Listening on http://127.0.0.1:38345 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_003_S649266_Cells5NC_neagtive_controll_UV.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_002_S649269_Cells8_Pulldown_Cells.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_011_S649270_Lysate9NC_neagtive_controll_UV.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_006_S649264_Lysate3_Pulldown_Lysate.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_012_S649267_Cells6NC_neagtive_controll_UV.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_013_S649271_Lysate10NC_neagtive_controll_UV.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_004_S649263_Lysate2NCClick_Pulldown_Lysate_NCClick.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_009_S649268_Cells7_Pulldown_Cells.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_005_S649265_Lysate4_Pulldown_Lysate.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_010_S649262_Lysate1NCClick_Pulldown_Lysate_NCClick.raw vals$rawfile: /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_003_S649266_Cells5NC_neagtive_controll_UV.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_002_S649269_Cells8_Pulldown_Cells.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_011_S649270_Lysate9NC_neagtive_controll_UV.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_006_S649264_Lysate3_Pulldown_Lysate.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_012_S649267_Cells6NC_neagtive_controll_UV.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_013_S649271_Lysate10NC_neagtive_controll_UV.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_004_S649263_Lysate2NCClick_Pulldown_Lysate_NCClick.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_009_S649268_Cells7_Pulldown_Cells.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_005_S649265_Lysate4_Pulldown_Lysate.raw, /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_010_S649262_Lysate1NCClick_Pulldown_Lysate_NCClick.raw reading index for 20240307_C34526_003_S649266_Cells5NC_neagtive_controll_UV.raw... reading index for 20240307_C34526_002_S649269_Cells8_Pulldown_Cells.raw... reading index for 20240307_C34526_011_S649270_Lysate9NC_neagtive_controll_UV.raw... reading index for 20240307_C34526_006_S649264_Lysate3_Pulldown_Lysate.raw... reading index for 20240307_C34526_012_S649267_Cells6NC_neagtive_controll_UV.raw... reading index for 20240307_C34526_013_S649271_Lysate10NC_neagtive_controll_UV.raw... reading index for 20240307_C34526_004_S649263_Lysate2NCClick_Pulldown_Lysate_NCClick.raw... reading index for 20240307_C34526_009_S649268_Cells7_Pulldown_Cells.raw... reading index for 20240307_C34526_005_S649265_Lysate4_Pulldown_Lysate.raw... reading index for 20240307_C34526_010_S649262_Lysate1NCClick_Pulldown_Lysate_NCClick.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... plotTicBasepeak plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. resourcesSelected: /srv/www/htdocs//p34552/Proteomics/EXPLORIS_2/analytic_20240312/20240312_C34552_003_S650242_SOH-051_1_Group_1.raw, /srv/www/htdocs//p34552/Proteomics/EXPLORIS_2/analytic_20240312/20240312_C34552_005_S650243_SOH-051_2_Group_1.raw, /srv/www/htdocs//p34552/Proteomics/EXPLORIS_2/analytic_20240312/20240312_C34552_002_S650245_SOH-051_4_Group_2.raw, /srv/www/htdocs//p34552/Proteomics/EXPLORIS_2/analytic_20240312/20240312_C34552_004_S650244_SOH-051_3_Group_2.raw vals$rawfile: /srv/www/htdocs//p34552/Proteomics/EXPLORIS_2/analytic_20240312/20240312_C34552_003_S650242_SOH-051_1_Group_1.raw, /srv/www/htdocs//p34552/Proteomics/EXPLORIS_2/analytic_20240312/20240312_C34552_005_S650243_SOH-051_2_Group_1.raw, /srv/www/htdocs//p34552/Proteomics/EXPLORIS_2/analytic_20240312/20240312_C34552_002_S650245_SOH-051_4_Group_2.raw, /srv/www/htdocs//p34552/Proteomics/EXPLORIS_2/analytic_20240312/20240312_C34552_004_S650244_SOH-051_3_Group_2.raw reading index for 20240312_C34552_003_S650242_SOH-051_1_Group_1.raw... reading index for 20240312_C34552_005_S650243_SOH-051_2_Group_1.raw... reading index for 20240312_C34552_002_S650245_SOH-051_4_Group_2.raw... reading index for 20240312_C34552_004_S650244_SOH-051_3_Group_2.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... ggplot2::ggsave to file /tmp/RtmpZxbKdc/rawDiag_20240313-102457_plotTicBasepeak.pdf Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. The current plot is available as workunit 301062. Rendering actionButton to link workunit 301062 in B-Fabric. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. plotLockMassCorrection ggplot2::ggsave to file /tmp/RtmpZxbKdc/rawDiag_20240313-102536_plotLockMassCorrection.pdf The current plot is available as workunit 301064. Rendering actionButton to link workunit 301064 in B-Fabric. plotInjectionTime ggplot2::ggsave to file /tmp/RtmpZxbKdc/rawDiag_20240313-102558_plotInjectionTime.pdf The current plot is available as workunit 301065. Rendering actionButton to link workunit 301065 in B-Fabric. Rendering actionButton to link workunit 301065 in B-Fabric. plotTicBasepeak ggplot2::ggsave to file /tmp/RtmpZxbKdc/rawDiag_20240313-102649_plotTicBasepeak.pdf The current plot is available as workunit 301066. Rendering actionButton to link workunit 301066 in B-Fabric.