group_2.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_010_S643110_WT_ctrl_1_Group_1.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_003_S643117_mNLS_FA_2_Group_4.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_005_S643113_WT_FA_2_Group_2.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_002_S643111_WT_ctrl_2_Group_1.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_011_S643116_mNLS_FA_1_Group_4.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_004_S643115_mNLS_ctrl_2_Group_3.raw, /srv/www/htdocs//p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_009_S643114_mNLS_ctrl_1_Group_3.raw reading index for 20240229_C34347_008_S643112_WT_FA_1_Group_2.raw... reading index for 20240229_C34347_010_S643110_WT_ctrl_1_Group_1.raw... reading index for 20240229_C34347_003_S643117_mNLS_FA_2_Group_4.raw... reading index for 20240229_C34347_005_S643113_WT_FA_2_Group_2.raw... reading index for 20240229_C34347_002_S643111_WT_ctrl_2_Group_1.raw... reading index for 20240229_C34347_011_S643116_mNLS_FA_1_Group_4.raw... reading index for 20240229_C34347_004_S643115_mNLS_ctrl_2_Group_3.raw... reading index for 20240229_C34347_009_S643114_mNLS_ctrl_1_Group_3.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... plotTicBasepeak ggplot2::ggsave to file /tmp/Rtmp2QK40X/rawDiag_20240304-102132_plotTicBasepeak.pdf saving 'login and webservicepassword' ... The current plot is available as workunit 300616. Rendering actionButton to link workunit 300616 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection ggplot2::ggsave to file /tmp/Rtmp2QK40X/rawDiag_20240304-102211_plotLockMassCorrection.pdf The current plot is available as workunit 300617. Rendering actionButton to link workunit 300617 in B-Fabric. plotInjectionTime ggplot2::ggsave to file /tmp/Rtmp2QK40X/rawDiag_20240304-102244_plotInjectionTime.pdf The current plot is available as workunit 300618. Rendering actionButton to link workunit 300618 in B-Fabric. Rendering actionButton to link workunit 300618 in B-Fabric. plotTicBasepeak ggplot2::ggsave to file /tmp/Rtmp2QK40X/rawDiag_20240304-102412_plotTicBasepeak.pdf The current plot is available as workunit 300619. Rendering actionButton to link workunit 300619 in B-Fabric. resourcesSelected: /srv/www/htdocs//p34248/Proteomics/EXPLORIS_2/analytic_20240221/20240221_C34248_005_S639581_mEGFP_Group_4.raw, /srv/www/htdocs//p34248/Proteomics/EXPLORIS_2/analytic_20240221/20240221_C34248_003_S639579_IRE1a_1-481_Group_2.raw, /srv/www/htdocs//p34248/Proteomics/EXPLORIS_2/analytic_20240221/20240221_C34248_002_S639578_IRE1a_1-410_Group_1.raw, /srv/www/htdocs//p34248/Proteomics/EXPLORIS_2/analytic_20240221/20240221_C34248_004_S639580_IRE1a_561-977_Group_3.raw vals$rawfile: /srv/www/htdocs//p34248/Proteomics/EXPLORIS_2/analytic_20240221/20240221_C34248_005_S639581_mEGFP_Group_4.raw, /srv/www/htdocs//p34248/Proteomics/EXPLORIS_2/analytic_20240221/20240221_C34248_003_S639579_IRE1a_1-481_Group_2.raw, /srv/www/htdocs//p34248/Proteomics/EXPLORIS_2/analytic_20240221/20240221_C34248_002_S639578_IRE1a_1-410_Group_1.raw, /srv/www/htdocs//p34248/Proteomics/EXPLORIS_2/analytic_20240221/20240221_C34248_004_S639580_IRE1a_561-977_Group_3.raw reading index for 20240221_C34248_005_S639581_mEGFP_Group_4.raw... reading index for 20240221_C34248_003_S639579_IRE1a_1-481_Group_2.raw... reading index for 20240221_C34248_002_S639578_IRE1a_1-410_Group_1.raw... reading index for 20240221_C34248_004_S639580_IRE1a_561-977_Group_3.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... ggplot2::ggsave to file /tmp/Rtmp2QK40X/rawDiag_20240304-103639_plotTicBasepeak.pdf The current plot is available as workunit 300623. Rendering actionButton to link workunit 300623 in B-Fabric. plotLockMassCorrection ggplot2::ggsave to file /tmp/Rtmp2QK40X/rawDiag_20240304-103701_plotLockMassCorrection.pdf The current plot is available as workunit 300624. Rendering actionButton to link workunit 300624 in B-Fabric. plotInjectionTime ggplot2::ggsave to file /tmp/Rtmp2QK40X/rawDiag_20240304-103744_plotInjectionTime.pdf The current plot is available as workunit 300625. Rendering actionButton to link workunit 300625 in B-Fabric. plotTicBasepeak ggplot2::ggsave to file /tmp/Rtmp2QK40X/rawDiag_20240304-103813_plotTicBasepeak.pdf The current plot is available as workunit 300626. Rendering actionButton to link workunit 300626 in B-Fabric. Rendering actionButton to link workunit 300626 in B-Fabric.