Listening on http://127.0.0.1:38015 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... plotTicBasepeak saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_014_S653150_240314_MAC-GFP_2_Control.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_002_S653142_240314_MAC-CIAO2B_3_Group_2.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_006_S653147_240314_MAC-MMS19_2_Group_4.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_015_S653148_240314_MAC-MMS19_3_Group_4.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_007_S653140_240314_MAC-CIAO2B_1_Group_2.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_008_S653145_240314_MAC-CIAO3_3_Group_3.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_016_S653141_240314_MAC-CIAO2B_2_Group_2.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_012_S653151_240314_MAC-GFP_3_Control.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_009_S653146_240314_MAC-MMS19_1_Group_4.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_018_S653139_240314_MAC-CIAO1_3_Group_1.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_013_S653138_240314_MAC-CIAO1_2_Group_1.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_004_S653144_240314_MAC-CIAO3_2_Group_3.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_017_S653143_240314_MAC-CIAO3_1_Group_3.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_005_S653149_240314_MAC-GFP_1_Control.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_003_S653137_240314_MAC-CIAO1_1_Group_1.raw vals$rawfile: /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_014_S653150_240314_MAC-GFP_2_Control.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_002_S653142_240314_MAC-CIAO2B_3_Group_2.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_006_S653147_240314_MAC-MMS19_2_Group_4.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_015_S653148_240314_MAC-MMS19_3_Group_4.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_007_S653140_240314_MAC-CIAO2B_1_Group_2.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_008_S653145_240314_MAC-CIAO3_3_Group_3.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_016_S653141_240314_MAC-CIAO2B_2_Group_2.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_012_S653151_240314_MAC-GFP_3_Control.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_009_S653146_240314_MAC-MMS19_1_Group_4.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_018_S653139_240314_MAC-CIAO1_3_Group_1.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_013_S653138_240314_MAC-CIAO1_2_Group_1.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_004_S653144_240314_MAC-CIAO3_2_Group_3.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_017_S653143_240314_MAC-CIAO3_1_Group_3.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_005_S653149_240314_MAC-GFP_1_Control.raw, /srv/www/htdocs//p34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_003_S653137_240314_MAC-CIAO1_1_Group_1.raw reading index for 20240327_C34627_007_S653140_240314_MAC-CIAO2B_1_Group_2.raw... reading took89.408seconds reading index for 20240327_C34627_002_S653142_240314_MAC-CIAO2B_3_Group_2.raw... reading took89.921seconds reading index for 20240327_C34627_009_S653146_240314_MAC-MMS19_1_Group_4.raw... reading took90.059seconds reading index for 20240327_C34627_005_S653149_240314_MAC-GFP_1_Control.raw... reading took92.637seconds reading index for 20240327_C34627_013_S653138_240314_MAC-CIAO1_2_Group_1.raw... reading took93.256seconds reading index for 20240327_C34627_018_S653139_240314_MAC-CIAO1_3_Group_1.raw... reading took94.033seconds reading index for 20240327_C34627_006_S653147_240314_MAC-MMS19_2_Group_4.raw... reading took94.969seconds reading index for 20240327_C34627_017_S653143_240314_MAC-CIAO3_1_Group_3.raw... reading took95.132seconds reading index for 20240327_C34627_016_S653141_240314_MAC-CIAO2B_2_Group_2.raw... reading took95.306seconds reading index for 20240327_C34627_014_S653150_240314_MAC-GFP_2_Control.raw... reading took95.368seconds reading index for 20240327_C34627_015_S653148_240314_MAC-MMS19_3_Group_4.raw... reading took95.584seconds reading index for 20240327_C34627_003_S653137_240314_MAC-CIAO1_1_Group_1.raw... reading took95.481seconds reading index for 20240327_C34627_012_S653151_240314_MAC-GFP_3_Control.raw... reading took96.047seconds reading index for 20240327_C34627_004_S653144_240314_MAC-CIAO3_2_Group_3.raw... reading took97.099seconds reading index for 20240327_C34627_008_S653145_240314_MAC-CIAO3_3_Group_3.raw... reading took97.253seconds saving 'login and webservicepassword' ... 2471732 2471731 2471730 2471729 2471728 2471727 2471726 2471725 2471724 2471723 2471722 2471721 2471720 2471719 2471718 list(list(`_classname` = "workunit", `_id` = 301879, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34627), created = "2024-03-28 14:27:42", createdby = "tobiasko", description = "input files:\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_014_S653150_240314_MAC-GFP_2_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_002_S653142_240314_MAC-CIAO2B_3_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_006_S653147_240314_MAC-MMS19_2_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_015_S653148_240314_MAC-MMS19_3_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_007_S653140_240314_MAC-CIAO2B_1_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_008_S653145_240314_MAC-CIAO3_3_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_016_S653141_240314_MAC-CIAO2B_2_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_012_S653151_240314_MAC-GFP_3_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_009_S653146_240314_MAC-MMS19_1_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_018_S653139_240314_MAC-CIAO1_3_Group_1.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_013_S653138_240314_MAC-CIAO1_2_Group_1.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_004_S653144_240314_MAC-CIAO3_2_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_017_S653143_240314_MAC-CIAO3_1_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_005_S653149_240314_MAC-GFP_1_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_003_S653137_240314_MAC-CIAO1_1_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2471732), list(`_classname` = "resource", `_id` = 2471731), list(`_classname` = "resource", `_id` = 2471730), list(`_classname` = "resource", `_id` = 2471729), list(`_classname` = "resource", `_id` = 2471728), list(`_classname` = "resource", `_id` = 2471727), list(`_classname` = "resource", `_id` = 2471726), list(`_classname` = "resource", `_id` = 2471725), list(`_classname` = "resource", `_id` = 2471724), list( `_classname` = "resource", `_id` = 2471723), list(`_classname` = "resource", `_id` = 2471722), list(`_classname` = "resource", `_id` = 2471721), list(`_classname` = "resource", `_id` = 2471720), list(`_classname` = "resource", `_id` = 2471719), list(`_classname` = "resource", `_id` = 2471718)), modified = "2024-03-28 14:27:42", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2471740, container = list(`_classname` = "order", `_id` = 34627), created = "2024-03-28 14:27:43", createdby = "tobiasko", filechecksum = "1f56adf2f204e0645261efa03cf7e71a", junk = "false", modified = "2024-03-28 14:27:43", modifiedby = "tobiasko", name = "WU301879-20240328-1427-rawDiag.pdf", relativepath = "container_34627/workunit_301879/WU301879-20240328-1427-rawDiag.pdf", size = "126146", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34627/workunit_301879/WU301879-20240328-1427-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34627/workunit_301879/WU301879-20240328-1427-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301879))) The current plot is available as workunit 301879. Rendering actionButton to link workunit 301879 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Rendering actionButton to link workunit 301879 in B-Fabric. 2471732 2471731 2471730 2471729 2471728 2471727 2471726 2471725 2471724 2471723 2471722 2471721 2471720 2471719 2471718 list(list(`_classname` = "workunit", `_id` = 301880, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34627), created = "2024-03-28 14:28:20", createdby = "tobiasko", description = "input files:\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_014_S653150_240314_MAC-GFP_2_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_002_S653142_240314_MAC-CIAO2B_3_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_006_S653147_240314_MAC-MMS19_2_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_015_S653148_240314_MAC-MMS19_3_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_007_S653140_240314_MAC-CIAO2B_1_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_008_S653145_240314_MAC-CIAO3_3_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_016_S653141_240314_MAC-CIAO2B_2_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_012_S653151_240314_MAC-GFP_3_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_009_S653146_240314_MAC-MMS19_1_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_018_S653139_240314_MAC-CIAO1_3_Group_1.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_013_S653138_240314_MAC-CIAO1_2_Group_1.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_004_S653144_240314_MAC-CIAO3_2_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_017_S653143_240314_MAC-CIAO3_1_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_005_S653149_240314_MAC-GFP_1_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_003_S653137_240314_MAC-CIAO1_1_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2471732), list(`_classname` = "resource", `_id` = 2471731), list(`_classname` = "resource", `_id` = 2471730), list(`_classname` = "resource", `_id` = 2471729), list(`_classname` = "resource", `_id` = 2471728), list(`_classname` = "resource", `_id` = 2471727), list(`_classname` = "resource", `_id` = 2471726), list(`_classname` = "resource", `_id` = 2471725), list(`_classname` = "resource", `_id` = 2471724), list( `_classname` = "resource", `_id` = 2471723), list(`_classname` = "resource", `_id` = 2471722), list(`_classname` = "resource", `_id` = 2471721), list(`_classname` = "resource", `_id` = 2471720), list(`_classname` = "resource", `_id` = 2471719), list(`_classname` = "resource", `_id` = 2471718)), modified = "2024-03-28 14:28:20", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2471741, container = list(`_classname` = "order", `_id` = 34627), created = "2024-03-28 14:28:22", createdby = "tobiasko", filechecksum = "cf23f7acd5b2e18f8422fa2547f984ec", junk = "false", modified = "2024-03-28 14:28:22", modifiedby = "tobiasko", name = "WU301880-20240328-1428-rawDiag.pdf", relativepath = "container_34627/workunit_301880/WU301880-20240328-1428-rawDiag.pdf", size = "93298", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34627/workunit_301880/WU301880-20240328-1428-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34627/workunit_301880/WU301880-20240328-1428-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301880))) The current plot is available as workunit 301880. Rendering actionButton to link workunit 301880 in B-Fabric. plotPrecursorHeatmap Rendering actionButton to link workunit 301880 in B-Fabric. plotMzDistribution 2471732 2471731 2471730 2471729 2471728 2471727 2471726 2471725 2471724 2471723 2471722 2471721 2471720 2471719 2471718 list(list(`_classname` = "workunit", `_id` = 301881, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34627), created = "2024-03-28 14:30:10", createdby = "tobiasko", description = "input files:\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_014_S653150_240314_MAC-GFP_2_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_002_S653142_240314_MAC-CIAO2B_3_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_006_S653147_240314_MAC-MMS19_2_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_015_S653148_240314_MAC-MMS19_3_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_007_S653140_240314_MAC-CIAO2B_1_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_008_S653145_240314_MAC-CIAO3_3_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_016_S653141_240314_MAC-CIAO2B_2_Group_2.raw\np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_012_S653151_240314_MAC-GFP_3_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_009_S653146_240314_MAC-MMS19_1_Group_4.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_018_S653139_240314_MAC-CIAO1_3_Group_1.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_013_S653138_240314_MAC-CIAO1_2_Group_1.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_004_S653144_240314_MAC-CIAO3_2_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_017_S653143_240314_MAC-CIAO3_1_Group_3.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_005_S653149_240314_MAC-GFP_1_Control.raw \np34627/Proteomics/EXPLORIS_2/analytic_20240327/20240327_C34627_003_S653137_240314_MAC-CIAO1_1_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2471732), list(`_classname` = "resource", `_id` = 2471731), list(`_classname` = "resource", `_id` = 2471730), list(`_classname` = "resource", `_id` = 2471729), list(`_classname` = "resource", `_id` = 2471728), list(`_classname` = "resource", `_id` = 2471727), list(`_classname` = "resource", `_id` = 2471726), list(`_classname` = "resource", `_id` = 2471725), list(`_classname` = "resource", `_id` = 2471724), list( `_classname` = "resource", `_id` = 2471723), list(`_classname` = "resource", `_id` = 2471722), list(`_classname` = "resource", `_id` = 2471721), list(`_classname` = "resource", `_id` = 2471720), list(`_classname` = "resource", `_id` = 2471719), list(`_classname` = "resource", `_id` = 2471718)), modified = "2024-03-28 14:30:10", modifiedby = "tobiasko", name = "plotMzDistribution", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2471742, container = list(`_classname` = "order", `_id` = 34627), created = "2024-03-28 14:30:15", createdby = "tobiasko", filechecksum = "4a1c29760fadc4d07f78cb586c82d47e", junk = "false", modified = "2024-03-28 14:30:15", modifiedby = "tobiasko", name = "WU301881-20240328-1430-rawDiag.pdf", relativepath = "container_34627/workunit_301881/WU301881-20240328-1430-rawDiag.pdf", size = "5306359", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34627/workunit_301881/WU301881-20240328-1430-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34627/workunit_301881/WU301881-20240328-1430-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 301881))) The current plot is available as workunit 301881. Rendering actionButton to link workunit 301881 in B-Fabric. Execution halted