Listening on http://127.0.0.1:38865
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotTicBasepeak
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_Cycle_01_20230808143253.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top100_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top100_03.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top50_02_20230808161140.raw
vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_Cycle_01_20230808143253.raw,
	/srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top100_02.raw,
	/srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top100_03.raw,
	/srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top50_02_20230808161140.raw
reading index for 20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top50_02_20230808161140.raw...
reading took84.89seconds

reading index for 20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top100_02.raw...
reading took106.783seconds

reading index for 20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top100_03.raw...
reading took107.472seconds

reading index for 20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_Cycle_01_20230808143253.raw...
reading took107.722seconds

plotTicBasepeak
saving 'login and webservicepassword' ...
2464791 2464788 
list(list(`_classname` = "workunit", `_id` = 301658, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34645), created = "2024-03-26 12:24:44", createdby = "cpanse", description = "input files:\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_Cycle_01_20230808143253.raw\np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top100_03.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top100_02.raw \np34645/Proteomics/ASTRAL_1/cpanse_20240315_PXD046453/20230108_AST_Neo1_DDA_UHG_HeLa_200ng_2th2p5ms_top50_02_20230808161140.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2464791), list(`_classname` = "resource", `_id` = 2464788)), modified = "2024-03-26 12:24:44", modifiedby = "cpanse", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2469209, container = list(`_classname` = "order", `_id` = 34645), created = "2024-03-26 12:24:45", createdby = "cpanse", filechecksum = "b902aba4083778bb1be1644ca7c95acb", junk = "false", modified = "2024-03-26 12:24:45", modifiedby = "cpanse", name = "WU301658-20240326-1224-rawDiag.pdf", relativepath = "container_34645/workunit_301658/WU301658-20240326-1224-rawDiag.pdf", size = "89239", status = "available", storage = list(`_classname` = "storage", `_id` = 10), 
    uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34645/workunit_301658/WU301658-20240326-1224-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34645/workunit_301658/WU301658-20240326-1224-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301658)))
The current plot is available as workunit 301658.
Rendering actionButton to link workunit 301658 in B-Fabric.
saving 'login and webservicepassword' ...


Execution halted