Listening on http://127.0.0.1:42043
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
resourcesSelected: /srv/www/htdocs//p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_003_S651669_2_Control.raw, /srv/www/htdocs//p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_006_S651670_3_Diseased.raw, /srv/www/htdocs//p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_007_S651671_4_Diseased.raw, /srv/www/htdocs//p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_002_S651668_1_Control.raw
vals$rawfile: /srv/www/htdocs//p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_003_S651669_2_Control.raw,
	/srv/www/htdocs//p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_006_S651670_3_Diseased.raw,
	/srv/www/htdocs//p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_007_S651671_4_Diseased.raw,
	/srv/www/htdocs//p34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_002_S651668_1_Control.raw
reading index for 20240319_C34610_002_S651668_1_Control.raw...
reading took29.4seconds

reading index for 20240319_C34610_003_S651669_2_Control.raw...
reading took29.505seconds

reading index for 20240319_C34610_006_S651670_3_Diseased.raw...
reading took30.268seconds

reading index for 20240319_C34610_007_S651671_4_Diseased.raw...
reading took30.411seconds

plotTicBasepeak
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
list(list(`_classname` = "workunit", `_id` = 301363, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34610), created = "2024-03-21 07:32:19", createdby = "paolo", description = "input files:\np34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_003_S651669_2_Control.raw \np34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_006_S651670_3_Diseased.raw\np34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_007_S651671_4_Diseased.raw\np34610/Proteomics/LUMOS_1/analytic_20240319/20240319_C34610_002_S651668_1_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2466384), list(`_classname` = "resource", `_id` = 2466383), list(`_classname` = "resource", `_id` = 2466382), list(`_classname` = "resource", `_id` = 2466381)), modified = "2024-03-21 07:32:19", modifiedby = "paolo", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2466522, container = list(`_classname` = "order", `_id` = 34610), created = "2024-03-21 07:32:37", createdby = "paolo", filechecksum = "4b4a8dc3bd8726b034dd29b982da77fd", junk = "false", modified = "2024-03-21 07:32:37", modifiedby = "paolo", name = "WU301363-20240321-0732-rawDiag.pdf", relativepath = "container_34610/workunit_301363/WU301363-20240321-0732-rawDiag.pdf", size = "54630", status = "available", storage = list(`_classname` = "storage", `_id` = 10), 
    uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34610/workunit_301363/WU301363-20240321-0732-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34610/workunit_301363/WU301363-20240321-0732-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301363)))
The current plot is available as workunit 301363.
Rendering actionButton to link workunit 301363 in B-Fabric.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
plotChargeState
Rendering actionButton to link workunit 301363 in B-Fabric.
plotMzDistribution
plotPrecursorHeatmap
plotChargeState


Execution halted