Listening on http://127.0.0.1:35375 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw reading index for 20230324_OLEP08_800ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw... reading took384.379seconds reading index for 20230324_OLEP08_800ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw... reading took384.857seconds saving 'login and webservicepassword' ... 2464842 2464841 list(list(errorreport = "Input Resource 2464842 was created with application ASTRAL_1. This is not an input/preceding application of rawDiag!"))list(list(errorreport = "No value specified for workunitid!")) The current plot is available as workunit . plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... plotTicBasepeak 2464842 2464841 list(list(errorreport = "Input Resource 2464842 was created with application ASTRAL_1. This is not an input/preceding application of rawDiag!"))list(list(errorreport = "No value specified for workunitid!")) The current plot is available as workunit . saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_010_S653159_GolgiTAG_WCL_Group_5.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_003_S653156_ControlTAG_IP_Group_2.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_006_S653157_GolgiTAG_FT_Group_3.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_011_S653160_ControlTAG_WCL_Group_6.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_002_S653155_GolgiTAG_IP_Group_1.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_007_S653158_ControlTAG_FT_Group_4.raw vals$rawfile: /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_010_S653159_GolgiTAG_WCL_Group_5.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_003_S653156_ControlTAG_IP_Group_2.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_006_S653157_GolgiTAG_FT_Group_3.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_011_S653160_ControlTAG_WCL_Group_6.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_002_S653155_GolgiTAG_IP_Group_1.raw, /srv/www/htdocs//p34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_007_S653158_ControlTAG_FT_Group_4.raw reading index for 20240320_C34630_006_S653157_GolgiTAG_FT_Group_3.raw... reading took27.218seconds reading index for 20240320_C34630_011_S653160_ControlTAG_WCL_Group_6.raw... reading took27.336seconds reading index for 20240320_C34630_010_S653159_GolgiTAG_WCL_Group_5.raw... reading took27.424seconds reading index for 20240320_C34630_003_S653156_ControlTAG_IP_Group_2.raw... reading took27.645seconds reading index for 20240320_C34630_002_S653155_GolgiTAG_IP_Group_1.raw... reading took27.756seconds reading index for 20240320_C34630_007_S653158_ControlTAG_FT_Group_4.raw... reading took27.895seconds saving 'login and webservicepassword' ... 2466528 2466527 2466526 2466525 2466524 2466523 list(list(`_classname` = "workunit", `_id` = 301379, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34630), created = "2024-03-21 10:15:10", createdby = "tobiasko", description = "input files:\np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_010_S653159_GolgiTAG_WCL_Group_5.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_003_S653156_ControlTAG_IP_Group_2.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_006_S653157_GolgiTAG_FT_Group_3.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_011_S653160_ControlTAG_WCL_Group_6.raw\np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_002_S653155_GolgiTAG_IP_Group_1.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_007_S653158_ControlTAG_FT_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2466528), list(`_classname` = "resource", `_id` = 2466527), list(`_classname` = "resource", `_id` = 2466526), list(`_classname` = "resource", `_id` = 2466525), list(`_classname` = "resource", `_id` = 2466524), list(`_classname` = "resource", `_id` = 2466523)), modified = "2024-03-21 10:15:10", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2466555, container = list(`_classname` = "order", `_id` = 34630), created = "2024-03-21 10:15:12", createdby = "tobiasko", filechecksum = "3cf2d80993f118b046d0ce21d270e888", junk = "false", modified = "2024-03-21 10:15:12", modifiedby = "tobiasko", name = "WU301379-20240321-1015-rawDiag.pdf", relativepath = "container_34630/workunit_301379/WU301379-20240321-1015-rawDiag.pdf", size = "70974", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34630/workunit_301379/WU301379-20240321-1015-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34630/workunit_301379/WU301379-20240321-1015-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301379))) The current plot is available as workunit 301379. Rendering actionButton to link workunit 301379 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Warning: Error in : Discrete value supplied to continuous scale 188: stop 187: train_continuous 186: self$range$train 185: train 184: scales[[i]][[method]] 183: FUN 182: lapply 181: FUN 180: lapply 179: scale_apply 178: train_scales 177: self$facet$train_scales 176: train_position 175: layout$train_position 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp plotInjectionTime 2466528 2466527 2466526 2466525 2466524 2466523 list(list(`_classname` = "workunit", `_id` = 301380, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34630), created = "2024-03-21 10:16:18", createdby = "tobiasko", description = "input files:\np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_010_S653159_GolgiTAG_WCL_Group_5.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_003_S653156_ControlTAG_IP_Group_2.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_006_S653157_GolgiTAG_FT_Group_3.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_011_S653160_ControlTAG_WCL_Group_6.raw\np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_002_S653155_GolgiTAG_IP_Group_1.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_007_S653158_ControlTAG_FT_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2466528), list(`_classname` = "resource", `_id` = 2466527), list(`_classname` = "resource", `_id` = 2466526), list(`_classname` = "resource", `_id` = 2466525), list(`_classname` = "resource", `_id` = 2466524), list(`_classname` = "resource", `_id` = 2466523)), modified = "2024-03-21 10:16:18", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2466556, container = list(`_classname` = "order", `_id` = 34630), created = "2024-03-21 10:16:19", createdby = "tobiasko", filechecksum = "42f9998e1f333d38f1e5d8ea00acc81b", junk = "false", modified = "2024-03-21 10:16:19", modifiedby = "tobiasko", name = "WU301380-20240321-1016-rawDiag.pdf", relativepath = "container_34630/workunit_301380/WU301380-20240321-1016-rawDiag.pdf", size = "601733", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34630/workunit_301380/WU301380-20240321-1016-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34630/workunit_301380/WU301380-20240321-1016-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301380))) The current plot is available as workunit 301380. Rendering actionButton to link workunit 301380 in B-Fabric. plotMassDistribution plotMzDistribution 2466528 2466527 2466526 2466525 2466524 2466523 list(list(`_classname` = "workunit", `_id` = 301381, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34630), created = "2024-03-21 10:17:45", createdby = "tobiasko", description = "input files:\np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_010_S653159_GolgiTAG_WCL_Group_5.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_003_S653156_ControlTAG_IP_Group_2.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_006_S653157_GolgiTAG_FT_Group_3.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_011_S653160_ControlTAG_WCL_Group_6.raw\np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_002_S653155_GolgiTAG_IP_Group_1.raw \np34630/Proteomics/LUMOS_1/analytic_20240320/20240320_C34630_007_S653158_ControlTAG_FT_Group_4.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2466528), list(`_classname` = "resource", `_id` = 2466527), list(`_classname` = "resource", `_id` = 2466526), list(`_classname` = "resource", `_id` = 2466525), list(`_classname` = "resource", `_id` = 2466524), list(`_classname` = "resource", `_id` = 2466523)), modified = "2024-03-21 10:17:45", modifiedby = "tobiasko", name = "plotMzDistribution", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2466558, container = list(`_classname` = "order", `_id` = 34630), created = "2024-03-21 10:17:47", createdby = "tobiasko", filechecksum = "898ecb435eba8aebcdfb13722d4a8d16", junk = "false", modified = "2024-03-21 10:17:47", modifiedby = "tobiasko", name = "WU301381-20240321-1017-rawDiag.pdf", relativepath = "container_34630/workunit_301381/WU301381-20240321-1017-rawDiag.pdf", size = "1748503", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34630/workunit_301381/WU301381-20240321-1017-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34630/workunit_301381/WU301381-20240321-1017-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301381))) The current plot is available as workunit 301381. Rendering actionButton to link workunit 301381 in B-Fabric. plotChargeState resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw reading index for 20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw... reading took414.218seconds reading index for 20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw... reading took446.329seconds reading index for 20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw... reading took448.431seconds reading index for 20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw... reading took452.215seconds reading index for 20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw... reading took454.459seconds reading index for 20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw... reading took460.417seconds reading index for 20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw... reading took462.832seconds reading index for 20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw... reading took466.485seconds reading index for 20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw... reading took466.872seconds reading index for 20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw... reading took467.808seconds reading index for 20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw... reading took468.018seconds reading index for 20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw... reading took467.966seconds reading index for 20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw... reading took468.343seconds reading index for 20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw... reading took468.83seconds reading index for 20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw... reading took468.67seconds reading index for 20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw... reading took469.764seconds reading index for 20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw... reading took469.68seconds Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length 2464860 2464859 2464856 2464855 2464854 2464853 Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(errorreport = "Input Resource 2464860 was created with application ASTRAL_1. This is not an input/preceding application of rawDiag!"))list(list(errorreport = "No value specified for workunitid!")) The current plot is available as workunit . Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length 2464860 2464859 2464856 2464855 2464854 2464853 Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 301385, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34645), created = "2024-03-21 10:29:29", createdby = "cpanse", description = "input files:\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2464860), list(`_classname` = "resource", `_id` = 2464859), list(`_classname` = "resource", `_id` = 2464856), list(`_classname` = "resource", `_id` = 2464855), list(`_classname` = "resource", `_id` = 2464854), list(`_classname` = "resource", `_id` = 2464853)), modified = "2024-03-21 10:29:29", modifiedby = "cpanse", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2466566, container = list(`_classname` = "order", `_id` = 34645), created = "2024-03-21 10:29:31", createdby = "cpanse", filechecksum = "84eb44280a682535ba612783e489c902", junk = "false", modified = "2024-03-21 10:29:31", modifiedby = "cpanse", name = "WU301385-20240321-1029-rawDiag.pdf", relativepath = "container_34645/workunit_301385/WU301385-20240321-1029-rawDiag.pdf", size = "414781", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34645/workunit_301385/WU301385-20240321-1029-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34645/workunit_301385/WU301385-20240321-1029-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301385))) The current plot is available as workunit 301385. Rendering actionButton to link workunit 301385 in B-Fabric. saving 'login and webservicepassword' ... Rendering actionButton to link workunit 301385 in B-Fabric. Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length 2464860 2464859 2464856 2464855 2464854 2464853 Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 301386, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34645), created = "2024-03-21 10:31:15", createdby = "cpanse", description = "input files:\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2464860), list(`_classname` = "resource", `_id` = 2464859), list(`_classname` = "resource", `_id` = 2464856), list(`_classname` = "resource", `_id` = 2464855), list(`_classname` = "resource", `_id` = 2464854), list(`_classname` = "resource", `_id` = 2464853)), modified = "2024-03-21 10:31:15", modifiedby = "cpanse", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2466567, container = list(`_classname` = "order", `_id` = 34645), created = "2024-03-21 10:31:16", createdby = "cpanse", filechecksum = "35eda5413ddb61a394c1f87f90c42346", junk = "false", modified = "2024-03-21 10:31:16", modifiedby = "cpanse", name = "WU301386-20240321-1031-rawDiag.pdf", relativepath = "container_34645/workunit_301386/WU301386-20240321-1031-rawDiag.pdf", size = "640697", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34645/workunit_301386/WU301386-20240321-1031-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34645/workunit_301386/WU301386-20240321-1031-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301386))) The current plot is available as workunit 301386. Rendering actionButton to link workunit 301386 in B-Fabric. Warning: Error in : One or both dimensions exceed the maximum (50000px). - Use `options(ragg.max_dim = ...)` to change the max Warning: May cause the R session to crash 105: stop 104: get_dims 103: 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp Rendering actionButton to link workunit 301386 in B-Fabric. Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length 2464860 2464859 2464856 2464855 2464854 2464853 Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 301388, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34645), created = "2024-03-21 10:32:12", createdby = "cpanse", description = "input files:\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_02.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_01.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E45H50Y5_180K_2Th3p5ms_03.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_03.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_02.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E10H50Y40_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E40H50Y10_180K_2Th3p5ms_01.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E20H50Y30_180K_2Th3p5ms_03.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E5H50Y45_180K_2Th3p5ms_02.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046444/20230324_OLEP08_200ng_30min_E30H50Y20_180K_2Th3p5ms_03.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2464860), list(`_classname` = "resource", `_id` = 2464859), list(`_classname` = "resource", `_id` = 2464856), list(`_classname` = "resource", `_id` = 2464855), list(`_classname` = "resource", `_id` = 2464854), list(`_classname` = "resource", `_id` = 2464853)), modified = "2024-03-21 10:32:12", modifiedby = "cpanse", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2466569, container = list(`_classname` = "order", `_id` = 34645), created = "2024-03-21 10:32:14", createdby = "cpanse", filechecksum = "5392454ca2fbee8846c3e36714259b47", junk = "false", modified = "2024-03-21 10:32:14", modifiedby = "cpanse", name = "WU301388-20240321-1032-rawDiag.pdf", relativepath = "container_34645/workunit_301388/WU301388-20240321-1032-rawDiag.pdf", size = "702762", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34645/workunit_301388/WU301388-20240321-1032-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34645/workunit_301388/WU301388-20240321-1032-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301388))) The current plot is available as workunit 301388. Rendering actionButton to link workunit 301388 in B-Fabric. Execution halted