Listening on http://127.0.0.1:39849 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. resourcesSelected: /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_014r_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_002r_S649278_SW044-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_003_S649277_SW045-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DDA.raw vals$rawfile: /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_014r_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_002r_S649278_SW044-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_003_S649277_SW045-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DDA.raw reading index for 20240308_C34528_014r_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DDA.raw... reading index for 20240308_C34528_002r_S649278_SW044-A2_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DDA.raw... reading index for 20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DDA.raw... reading index for 20240308_C34528_003_S649277_SW045-A1_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DDA.raw... reading index for 20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DDA.raw... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. reading BasePeakIntensity ... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. plotTicBasepeak resourcesSelected: /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_014r_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_002r_S649278_SW044-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_003_S649277_SW045-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DDA.raw vals$rawfile: /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_014r_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_002r_S649278_SW044-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_003_S649277_SW045-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DDA.raw ggplot2::ggsave to file /tmp/Rtmpv5GxBx/rawDiag_20240311-105035_plotTicBasepeak.pdf Warning: Error in +: non-numeric argument to binary operator 1: runApp plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_014r_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_002r_S649278_SW044-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_003_S649277_SW045-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DDA.raw vals$rawfile: /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_014r_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_002r_S649278_SW044-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_003_S649277_SW045-A1_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DDA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DDA.raw reading index for 20240308_C34528_014r_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DDA.raw... reading index for 20240308_C34528_002r_S649278_SW044-A2_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DDA.raw... reading index for 20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DDA.raw... reading index for 20240308_C34528_003_S649277_SW045-A1_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DDA.raw... reading index for 20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DDA.raw... reading index for 20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DDA.raw... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. plotTicBasepeak ggplot2::ggsave to file /tmp/Rtmpv5GxBx/rawDiag_20240311-105334_plotTicBasepeak.pdf saving 'login and webservicepassword' ... The current plot is available as workunit 300932. Rendering actionButton to link workunit 300932 in B-Fabric. saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_014_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_002_S649278_SW044-A2_KO_CBR_Knock-out__KO_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_003r_S649277_SW045-A1_KO_CBR_Knock-out__KO_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DIA.raw vals$rawfile: /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_014_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_002_S649278_SW044-A2_KO_CBR_Knock-out__KO_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_003r_S649277_SW045-A1_KO_CBR_Knock-out__KO_DIA.raw, /srv/www/htdocs//p34528/Proteomics/LUMOS_2/analytic_20240308/20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DIA.raw reading index for 20240308_C34528_008_S649274_SW022-B1_WT_CBR_Wild_Type__WT_DIA.raw... reading index for 20240308_C34528_012_S649275_SW022-B2_WT_CBR_Wild_Type__WT_DIA.raw... reading index for 20240308_C34528_013_S649276_SW022-B3_WT_CBR_Wild_Type__WT_DIA.raw... reading index for 20240308_C34528_009_S649272_SW045-A2_WT_CBR_Wild_Type__WT_DIA.raw... reading index for 20240308_C34528_014_S649273_SW045-A3_WT_CBR_Wild_Type__WT_DIA.raw... reading index for 20240308_C34528_015_S649280_SW054-A1_KO_CBR_Knock-out__KO_DIA.raw... reading index for 20240308_C34528_002_S649278_SW044-A2_KO_CBR_Knock-out__KO_DIA.raw... reading index for 20240308_C34528_004_S649279_SW022-B4_KO_CBR_Knock-out__KO_DIA.raw... reading index for 20240308_C34528_003r_S649277_SW045-A1_KO_CBR_Knock-out__KO_DIA.raw... reading index for 20240308_C34528_007_S649281_SW054-A2_KO_CBR_Knock-out__KO_DIA.raw... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... determining ElapsedScanTimesec ... determining ElapsedScanTimesec ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... determining ElapsedScanTimesec ... reading trailer AGC ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. Warning in validate_read.raw(rawrrIndex) : Missing column FTResolution. Warning in validate_read.raw(rawrrIndex) : Missing column LMCorrection. Warning in validate_read.raw(rawrrIndex) : Missing column PrescanMode. ggplot2::ggsave to file /tmp/Rtmpv5GxBx/rawDiag_20240311-110258_plotTicBasepeak.pdf Execution halted