Listening on http://127.0.0.1:45787 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20220909_EXPL8_Evo5_ZY_MixedSpecies_500ng_E5H50Y45_30SPD_DIA_3.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20220909_EXPL8_Evo5_ZY_MixedSpecies_500ng_E20H50Y30_30SPD_DIA_2.raw vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20220909_EXPL8_Evo5_ZY_MixedSpecies_500ng_E5H50Y45_30SPD_DIA_3.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20220909_EXPL8_Evo5_ZY_MixedSpecies_500ng_E20H50Y30_30SPD_DIA_2.raw reading index for 20220909_EXPL8_Evo5_ZY_MixedSpecies_500ng_E5H50Y45_30SPD_DIA_3.raw... reading index for 20220909_EXPL8_Evo5_ZY_MixedSpecies_500ng_E20H50Y30_30SPD_DIA_2.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... plotCycleTime plotLockMassCorrection Warning: Computation failed in `stat_smooth()` Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Computation failed in `stat_smooth()` Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) plotMassDistribution plotMzDistribution plotScanTime plotTicBasepeak resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw reading index for 20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... ggplot2::ggsave to file /tmp/RtmpulRWcY/rawDiag_20240319-143050_plotTicBasepeak.pdf saving 'login and webservicepassword' ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length The current plot is available as workunit . Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length The current plot is available as workunit . ggplot2::ggsave to file /tmp/RtmpulRWcY/rawDiag_20240319-143154_plotTicBasepeak.pdf Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length The current plot is available as workunit . plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw reading index for 20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw... reading index for 20230324_OLEP08_800ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw... reading index for 20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw... reading index for 20230324_OLEP08_800ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading TIC ... reading BasePeakIntensity ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... ggplot2::ggsave to file /tmp/RtmpulRWcY/rawDiag_20240319-144423_plotTicBasepeak.pdf saving 'login and webservicepassword' ... The current plot is available as workunit . plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw reading index for 20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw... plotTicBasepeak ggplot2::ggsave to file /tmp/RtmpulRWcY/rawDiag_20240319-145430_plotTicBasepeak.pdf saving 'login and webservicepassword' ... The current plot is available as workunit . plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. resourcesSelected: /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_004_S650263_MFM-X296-2_Treated.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_009r_S650265_MFM-X296-4_Treated.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_002_S650262_MFM-X296-1_Control.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_006_S650264_MFM-X296-3_Treated.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_013_S650267_MFM-X296-6_Treated.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_011r_S650266_MFM-X296-5_Treated.raw vals$rawfile: /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_004_S650263_MFM-X296-2_Treated.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_009r_S650265_MFM-X296-4_Treated.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_002_S650262_MFM-X296-1_Control.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_006_S650264_MFM-X296-3_Treated.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_013_S650267_MFM-X296-6_Treated.raw, /srv/www/htdocs//p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_011r_S650266_MFM-X296-5_Treated.raw reading index for 20240313_C34558_004_S650263_MFM-X296-2_Treated.raw... reading index for 20240313_C34558_009r_S650265_MFM-X296-4_Treated.raw... reading index for 20240313_C34558_002_S650262_MFM-X296-1_Control.raw... reading index for 20240313_C34558_006_S650264_MFM-X296-3_Treated.raw... reading index for 20240313_C34558_013_S650267_MFM-X296-6_Treated.raw... reading index for 20240313_C34558_011r_S650266_MFM-X296-5_Treated.raw... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... determining ElapsedScanTimesec ... reading trailer LM m/z-Correction (ppm) ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer AGC PS Mode ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer FT Resolution ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading trailer Ion Injection Time (ms) ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading TIC ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... reading BasePeakIntensity ... plotTicBasepeak The current plot is available as workunit . The current plot is available as workunit . ggplot2::ggsave to file /tmp/RtmpulRWcY/rawDiag_20240319-145802_plotTicBasepeak.pdf Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. The current plot is available as workunit 301285. Rendering actionButton to link workunit 301285 in B-Fabric. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. plotMzDistribution The current plot is available as workunit 301286. Rendering actionButton to link workunit 301286 in B-Fabric. plotChargeState plotMassDistribution plotScanTime plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found.